Wall clock time and date at job start Tue Mar 31 2020 05:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38161 * 120.50453 * 2 1 4 4 N 1.31804 * 120.89849 * 179.97438 * 3 2 1 5 5 C 1.31830 * 122.04967 * 359.97438 * 4 3 2 6 6 C 1.38121 * 120.90224 * 0.02562 * 5 4 3 7 7 C 1.39816 * 120.49592 * 179.97438 * 2 1 3 8 8 C 1.48109 * 120.92636 * 0.04449 * 7 2 1 9 9 O 1.21527 * 119.99901 * 353.01375 * 8 7 2 10 10 N 1.34776 * 119.99811 * 173.01292 * 8 7 2 11 11 C 1.39848 * 119.99894 * 185.35171 * 10 8 7 12 12 C 1.39323 * 119.95006 * 323.89787 * 11 10 8 13 13 C 1.38486 * 120.42346 * 179.72086 * 12 11 10 14 14 C 1.37689 * 120.32271 * 0.54907 * 13 12 11 15 15 C 1.40736 * 119.89392 * 359.72520 * 14 13 12 16 16 C 1.41411 * 120.21135 * 180.02562 * 15 14 13 17 17 H 1.07993 * 119.99888 * 148.60671 * 16 15 14 18 18 C 1.39935 * 119.99759 * 328.60353 * 16 15 14 19 19 N 1.30822 * 119.99685 * 166.37734 * 18 16 15 20 20 Si 1.86798 * 119.99974 * 346.38137 * 18 16 15 21 21 H 1.48499 * 109.47198 * 89.21960 * 20 18 16 22 22 H 1.48496 * 109.47320 * 209.21780 * 20 18 16 23 23 H 1.48503 * 109.47295 * 329.22079 * 20 18 16 24 24 C 1.38270 * 119.95065 * 144.16509 * 11 10 8 25 25 H 1.09001 * 109.47282 * 263.65110 * 1 2 3 26 26 H 1.08998 * 109.46714 * 23.64605 * 1 2 3 27 27 H 1.08990 * 109.47362 * 143.64478 * 1 2 3 28 28 H 1.08001 * 119.55250 * 359.97438 * 3 2 1 29 29 H 1.07998 * 119.54651 * 179.97438 * 5 4 3 30 30 H 1.07991 * 120.49798 * 179.97438 * 6 5 4 31 31 H 0.96999 * 120.00416 * 5.35794 * 10 8 7 32 32 H 1.07992 * 119.78458 * 359.97263 * 12 11 10 33 33 H 1.07995 * 119.83200 * 180.25101 * 13 12 11 34 34 H 1.08003 * 120.05175 * 179.74617 * 14 13 12 35 35 H 0.97008 * 119.99972 * 179.97438 * 19 18 16 36 36 H 1.07996 * 120.16137 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1904 0.0000 4 7 3.5263 1.1994 0.0005 5 6 4.2336 0.0869 0.0015 6 6 3.6140 -1.1475 0.0016 7 6 2.2166 -1.2047 0.0005 8 6 1.5081 -2.5054 0.0001 9 8 0.3000 -2.5393 0.1273 10 7 2.2032 -3.6513 -0.1413 11 6 1.5268 -4.8701 -0.2542 12 6 0.3559 -5.0853 0.4695 13 6 -0.3250 -6.2863 0.3607 14 6 0.1545 -7.2858 -0.4559 15 6 1.3392 -7.0850 -1.1886 16 6 1.8375 -8.1067 -2.0298 17 1 2.3816 -7.8503 -2.9267 18 6 1.6254 -9.4500 -1.6999 19 7 1.8422 -10.3841 -2.5898 20 14 1.0327 -9.9093 0.0109 21 1 -0.4521 -9.9091 0.0371 22 1 1.5337 -11.2625 0.3617 23 1 1.5452 -8.9214 0.9942 24 6 2.0241 -5.8618 -1.0795 25 1 -0.3634 -0.1136 1.0214 26 1 -0.3633 0.9414 -0.4122 27 1 -0.3633 -0.8275 -0.6091 28 1 1.6693 2.1262 -0.0004 29 1 5.3122 0.1415 0.0015 30 1 4.1997 -2.0548 0.0020 31 1 3.1727 -3.6308 -0.1648 32 1 -0.0254 -4.3091 1.1162 33 1 -1.2340 -6.4414 0.9229 34 1 -0.3778 -8.2223 -0.5343 35 1 1.6955 -11.3154 -2.3611 36 1 2.9337 -5.6975 -1.6379 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313455573.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:56 Heat of formation + Delta-G solvation = 23.419319 kcal Electronic energy + Delta-G solvation = -20676.374927 eV Core-core repulsion = 17511.199081 eV Total energy + Delta-G solvation = -3165.175847 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.93290 -39.41341 -37.52490 -34.83233 -33.54033 -33.38069 -32.22499 -30.34994 -28.95392 -27.41162 -25.24425 -24.80606 -22.73767 -21.70594 -21.17195 -20.07548 -18.21165 -17.74717 -16.66469 -16.01871 -15.58620 -15.44161 -15.27046 -15.21676 -14.51492 -14.08296 -13.79702 -13.60315 -13.55217 -12.82433 -12.74152 -12.69396 -12.46039 -12.07306 -11.82614 -11.64128 -11.09133 -10.82288 -10.65245 -10.33000 -10.04207 -9.98573 -9.77419 -9.50191 -9.34793 -9.17060 -8.95281 -7.73396 -7.27231 -6.94744 -4.54934 0.53331 0.84019 2.34633 2.57482 2.97915 3.10130 3.19881 3.23366 3.30550 3.66408 3.96006 4.16852 4.43936 4.47216 4.56973 4.61976 4.77811 5.14605 5.33766 5.41487 5.48501 5.60155 5.67079 5.88789 5.96542 6.20079 6.28953 6.33879 6.42562 6.46171 6.65633 6.71095 7.09122 7.23217 7.38953 7.60225 7.65742 7.77361 7.80560 8.02068 8.28863 8.36442 8.57926 8.76761 10.08103 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.034150 B = 0.003757 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.725185 B = 7450.530306 C = 7927.562469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.077 4.077 3 C 0.091 3.909 4 N -0.469 5.469 5 C 0.085 3.915 6 C -0.137 4.137 7 C -0.088 4.088 8 C 0.550 3.450 9 O -0.505 6.505 10 N -0.659 5.659 11 C 0.160 3.840 12 C -0.227 4.227 13 C -0.069 4.069 14 C -0.243 4.243 15 C 0.106 3.894 16 C -0.450 4.450 17 H 0.090 0.910 18 C 0.083 3.917 19 N -0.814 5.814 20 Si 0.916 3.084 21 H -0.269 1.269 22 H -0.293 1.293 23 H -0.247 1.247 24 C -0.227 4.227 25 H 0.079 0.921 26 H 0.062 0.938 27 H 0.097 0.903 28 H 0.161 0.839 29 H 0.161 0.839 30 H 0.140 0.860 31 H 0.402 0.598 32 H 0.113 0.887 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.285 0.715 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.561 15.719 5.792 16.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.079 4.079 3 C -0.066 4.066 4 N -0.178 5.178 5 C -0.071 4.071 6 C -0.158 4.158 7 C -0.100 4.100 8 C 0.337 3.663 9 O -0.380 6.380 10 N -0.303 5.303 11 C 0.069 3.931 12 C -0.248 4.248 13 C -0.088 4.088 14 C -0.262 4.262 15 C 0.102 3.898 16 C -0.479 4.479 17 H 0.108 0.892 18 C -0.135 4.135 19 N -0.439 5.439 20 Si 0.743 3.257 21 H -0.195 1.195 22 H -0.221 1.221 23 H -0.170 1.170 24 C -0.248 4.248 25 H 0.097 0.903 26 H 0.081 0.919 27 H 0.116 0.884 28 H 0.178 0.822 29 H 0.179 0.821 30 H 0.158 0.842 31 H 0.238 0.762 32 H 0.131 0.869 33 H 0.117 0.883 34 H 0.122 0.878 35 H 0.096 0.904 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.187 16.243 5.737 17.365 hybrid contribution -0.037 -1.223 0.545 1.339 sum 2.151 15.020 6.283 16.423 Atomic orbital electron populations 1.20998 0.88928 1.03515 1.03993 1.21142 0.98550 0.92371 0.95877 1.22729 0.89748 0.97355 0.96790 1.67538 1.08335 1.31822 1.10061 1.22695 1.00543 0.87196 0.96679 1.22390 0.93924 1.00331 0.99147 1.20330 0.93804 0.93991 1.01834 1.18156 0.87155 0.83322 0.77657 1.90748 1.13427 1.86558 1.47284 1.43341 1.09969 1.05458 1.71500 1.17515 0.94454 0.83691 0.97475 1.20487 0.98977 0.98631 1.06682 1.20532 0.97802 0.93221 0.97274 1.21218 0.99154 0.99785 1.06039 1.17493 0.89925 0.92162 0.90205 1.19427 1.31232 0.89306 1.07941 0.89175 1.26125 0.91879 0.96220 0.99255 1.69659 1.36963 1.02308 1.34937 0.86296 0.79282 0.77255 0.82829 1.19525 1.22086 1.16997 1.20767 1.02754 0.96260 1.05048 0.90264 0.91893 0.88426 0.82158 0.82140 0.84213 0.76229 0.86923 0.88331 0.87759 0.90446 0.87781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 8.82 36.01 0.32 -1.00 16 2 C -0.08 -0.91 5.93 -104.06 -0.62 -1.52 16 3 C 0.09 0.96 10.83 -17.59 -0.19 0.77 16 4 N -0.47 -5.26 10.34 -13.31 -0.14 -5.40 16 5 C 0.09 0.82 11.17 -17.60 -0.20 0.63 16 6 C -0.14 -1.40 9.61 -39.02 -0.37 -1.78 16 7 C -0.09 -1.14 5.91 -104.65 -0.62 -1.75 16 8 C 0.55 8.82 7.57 -12.21 -0.09 8.73 16 9 O -0.50 -9.42 11.02 5.34 0.06 -9.36 16 10 N -0.66 -10.68 5.29 -10.69 -0.06 -10.74 16 11 C 0.16 3.31 6.27 -83.79 -0.53 2.78 16 12 C -0.23 -4.90 8.70 -39.09 -0.34 -5.24 16 13 C -0.07 -1.53 10.02 -39.69 -0.40 -1.93 16 14 C -0.24 -5.82 7.16 -38.84 -0.28 -6.10 16 15 C 0.11 2.63 5.11 -106.85 -0.55 2.09 16 16 C -0.45 -11.98 9.59 -37.74 -0.36 -12.34 16 17 H 0.09 2.51 8.06 -52.49 -0.42 2.08 16 18 C 0.08 2.16 5.45 -17.35 -0.09 2.07 16 19 N -0.81 -21.55 13.93 55.55 0.77 -20.77 16 20 Si 0.92 20.67 24.46 -169.99 -4.16 16.51 16 21 H -0.27 -5.91 6.48 56.52 0.37 -5.54 16 22 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.25 -5.66 6.93 56.52 0.39 -5.27 16 24 C -0.23 -5.07 9.71 -38.67 -0.38 -5.45 16 25 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.06 0.53 8.06 -51.93 -0.42 0.12 16 27 H 0.10 1.35 5.98 -51.93 -0.31 1.04 16 28 H 0.16 1.22 8.06 -52.49 -0.42 0.80 16 29 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 30 H 0.14 1.08 6.57 -52.49 -0.34 0.73 16 31 H 0.40 5.10 6.99 -40.82 -0.29 4.81 16 32 H 0.11 2.38 6.26 -52.49 -0.33 2.05 16 33 H 0.10 1.91 8.06 -52.49 -0.42 1.48 16 34 H 0.10 2.49 4.43 -52.48 -0.23 2.26 16 35 H 0.29 6.85 8.30 -40.82 -0.34 6.51 16 36 H 0.10 2.15 8.06 -52.49 -0.42 1.72 16 LS Contribution 302.41 15.07 4.56 4.56 Total: -1.00 -30.03 302.41 -7.29 -37.32 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -3.64 Total: 7.93 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: -4.69 Total: -20.05 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.58 Total: -36.92 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.06 Total: -9.36 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.16 Total: 16.51 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.03 -7.29 -37.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313455573.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.743 kcal (2) G-P(sol) polarization free energy of solvation -30.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds