Wall clock time and date at job start Tue Mar 31 2020 05:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33638 * 122.75034 * 2 1 4 4 S 1.76194 * 107.92598 * 180.02562 * 3 2 1 5 5 C 1.70980 * 90.28406 * 359.97438 * 4 3 2 6 6 C 1.50696 * 124.92117 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47558 * 270.02975 * 6 5 4 8 8 C 1.50696 * 109.47224 * 179.97438 * 7 6 5 9 9 O 1.21279 * 120.00235 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99900 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99912 * 359.97438 * 10 8 7 12 12 C 1.46495 * 120.00002 * 179.97438 * 10 8 7 13 13 H 1.09002 * 109.47308 * 359.97438 * 12 10 8 14 14 C 1.53001 * 109.47398 * 119.99746 * 12 10 8 15 15 C 1.50702 * 109.47171 * 239.99670 * 12 10 8 16 16 H 1.08001 * 120.00089 * 325.05166 * 15 12 10 17 17 C 1.37880 * 119.99796 * 145.04858 * 15 12 10 18 18 N 1.31514 * 119.99543 * 176.46253 * 17 15 12 19 19 Si 1.86794 * 120.00028 * 356.46680 * 17 15 12 20 20 H 1.48499 * 109.47255 * 274.92138 * 19 17 15 21 21 H 1.48497 * 109.47373 * 34.92801 * 19 17 15 22 22 H 1.48507 * 109.46963 * 154.92420 * 19 17 15 23 23 N 1.29032 * 110.16462 * 0.24636 * 5 4 3 24 24 H 1.09004 * 109.47228 * 89.97241 * 1 2 3 25 25 H 1.08999 * 109.47020 * 209.97356 * 1 2 3 26 26 H 1.08995 * 109.47489 * 329.97323 * 1 2 3 27 27 H 1.07999 * 126.03772 * 0.03992 * 3 2 1 28 28 H 1.08999 * 109.47585 * 150.02262 * 6 5 4 29 29 H 1.09002 * 109.46793 * 30.02980 * 6 5 4 30 30 H 1.08999 * 109.46794 * 59.99354 * 7 6 5 31 31 H 1.09002 * 109.47073 * 299.99834 * 7 6 5 32 32 H 1.09003 * 109.47307 * 270.00158 * 11 10 8 33 33 H 1.09006 * 109.47299 * 30.00251 * 11 10 8 34 34 H 1.09005 * 109.47170 * 150.00291 * 11 10 8 35 35 H 1.09001 * 109.47150 * 305.54548 * 14 12 10 36 36 H 1.09004 * 109.47201 * 65.54154 * 14 12 10 37 37 H 1.08997 * 109.47748 * 185.54369 * 14 12 10 38 38 H 0.97005 * 119.99553 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1239 0.0000 4 16 3.9333 0.6731 -0.0007 5 6 3.5040 -0.9819 -0.0002 6 6 4.4835 -2.1271 -0.0010 7 6 4.8142 -2.5144 -1.4438 8 6 5.7942 -3.6593 -1.4445 9 8 6.1895 -4.1198 -0.3945 10 7 6.2321 -4.1707 -2.6121 11 6 5.7550 -3.6141 -3.8804 12 6 7.1851 -5.2833 -2.6128 13 1 7.4223 -5.5592 -1.5853 14 6 6.5679 -6.4832 -3.3340 15 6 8.4461 -4.8641 -3.3237 16 1 8.3920 -4.1951 -4.1699 17 6 9.6688 -5.3346 -2.8938 18 7 10.7621 -5.0250 -3.5559 19 14 9.7722 -6.4118 -1.3713 20 1 9.8388 -5.5535 -0.1613 21 1 8.5699 -7.2802 -1.2966 22 1 10.9902 -7.2581 -1.4455 23 7 2.2199 -1.1084 -0.0048 24 1 -0.3634 0.0005 -1.0277 25 1 -0.3633 -0.8902 0.5134 26 1 -0.3634 0.8897 0.5142 27 1 1.8392 2.1308 0.0006 28 1 4.0436 -2.9818 0.5129 29 1 5.3962 -1.8249 0.5124 30 1 5.2541 -1.6597 -1.9576 31 1 3.9015 -2.8167 -1.9572 32 1 4.8561 -4.1446 -4.1948 33 1 5.5257 -2.5565 -3.7497 34 1 6.5281 -3.7270 -4.6405 35 1 5.6067 -6.7247 -2.8803 36 1 6.4218 -6.2389 -4.3863 37 1 7.2353 -7.3408 -3.2494 38 1 11.6224 -5.3557 -3.2533 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330955680.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:16 Heat of formation + Delta-G solvation = -1.787745 kcal Electronic energy + Delta-G solvation = -19627.700718 eV Core-core repulsion = 16596.875762 eV Total energy + Delta-G solvation = -3030.824956 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.05179 -39.19835 -35.58474 -34.12829 -32.68843 -31.28724 -30.13098 -27.82144 -26.33073 -25.88723 -25.21520 -22.44477 -20.64951 -19.81052 -18.27024 -17.79524 -17.22402 -16.27081 -15.63050 -15.37911 -15.09608 -14.92168 -14.18314 -13.81864 -13.33690 -13.21296 -12.99867 -12.73944 -12.59668 -12.48107 -12.26788 -12.15837 -12.00555 -11.58829 -11.44836 -11.34765 -11.09605 -11.01893 -10.70825 -10.42839 -9.79569 -9.74375 -9.53935 -9.30338 -9.08459 -8.78438 -8.62241 -7.68375 -6.17810 -4.20280 0.56216 1.24364 1.63442 2.62428 3.28120 3.31925 3.38583 3.45435 3.72996 4.03341 4.38095 4.74141 4.93429 5.03384 5.07127 5.12992 5.20165 5.32218 5.35028 5.46857 5.53164 5.66972 5.78196 5.90559 5.98488 6.06316 6.14910 6.27425 6.34914 6.40623 6.58671 6.92903 7.07351 7.46856 7.63227 7.63531 8.12591 8.49177 8.82855 8.91906 9.44766 10.94050 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.029875 B = 0.003661 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.018968 B = 7647.278523 C = 7815.650905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.067 3.933 3 C -0.273 4.273 4 S 0.121 5.879 5 C 0.066 3.934 6 C -0.030 4.030 7 C -0.132 4.132 8 C 0.506 3.494 9 O -0.558 6.558 10 N -0.588 5.588 11 C 0.082 3.918 12 C 0.222 3.778 13 H 0.064 0.936 14 C -0.147 4.147 15 C -0.526 4.526 16 H 0.078 0.922 17 C 0.079 3.921 18 N -0.892 5.892 19 Si 0.875 3.125 20 H -0.271 1.271 21 H -0.263 1.263 22 H -0.288 1.288 23 N -0.474 5.474 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.174 0.826 28 H 0.103 0.897 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.044 0.956 33 H 0.056 0.944 34 H 0.082 0.918 35 H 0.026 0.974 36 H 0.049 0.951 37 H 0.055 0.945 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.660 11.384 4.299 21.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.065 4.065 3 C -0.412 4.412 4 S 0.376 5.624 5 C -0.212 4.212 6 C -0.072 4.072 7 C -0.173 4.173 8 C 0.293 3.707 9 O -0.437 6.437 10 N -0.319 5.319 11 C -0.062 4.062 12 C 0.122 3.878 13 H 0.082 0.918 14 C -0.205 4.205 15 C -0.564 4.564 16 H 0.096 0.904 17 C -0.125 4.125 18 N -0.529 5.529 19 Si 0.702 3.298 20 H -0.196 1.196 21 H -0.188 1.188 22 H -0.214 1.214 23 N -0.189 5.189 24 H 0.093 0.907 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.192 0.808 28 H 0.121 0.879 29 H 0.114 0.886 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.045 0.955 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.492 11.133 4.811 20.472 hybrid contribution -0.709 -0.339 0.539 0.953 sum -17.201 10.794 5.350 21.000 Atomic orbital electron populations 1.20350 0.87238 1.03238 1.02922 1.20338 0.98255 0.86606 1.01321 1.26785 0.95383 1.03845 1.15209 1.84138 1.07064 1.03311 1.67876 1.27180 0.93978 0.98364 1.01667 1.20055 0.95690 0.93722 0.97690 1.21651 1.00030 0.98648 0.96998 1.20296 0.82022 0.84104 0.84254 1.90643 1.59507 1.62413 1.31169 1.48306 1.43877 1.34945 1.04734 1.21648 0.99543 0.97245 0.87781 1.19301 0.87461 0.82780 0.98293 0.91787 1.22217 0.98464 0.99399 1.00466 1.21127 0.88895 1.30485 1.15884 0.90378 1.24959 0.95459 0.95531 0.96503 1.69889 0.98464 1.45041 1.39528 0.86886 0.77599 0.81192 0.84118 1.19589 1.18797 1.21399 1.66170 1.04559 1.31477 1.16676 0.90654 0.90573 0.90870 0.80840 0.87902 0.88621 0.89027 0.88822 0.93781 0.92485 0.89933 0.95493 0.93167 0.92647 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.31 36.01 0.37 -0.24 16 2 C 0.07 0.74 6.74 -84.22 -0.57 0.18 16 3 C -0.27 -2.66 11.13 29.12 0.32 -2.33 16 4 S 0.12 1.29 23.18 -107.50 -2.49 -1.20 16 5 C 0.07 0.85 6.64 -13.46 -0.09 0.76 16 6 C -0.03 -0.42 5.09 -27.89 -0.14 -0.56 16 7 C -0.13 -1.90 4.23 -27.89 -0.12 -2.01 16 8 C 0.51 9.98 7.67 -10.99 -0.08 9.90 16 9 O -0.56 -13.01 15.31 5.56 0.09 -12.93 16 10 N -0.59 -12.04 2.75 -175.26 -0.48 -12.52 16 11 C 0.08 1.32 9.40 59.85 0.56 1.88 16 12 C 0.22 5.32 2.27 -69.08 -0.16 5.17 16 13 H 0.06 1.69 4.11 -51.93 -0.21 1.47 16 14 C -0.15 -3.09 9.09 37.16 0.34 -2.76 16 15 C -0.53 -14.33 8.72 -34.44 -0.30 -14.63 16 16 H 0.08 2.24 6.82 -52.49 -0.36 1.88 16 17 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 18 N -0.89 -26.69 13.96 55.43 0.77 -25.91 16 19 Si 0.88 22.13 26.91 -169.99 -4.57 17.55 16 20 H -0.27 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.26 -6.43 6.73 56.52 0.38 -6.05 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 23 N -0.47 -6.38 10.53 -8.06 -0.08 -6.47 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 27 H 0.17 1.19 8.06 -52.49 -0.42 0.76 16 28 H 0.10 1.51 8.10 -51.93 -0.42 1.09 16 29 H 0.10 1.32 8.10 -51.93 -0.42 0.90 16 30 H 0.09 1.18 7.40 -51.93 -0.38 0.80 16 31 H 0.09 1.23 8.11 -51.93 -0.42 0.81 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.76 6.44 -51.93 -0.33 0.43 16 34 H 0.08 1.45 6.56 -51.93 -0.34 1.11 16 35 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.05 0.99 7.86 -51.93 -0.41 0.58 16 37 H 0.05 1.18 7.97 -51.93 -0.41 0.77 16 38 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 328.89 15.07 4.96 4.96 Total: -1.00 -32.84 328.89 -7.19 -40.03 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -5.41 Total: -1.01 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: 0.04 Total: -2.49 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: 0.21 Total: -44.90 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.09 Total: -12.93 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.57 Total: 17.55 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -2.49 Total: -1.20 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.84 -7.19 -40.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330955680.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.239 kcal (2) G-P(sol) polarization free energy of solvation -32.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds