Wall clock time and date at job start Tue Mar 31 2020 05:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46500 * 119.99895 * 2 1 4 4 C 1.50703 * 109.46999 * 270.00003 * 3 2 1 5 5 H 1.08003 * 120.00343 * 0.02562 * 4 3 2 6 6 C 1.37882 * 120.00006 * 179.97438 * 4 3 2 7 7 N 1.31513 * 119.99892 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00024 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47195 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47253 * 119.99836 * 8 6 4 11 11 H 1.48501 * 109.47145 * 240.00246 * 8 6 4 12 12 C 1.34779 * 119.99991 * 180.02562 * 2 1 3 13 13 O 1.21687 * 119.99728 * 182.39497 * 12 2 1 14 14 C 1.46675 * 119.99871 * 2.39799 * 12 2 1 15 15 C 1.35665 * 126.12903 * 174.04456 * 14 12 2 16 16 N 1.30943 * 114.19211 * 179.72415 * 15 14 12 17 17 C 1.29434 * 117.36164 * 0.52339 * 16 15 14 18 18 C 1.50702 * 124.80091 * 179.76232 * 17 16 15 19 19 C 1.52999 * 109.46931 * 59.70155 * 18 17 16 20 20 C 1.52993 * 109.47422 * 299.69402 * 18 17 16 21 21 C 1.53008 * 109.46783 * 179.69558 * 18 17 16 22 22 S 1.70951 * 110.39123 * 359.49538 * 17 16 15 23 23 H 1.08994 * 109.46798 * 235.39056 * 1 2 3 24 24 H 1.08996 * 109.46860 * 355.38792 * 1 2 3 25 25 H 1.08995 * 109.47253 * 115.39147 * 1 2 3 26 26 H 1.08999 * 109.47049 * 29.99866 * 3 2 1 27 27 H 1.08997 * 109.46931 * 150.00401 * 3 2 1 28 28 H 0.97001 * 120.00102 * 180.02562 * 7 6 4 29 29 H 1.08007 * 122.90409 * 0.02562 * 15 14 12 30 30 H 1.08989 * 109.47582 * 59.99456 * 19 18 17 31 31 H 1.09000 * 109.47072 * 299.99049 * 19 18 17 32 32 H 1.09004 * 109.46631 * 179.97438 * 19 18 17 33 33 H 1.09000 * 109.47175 * 179.97438 * 20 18 17 34 34 H 1.08995 * 109.47582 * 300.00488 * 20 18 17 35 35 H 1.09002 * 109.47122 * 60.00046 * 20 18 17 36 36 H 1.08997 * 109.46827 * 300.00105 * 21 18 17 37 37 H 1.09002 * 109.46580 * 60.00078 * 21 18 17 38 38 H 1.09000 * 109.46906 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0974 1.0962 -2.2418 6 6 3.1260 2.8780 -1.6728 7 7 3.5533 3.6182 -0.6732 8 14 3.4367 3.4176 -3.4340 9 1 2.8587 2.4176 -4.3674 10 1 2.7986 4.7381 -3.6670 11 1 4.8991 3.5263 -3.6677 12 6 2.1389 -1.1672 -0.0005 13 8 3.3550 -1.1676 0.0435 14 6 1.4065 -2.4369 -0.0542 15 6 1.9546 -3.6720 -0.1746 16 7 1.0810 -4.6472 -0.1933 17 6 -0.1702 -4.3268 -0.1078 18 6 -1.3124 -5.3098 -0.1183 19 6 -1.1629 -6.2779 1.0570 20 6 -1.2974 -6.0952 -1.4312 21 6 -2.6368 -4.5541 0.0087 22 16 -0.3431 -2.6314 0.0261 23 1 -0.3633 -0.5837 0.8458 24 1 -0.3633 1.0243 0.0826 25 1 -0.3633 -0.4406 -0.9283 26 1 1.6084 2.0284 0.5138 27 1 3.1499 1.1384 0.5138 28 1 4.0295 4.4444 -0.8505 29 1 3.0197 -3.8371 -0.2438 30 1 -1.1737 -5.7184 1.9923 31 1 -0.2195 -6.8163 0.9665 32 1 -1.9894 -6.9886 1.0496 33 1 -2.1233 -6.8065 -1.4385 34 1 -1.4039 -5.4056 -2.2684 35 1 -0.3539 -6.6336 -1.5217 36 1 -2.6474 -3.9946 0.9441 37 1 -2.7432 -3.8644 -0.8286 38 1 -3.4629 -5.2651 0.0016 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330609044.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:09 Heat of formation + Delta-G solvation = -1.462273 kcal Electronic energy + Delta-G solvation = -19907.231431 eV Core-core repulsion = 16876.420589 eV Total energy + Delta-G solvation = -3030.810842 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.94718 -38.81884 -36.69805 -34.96886 -32.71283 -30.13088 -27.93128 -27.63910 -27.48733 -26.44974 -25.29642 -23.22235 -21.13005 -20.27548 -18.01634 -17.83740 -16.60646 -16.11656 -15.76366 -15.20057 -14.89650 -14.50219 -14.47760 -14.19414 -13.72853 -13.55469 -12.95916 -12.69569 -12.61917 -12.41768 -12.21025 -12.10412 -11.92717 -11.77268 -11.31301 -11.27006 -11.24861 -11.17032 -10.90619 -10.66659 -10.21389 -9.73909 -9.40718 -9.22852 -9.19856 -8.75837 -8.48552 -7.76889 -6.09577 -4.14824 0.49808 1.37625 1.81339 2.74972 3.27448 3.35237 3.39132 3.68689 3.83556 3.97114 4.41162 4.53956 4.65080 4.82011 5.05585 5.21077 5.26057 5.30361 5.36763 5.43339 5.50014 5.54624 5.60111 5.64629 5.65420 5.71141 5.83669 5.98669 6.03240 6.05656 6.31026 6.91970 7.32947 7.40790 7.79279 7.86261 8.15024 8.20990 8.77884 8.93708 9.50519 10.98555 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.031849 B = 0.004040 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.937107 B = 6928.772597 C = 7016.265842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.592 5.592 3 C 0.246 3.754 4 C -0.530 4.530 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.893 5.893 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.580 3.420 13 O -0.526 6.526 14 C -0.277 4.277 15 C 0.102 3.898 16 N -0.478 5.478 17 C 0.025 3.975 18 C 0.010 3.990 19 C -0.133 4.133 20 C -0.134 4.134 21 C -0.155 4.155 22 S 0.188 5.812 23 H 0.054 0.946 24 H 0.095 0.905 25 H 0.059 0.941 26 H 0.037 0.963 27 H 0.048 0.952 28 H 0.264 0.736 29 H 0.183 0.817 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.882 -16.176 2.467 22.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.323 5.323 3 C 0.127 3.873 4 C -0.568 4.568 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.365 3.635 13 O -0.404 6.404 14 C -0.401 4.401 15 C -0.054 4.054 16 N -0.192 5.192 17 C -0.250 4.250 18 C 0.006 3.994 19 C -0.192 4.192 20 C -0.193 4.193 21 C -0.213 4.213 22 S 0.447 5.553 23 H 0.072 0.928 24 H 0.114 0.886 25 H 0.077 0.923 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.200 0.800 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.880 -15.842 2.596 21.889 hybrid contribution 1.159 0.291 -1.074 1.607 sum -13.721 -15.551 1.522 20.794 Atomic orbital electron populations 1.21753 0.81847 1.03548 1.00264 1.48051 1.05930 1.07768 1.70587 1.19432 0.92742 0.77253 0.97868 1.21458 1.36819 1.06435 0.92126 0.92314 1.24932 0.95194 0.96298 0.97580 1.69937 1.38245 1.14308 1.30729 0.86420 0.78166 0.78319 0.84404 1.19776 1.20885 1.20772 1.16723 0.86744 0.81743 0.78254 1.90811 1.12469 1.86416 1.50717 1.26193 0.96320 1.00324 1.17287 1.22069 1.00919 0.85354 0.97066 1.66124 1.00370 1.36034 1.16631 1.27828 0.95886 0.99328 1.01935 1.19207 0.89527 0.92748 0.97872 1.21829 1.02709 0.98327 0.96355 1.21831 1.02761 0.99688 0.94984 1.22041 0.95828 1.00662 1.02757 1.84315 1.03984 1.01392 1.65585 0.92779 0.88595 0.92278 0.94517 0.93395 0.92656 0.79965 0.92527 0.91455 0.91793 0.91781 0.92459 0.91465 0.91758 0.91686 0.90786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.15 8.78 59.85 0.53 1.68 16 2 N -0.59 -12.83 2.86 -184.52 -0.53 -13.36 16 3 C 0.25 6.40 5.16 -5.19 -0.03 6.37 16 4 C -0.53 -14.98 9.39 -34.44 -0.32 -15.30 16 5 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 7 N -0.89 -26.30 13.29 55.43 0.74 -25.57 16 8 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 9 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 C 0.58 12.83 7.64 -12.85 -0.10 12.73 16 13 O -0.53 -13.66 16.44 5.20 0.09 -13.57 16 14 C -0.28 -4.90 6.33 -37.10 -0.23 -5.13 16 15 C 0.10 1.71 11.10 -18.85 -0.21 1.50 16 16 N -0.48 -7.22 10.49 -11.50 -0.12 -7.34 16 17 C 0.02 0.31 5.78 -13.29 -0.08 0.24 16 18 C 0.01 0.09 0.99 -155.66 -0.15 -0.06 16 19 C -0.13 -1.14 8.45 37.16 0.31 -0.83 16 20 C -0.13 -1.17 8.45 37.15 0.31 -0.86 16 21 C -0.15 -1.14 7.53 37.16 0.28 -0.86 16 22 S 0.19 2.45 16.18 -107.50 -1.74 0.72 16 23 H 0.05 0.73 6.02 -36.92 -0.22 0.51 16 24 H 0.10 1.46 7.77 -51.93 -0.40 1.05 16 25 H 0.06 0.88 6.88 -51.79 -0.36 0.52 16 26 H 0.04 0.95 7.88 -51.93 -0.41 0.54 16 27 H 0.05 1.40 7.39 -51.93 -0.38 1.02 16 28 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.18 2.95 8.06 -52.48 -0.42 2.53 16 30 H 0.06 0.49 8.14 -51.94 -0.42 0.07 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.46 7.92 -51.93 -0.41 0.05 16 37 H 0.06 0.48 7.92 -51.93 -0.41 0.07 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 328.12 15.07 4.94 4.94 Total: -1.00 -33.00 328.12 -6.95 -39.96 By element: Atomic # 1 Polarization: 1.85 SS G_CDS: -5.52 Total: -3.68 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: 0.21 Total: 1.14 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: 0.09 Total: -46.26 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.09 Total: -13.57 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 2.45 SS G_CDS: -1.74 Total: 0.72 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.00 -6.95 -39.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330609044.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.496 kcal (2) G-P(sol) polarization free energy of solvation -33.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds