Wall clock time and date at job start Tue Mar 31 2020 05:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50706 * 109.46873 * 2 1 4 4 N 1.29313 * 124.80793 * 89.96099 * 3 2 1 5 5 C 1.31122 * 117.33323 * 179.78066 * 4 3 2 6 6 C 1.50704 * 122.89705 * 180.28897 * 5 4 3 7 7 C 1.35431 * 114.20548 * 0.45789 * 5 4 3 8 8 C 1.47080 * 126.11930 * 179.85174 * 7 5 4 9 9 O 1.35318 * 119.99541 * 174.37098 * 8 7 5 10 10 N 1.30390 * 119.99870 * 354.37025 * 8 7 5 11 11 C 1.46492 * 119.99904 * 180.02562 * 10 8 7 12 12 H 1.09006 * 109.47286 * 0.02562 * 11 10 8 13 13 C 1.50696 * 109.47410 * 239.99865 * 11 10 8 14 14 H 1.08003 * 119.99617 * 0.02562 * 13 11 10 15 15 C 1.37880 * 120.00403 * 179.97438 * 13 11 10 16 16 N 1.31514 * 119.99823 * 0.02562 * 15 13 11 17 17 Si 1.86797 * 120.00111 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.46926 * 90.00242 * 17 15 13 19 19 H 1.48500 * 109.46967 * 210.00192 * 17 15 13 20 20 H 1.48500 * 109.47353 * 329.99958 * 17 15 13 21 21 C 1.53004 * 109.47115 * 119.99900 * 11 10 8 22 22 C 1.53004 * 109.47342 * 295.00150 * 21 11 10 23 23 S 1.70954 * 124.80732 * 270.00278 * 3 2 1 24 24 H 1.08999 * 109.47027 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47063 * 299.99852 * 1 2 3 26 26 H 1.08998 * 109.47409 * 60.00029 * 1 2 3 27 27 H 1.09002 * 109.47063 * 240.00148 * 2 1 3 28 28 H 1.08998 * 109.47409 * 119.99971 * 2 1 3 29 29 H 1.08998 * 109.47105 * 263.62263 * 6 5 4 30 30 H 1.09005 * 109.46529 * 23.62044 * 6 5 4 31 31 H 1.08993 * 109.46829 * 143.61786 * 6 5 4 32 32 H 0.96691 * 114.00600 * 2.11192 * 9 8 7 33 33 H 0.96997 * 120.00056 * 179.97438 * 16 15 13 34 34 H 1.09000 * 109.47120 * 175.00000 * 21 11 10 35 35 H 1.08995 * 109.47156 * 54.99768 * 21 11 10 36 36 H 1.09005 * 109.46729 * 299.99956 * 22 21 11 37 37 H 1.08991 * 109.47196 * 179.97438 * 22 21 11 38 38 H 1.09001 * 109.46513 * 59.99433 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2777 2.1171 1.0618 5 6 2.7153 3.3413 0.8912 6 6 3.0465 4.2596 2.0393 7 6 2.8406 3.7105 -0.4058 8 6 3.3033 5.0185 -0.8940 9 8 3.4902 5.2184 -2.2192 10 7 3.5332 5.9854 -0.0499 11 6 3.9935 7.2883 -0.5362 12 1 4.0843 7.2594 -1.6221 13 6 5.3348 7.6064 0.0723 14 1 5.7984 6.9076 0.7530 15 6 5.9709 8.7891 -0.2406 16 7 5.4067 9.6397 -1.0698 17 14 7.6333 9.1837 0.5144 18 1 8.7118 8.6603 -0.3622 19 1 7.7777 10.6552 0.6520 20 1 7.7321 8.5493 1.8534 21 6 2.9840 8.3669 -0.1380 22 6 1.6566 8.1130 -0.8553 23 16 2.3575 2.3410 -1.4037 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.1938 4.9069 2.2444 30 1 3.2735 3.6663 2.9251 31 1 3.9114 4.8694 1.7789 32 1 3.2635 4.4553 -2.7680 33 1 5.8540 10.4718 -1.2897 34 1 3.3685 9.3467 -0.4213 35 1 2.8260 8.3365 0.9400 36 1 1.8146 8.1435 -1.9334 37 1 0.9374 8.8812 -0.5712 38 1 1.2722 7.1332 -0.5719 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330876945.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:54 Heat of formation + Delta-G solvation = 2.971232 kcal Electronic energy + Delta-G solvation = -19985.539148 eV Core-core repulsion = 16954.920557 eV Total energy + Delta-G solvation = -3030.618591 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.95883 -38.19292 -35.13930 -34.47724 -32.39071 -31.33433 -30.10171 -28.19875 -26.58627 -25.43381 -23.19443 -21.95065 -21.51012 -19.54204 -19.49248 -17.61509 -16.92640 -16.16650 -15.49350 -15.13177 -14.66739 -14.25156 -14.13616 -13.76007 -13.46138 -12.93913 -12.87784 -12.75748 -12.30136 -12.29637 -11.96737 -11.80947 -11.75560 -11.38952 -11.22743 -11.16315 -10.87828 -10.82771 -10.28270 -9.95332 -9.74446 -9.70717 -9.65537 -9.35102 -8.85621 -8.62695 -8.08859 -7.75793 -6.01272 -4.06972 0.47377 1.18297 1.61565 2.67065 3.31066 3.36788 3.40196 3.51045 3.94166 4.27745 4.43928 4.72232 4.83922 4.94144 4.96687 5.28409 5.36240 5.43717 5.52881 5.67295 5.89590 6.01423 6.13684 6.21736 6.25538 6.29535 6.36541 6.53659 6.86453 6.96560 7.18760 7.34350 7.64595 7.75529 7.82798 8.01063 8.07726 8.38063 8.77656 9.03569 9.57137 11.04450 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.026726 B = 0.004390 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.416999 B = 6377.283877 C = 6645.692055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.045 4.045 3 C 0.053 3.947 4 N -0.467 5.467 5 C 0.121 3.879 6 C -0.076 4.076 7 C -0.211 4.211 8 C 0.348 3.652 9 O -0.498 6.498 10 N -0.461 5.461 11 C 0.202 3.798 12 H 0.028 0.972 13 C -0.501 4.501 14 H 0.060 0.940 15 C 0.061 3.939 16 N -0.890 5.890 17 Si 0.900 3.100 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.106 4.106 22 C -0.145 4.145 23 S 0.116 5.884 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.107 0.893 32 H 0.375 0.625 33 H 0.261 0.739 34 H 0.100 0.900 35 H 0.040 0.960 36 H 0.041 0.959 37 H 0.034 0.966 38 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.940 -16.975 -0.831 19.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.086 4.086 3 C -0.225 4.225 4 N -0.182 5.182 5 C -0.015 4.015 6 C -0.135 4.135 7 C -0.333 4.333 8 C 0.120 3.880 9 O -0.292 6.292 10 N -0.195 5.195 11 C 0.094 3.906 12 H 0.046 0.954 13 C -0.540 4.540 14 H 0.078 0.922 15 C -0.141 4.141 16 N -0.529 5.529 17 Si 0.727 3.273 18 H -0.207 1.207 19 H -0.211 1.211 20 H -0.198 1.198 21 C -0.145 4.145 22 C -0.202 4.202 23 S 0.372 5.628 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.103 0.897 28 H 0.113 0.887 29 H 0.097 0.903 30 H 0.080 0.920 31 H 0.125 0.875 32 H 0.225 0.775 33 H 0.071 0.929 34 H 0.118 0.882 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -8.845 -16.364 -0.573 18.610 hybrid contribution 1.014 0.382 -0.146 1.093 sum -7.831 -15.982 -0.719 17.812 Atomic orbital electron populations 1.21779 0.93487 1.02452 1.02858 1.20224 0.96720 0.87429 1.04260 1.27059 1.03308 1.01607 0.90506 1.66023 1.14851 1.06145 1.31144 1.20596 0.96490 0.90293 0.94122 1.20576 1.04375 0.96229 0.92362 1.24320 1.14550 0.97893 0.96551 1.20622 0.96549 0.90752 0.80082 1.85216 1.84706 1.42316 1.16918 1.72876 1.12593 1.03475 1.30557 1.19347 0.93505 0.81878 0.95823 0.95369 1.21024 1.01686 1.03885 1.27367 0.92167 1.24919 0.97971 0.96034 0.95170 1.69885 1.38263 1.10125 1.34653 0.86470 0.83770 0.77388 0.79647 1.20747 1.21128 1.19776 1.21565 0.92205 1.02699 0.97985 1.21813 0.98949 0.99203 1.00275 1.83539 1.61434 1.05381 1.12494 0.91431 0.91839 0.92333 0.89651 0.88671 0.90276 0.91960 0.87491 0.77472 0.92861 0.88201 0.94087 0.93950 0.94661 0.94706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.90 37.16 0.37 -0.70 16 2 C -0.05 -0.37 6.51 -27.88 -0.18 -0.56 16 3 C 0.05 0.65 6.64 -13.34 -0.09 0.56 16 4 N -0.47 -7.12 10.50 -7.74 -0.08 -7.20 16 5 C 0.12 2.04 6.79 -83.89 -0.57 1.47 16 6 C -0.08 -1.28 9.31 36.01 0.34 -0.95 16 7 C -0.21 -3.57 6.47 -37.00 -0.24 -3.81 16 8 C 0.35 7.05 7.94 -14.58 -0.12 6.93 16 9 O -0.50 -9.71 12.01 -17.65 -0.21 -9.92 16 10 N -0.46 -10.67 6.71 -54.07 -0.36 -11.03 16 11 C 0.20 5.35 2.30 -69.09 -0.16 5.19 16 12 H 0.03 0.83 6.73 -51.93 -0.35 0.48 16 13 C -0.50 -14.28 8.84 -34.44 -0.30 -14.59 16 14 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 15 C 0.06 1.70 5.29 -17.82 -0.09 1.61 16 16 N -0.89 -25.68 11.29 55.43 0.63 -25.06 16 17 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 21 C -0.11 -2.65 5.45 -26.73 -0.15 -2.80 16 22 C -0.14 -3.12 9.80 37.16 0.36 -2.76 16 23 S 0.12 1.41 22.10 -107.50 -2.38 -0.97 16 24 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.11 2.06 6.39 -51.93 -0.33 1.73 16 32 H 0.38 5.25 7.84 45.56 0.36 5.61 16 33 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 34 H 0.10 2.73 5.95 -51.93 -0.31 2.42 16 35 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.03 0.72 7.75 -51.93 -0.40 0.32 16 LS Contribution 330.91 15.07 4.99 4.99 Total: -1.00 -31.75 330.91 -8.08 -39.83 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -4.81 Total: 3.06 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: -0.83 Total: -10.39 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: 0.18 Total: -43.29 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: -0.21 Total: -9.92 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -2.38 Total: -0.97 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.75 -8.08 -39.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330876945.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.800 kcal (2) G-P(sol) polarization free energy of solvation -31.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds