Wall clock time and date at job start Tue Mar 31 2020 05:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47160 * 2 1 4 4 C 1.52996 * 109.46948 * 239.99944 * 2 1 3 5 5 C 1.50698 * 109.46933 * 120.00310 * 2 1 3 6 6 N 1.31126 * 122.89487 * 243.13613 * 5 2 1 7 7 C 1.29320 * 117.33626 * 179.97438 * 6 5 2 8 8 S 1.70955 * 110.38165 * 359.97438 * 7 6 5 9 9 C 1.35430 * 122.89925 * 63.13204 * 5 2 1 10 10 C 1.47072 * 126.12115 * 0.03438 * 9 5 2 11 11 O 1.35314 * 119.99875 * 354.48540 * 10 9 5 12 12 N 1.30394 * 119.99883 * 174.47982 * 10 9 5 13 13 C 1.46496 * 119.99806 * 186.99998 * 12 10 9 14 14 C 1.53006 * 109.47141 * 118.27700 * 13 12 10 15 15 C 1.50690 * 109.47172 * 179.97438 * 14 13 12 16 16 H 1.08004 * 120.00233 * 0.02562 * 15 14 13 17 17 C 1.37883 * 120.00018 * 180.02562 * 15 14 13 18 18 N 1.31505 * 119.99551 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99930 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47069 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47048 * 120.00203 * 19 17 15 22 22 H 1.48498 * 109.46961 * 239.99870 * 19 17 15 23 23 H 1.09000 * 109.47038 * 318.43299 * 1 2 3 24 24 H 1.08997 * 109.47199 * 78.43237 * 1 2 3 25 25 H 1.08999 * 109.47717 * 198.43118 * 1 2 3 26 26 H 1.08999 * 109.46863 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.46626 * 300.00038 * 3 2 1 28 28 H 1.09001 * 109.46910 * 59.99938 * 3 2 1 29 29 H 1.09007 * 109.47428 * 280.82667 * 4 2 1 30 30 H 1.08998 * 109.47125 * 40.82568 * 4 2 1 31 31 H 1.08996 * 109.47296 * 160.82485 * 4 2 1 32 32 H 1.08000 * 124.80596 * 180.25880 * 7 6 5 33 33 H 0.96702 * 114.00135 * 184.18786 * 11 10 9 34 34 H 1.09000 * 109.47539 * 238.27760 * 13 12 10 35 35 H 1.09005 * 109.47206 * 358.28145 * 13 12 10 36 36 H 1.09000 * 109.46953 * 300.00418 * 14 13 12 37 37 H 1.08998 * 109.46451 * 59.99863 * 14 13 12 38 38 H 0.97003 * 119.99664 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0323 -0.7105 1.2304 6 7 2.7387 -0.1127 2.1594 7 6 3.1139 -0.8256 3.1710 8 16 2.5545 -2.4327 3.0071 9 6 1.7929 -2.0214 1.4721 10 6 1.0329 -2.9375 0.6084 11 8 0.4038 -2.4642 -0.4921 12 7 0.9654 -4.2059 0.9032 13 6 0.3408 -5.1433 -0.0335 14 6 1.3752 -6.1747 -0.4887 15 6 0.7326 -7.1393 -1.4517 16 1 -0.3093 -7.0277 -1.7133 17 6 1.4748 -8.1645 -1.9989 18 7 2.7433 -8.3007 -1.6799 19 14 0.6784 -9.3598 -3.1932 20 1 -0.7473 -8.9914 -3.3854 21 1 1.3848 -9.3002 -4.4981 22 1 0.7648 -10.7376 -2.6460 23 1 -0.3633 0.7689 0.6819 24 1 -0.3633 0.2061 -1.0068 25 1 -0.3634 -0.9749 0.3249 26 1 3.1300 1.4425 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.9791 -1.7989 -1.0969 30 1 1.4279 -0.4403 -2.1063 31 1 3.0761 -0.4385 -1.4345 32 1 3.6942 -0.4567 4.0038 33 1 -0.1213 -3.1273 -0.9607 34 1 -0.4872 -5.6525 0.4598 35 1 -0.0328 -4.5969 -0.8995 36 1 2.2032 -5.6656 -0.9820 37 1 1.7488 -6.7211 0.3773 38 1 3.2653 -9.0221 -2.0646 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330847716.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:26 Heat of formation + Delta-G solvation = 22.511173 kcal Electronic energy + Delta-G solvation = -20158.045989 eV Core-core repulsion = 17128.274713 eV Total energy + Delta-G solvation = -3029.771275 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.59117 -38.83773 -35.96907 -34.31893 -32.82367 -31.11628 -29.05861 -27.27541 -27.10688 -25.93406 -24.54278 -22.22211 -21.40616 -20.28145 -18.71663 -17.67795 -17.08205 -16.34326 -16.15859 -15.21845 -14.74097 -14.57721 -14.48497 -14.35300 -13.64949 -13.29639 -13.08259 -12.89658 -12.36452 -12.20726 -11.88115 -11.80250 -11.53847 -11.22491 -11.03828 -10.86524 -10.85103 -10.71043 -10.52590 -10.30211 -9.99136 -9.71914 -9.61563 -9.38009 -9.06012 -8.91875 -8.44250 -8.15565 -6.08454 -4.13060 0.37474 1.23906 1.77766 2.43831 3.12526 3.25979 3.33633 3.36881 3.68069 4.13307 4.35767 4.54272 4.84959 4.98525 5.13466 5.27571 5.37376 5.40673 5.70922 5.77550 5.83072 5.91286 5.94988 6.01451 6.11634 6.17096 6.27174 6.31251 6.40376 6.51157 6.58282 6.72690 6.93773 7.57468 7.67063 7.68726 7.89862 8.25708 8.44340 8.93628 9.51658 11.02683 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.023749 B = 0.004206 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.712001 B = 6654.912580 C = 7304.781497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.013 3.987 3 C -0.127 4.127 4 C -0.145 4.145 5 C 0.114 3.886 6 N -0.467 5.467 7 C -0.007 4.007 8 S 0.227 5.773 9 C -0.183 4.183 10 C 0.384 3.616 11 O -0.499 6.499 12 N -0.553 5.553 13 C 0.050 3.950 14 C 0.036 3.964 15 C -0.527 4.527 16 H 0.057 0.943 17 C 0.060 3.940 18 N -0.890 5.890 19 Si 0.895 3.105 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.283 1.283 23 H 0.044 0.956 24 H 0.059 0.941 25 H 0.079 0.921 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.084 0.916 30 H 0.060 0.940 31 H 0.045 0.955 32 H 0.201 0.799 33 H 0.393 0.607 34 H 0.079 0.921 35 H 0.026 0.974 36 H 0.015 0.985 37 H 0.028 0.972 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.811 17.394 7.044 18.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.010 3.990 3 C -0.184 4.184 4 C -0.202 4.202 5 C -0.025 4.025 6 N -0.180 5.180 7 C -0.302 4.302 8 S 0.483 5.517 9 C -0.305 4.305 10 C 0.158 3.842 11 O -0.301 6.301 12 N -0.290 5.290 13 C -0.078 4.078 14 C -0.001 4.001 15 C -0.566 4.566 16 H 0.075 0.925 17 C -0.142 4.142 18 N -0.529 5.529 19 Si 0.722 3.278 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.209 1.209 23 H 0.063 0.937 24 H 0.078 0.922 25 H 0.098 0.902 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.103 0.897 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.253 0.747 34 H 0.097 0.903 35 H 0.044 0.956 36 H 0.034 0.966 37 H 0.047 0.953 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.978 16.859 8.349 18.838 hybrid contribution -1.169 -0.524 -2.274 2.610 sum -2.146 16.335 6.074 17.559 Atomic orbital electron populations 1.22107 0.92943 1.02875 1.01680 1.19096 0.95897 0.94470 0.89562 1.21742 1.01185 0.94347 1.01174 1.22215 0.99715 1.02824 0.95439 1.20645 0.96225 0.89145 0.96523 1.66046 1.12749 1.37502 1.01690 1.28639 1.04814 0.95270 1.01492 1.84255 1.43841 1.10424 1.13206 1.23138 1.10248 0.96084 1.01055 1.20489 0.91199 0.88553 0.83982 1.85256 1.62568 1.43032 1.39221 1.72833 1.23286 1.00701 1.32149 1.22421 0.99734 0.93939 0.91738 1.19032 0.92867 0.91838 0.96381 1.21167 0.96832 1.12266 1.26348 0.92514 1.25003 0.94815 0.97659 0.96709 1.69984 1.07072 1.32021 1.43778 0.86497 0.79472 0.80981 0.80817 1.19695 1.20934 1.20865 0.93681 0.92174 0.90201 0.92531 0.92875 0.92447 0.89734 0.92142 0.93590 0.78267 0.74719 0.90313 0.95571 0.96636 0.95347 0.92865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 7.87 37.16 0.29 -1.36 16 2 C 0.01 0.16 0.75 -155.66 -0.12 0.04 16 3 C -0.13 -1.45 7.64 37.16 0.28 -1.16 16 4 C -0.14 -1.92 7.83 37.16 0.29 -1.63 16 5 C 0.11 1.63 5.45 -83.90 -0.46 1.17 16 6 N -0.47 -6.24 9.53 -11.57 -0.11 -6.35 16 7 C -0.01 -0.07 12.22 51.70 0.63 0.56 16 8 S 0.23 2.89 23.03 -107.50 -2.48 0.41 16 9 C -0.18 -2.79 6.05 -37.00 -0.22 -3.01 16 10 C 0.38 6.35 6.64 -14.58 -0.10 6.26 16 11 O -0.50 -7.11 6.24 -17.63 -0.11 -7.22 16 12 N -0.55 -10.62 10.36 -59.42 -0.62 -11.24 16 13 C 0.05 1.02 6.21 -4.04 -0.03 0.99 16 14 C 0.04 0.94 5.30 -27.88 -0.15 0.80 16 15 C -0.53 -14.60 9.11 -34.44 -0.31 -14.91 16 16 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 19 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 23 H 0.04 0.50 8.00 -51.93 -0.42 0.09 16 24 H 0.06 0.64 7.73 -51.93 -0.40 0.24 16 25 H 0.08 1.04 4.82 -51.93 -0.25 0.79 16 26 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 29 H 0.08 1.30 4.35 -51.87 -0.23 1.07 16 30 H 0.06 0.72 7.72 -51.93 -0.40 0.32 16 31 H 0.05 0.60 7.99 -51.93 -0.41 0.18 16 32 H 0.20 1.36 8.06 -52.49 -0.42 0.94 16 33 H 0.39 5.09 5.93 45.62 0.27 5.36 16 34 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 35 H 0.03 0.48 5.34 -51.93 -0.28 0.20 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 318.60 15.07 4.80 4.80 Total: -1.00 -31.49 318.60 -7.39 -38.88 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -4.61 Total: 1.02 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: 0.02 Total: -10.65 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: 0.01 Total: -43.48 kcal Atomic # 8 Polarization: -7.11 SS G_CDS: -0.11 Total: -7.22 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 2.89 SS G_CDS: -2.48 Total: 0.41 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.49 -7.39 -38.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330847716.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.388 kcal (2) G-P(sol) polarization free energy of solvation -31.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds