Wall clock time and date at job start Tue Mar 31 2020 05:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.47221 * 2 1 4 4 C 1.33643 * 122.75090 * 124.99770 * 3 2 1 5 5 S 1.76202 * 107.92390 * 179.75851 * 4 3 2 6 6 C 1.70979 * 90.28294 * 0.28359 * 5 4 3 7 7 C 1.50695 * 124.91416 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.47377 * 269.69293 * 7 6 5 9 9 O 1.21282 * 119.99614 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00153 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99811 * 0.02562 * 10 8 7 12 12 C 1.46497 * 119.99848 * 180.02562 * 10 8 7 13 13 H 1.08996 * 109.47049 * 359.97438 * 12 10 8 14 14 C 1.52997 * 109.47188 * 120.00098 * 12 10 8 15 15 C 1.50706 * 109.46582 * 239.99950 * 12 10 8 16 16 H 1.07999 * 120.00196 * 359.97438 * 15 12 10 17 17 C 1.37879 * 119.99394 * 179.97438 * 15 12 10 18 18 N 1.31514 * 120.00338 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 119.99424 * 180.02562 * 17 15 12 20 20 H 1.48501 * 109.47474 * 90.00322 * 19 17 15 21 21 H 1.48510 * 109.47116 * 210.00055 * 19 17 15 22 22 H 1.48498 * 109.47278 * 329.99887 * 19 17 15 23 23 N 1.29026 * 110.16752 * 359.70855 * 6 5 4 24 24 H 1.08998 * 109.47048 * 300.00655 * 1 2 3 25 25 H 1.09003 * 109.46828 * 59.99978 * 1 2 3 26 26 H 1.08994 * 109.47284 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47243 * 239.99862 * 2 1 3 28 28 H 1.08997 * 109.47144 * 119.99727 * 2 1 3 29 29 H 1.07997 * 126.03458 * 359.97438 * 4 3 2 30 30 H 1.09009 * 109.47044 * 149.69260 * 7 6 5 31 31 H 1.08996 * 109.47235 * 29.70077 * 7 6 5 32 32 H 1.09005 * 109.46851 * 270.00168 * 11 10 8 33 33 H 1.08997 * 109.47129 * 29.99442 * 11 10 8 34 34 H 1.08993 * 109.46804 * 150.00082 * 11 10 8 35 35 H 1.09002 * 109.47153 * 299.99573 * 14 12 10 36 36 H 1.09001 * 109.46832 * 179.97438 * 14 12 10 37 37 H 1.09004 * 109.47261 * 59.99745 * 14 12 10 38 38 H 0.96996 * 119.99730 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8811 1.8876 0.9207 5 16 3.2105 3.5777 0.5473 6 6 2.1677 3.4911 -0.8049 7 6 1.8760 4.6332 -1.7437 8 6 0.6809 5.4026 -1.2428 9 8 0.1215 5.0577 -0.2235 10 7 0.2338 6.4739 -1.9276 11 6 0.9093 6.8901 -3.1592 12 6 -0.9276 7.2221 -1.4403 13 1 -1.2926 6.7672 -0.5195 14 6 -0.5225 8.6721 -1.1677 15 6 -2.0171 7.1921 -2.4811 16 1 -1.8599 6.6685 -3.4125 17 6 -3.2146 7.8332 -2.2442 18 7 -3.4058 8.4713 -1.1102 19 14 -4.5653 7.7954 -3.5340 20 1 -5.4367 6.6152 -3.3039 21 1 -5.3764 9.0358 -3.4379 22 1 -3.9567 7.7055 -4.8856 23 7 1.6710 2.3047 -0.9082 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.2949 1.3267 1.7457 30 1 1.6646 4.2408 -2.7385 31 1 2.7407 5.2950 -1.7904 32 1 1.6985 7.6022 -2.9178 33 1 1.3439 6.0180 -3.6477 34 1 0.1882 7.3597 -3.8280 35 1 0.2655 8.6937 -0.4149 36 1 -1.3868 9.2288 -0.8056 37 1 -0.1577 9.1267 -2.0888 38 1 -4.2481 8.9225 -0.9437 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330958197.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:11 Heat of formation + Delta-G solvation = 1.048516 kcal Electronic energy + Delta-G solvation = -19923.014731 eV Core-core repulsion = 16892.312765 eV Total energy + Delta-G solvation = -3030.701966 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.96924 -38.90415 -35.38897 -33.84733 -32.89980 -31.25711 -29.44715 -28.12641 -26.09671 -25.22099 -24.53528 -22.76463 -20.91489 -19.59330 -18.40853 -17.36716 -16.69261 -16.26814 -15.54474 -15.16541 -14.92097 -14.68177 -14.13990 -13.71849 -13.71342 -13.07676 -12.87618 -12.52613 -12.46158 -12.34341 -11.83209 -11.72842 -11.56571 -11.50051 -11.19865 -11.03349 -10.86605 -10.85057 -10.70005 -10.24256 -10.16780 -9.50673 -9.34291 -9.17976 -8.98719 -8.54929 -8.41813 -7.61531 -6.07037 -4.14975 0.82411 1.50120 1.86932 2.89338 3.27842 3.30998 3.34731 3.37408 3.87603 4.20222 4.40765 4.83567 4.99346 5.14969 5.22938 5.25361 5.27542 5.32255 5.49930 5.55730 5.68401 5.79262 5.86000 6.00667 6.10267 6.23852 6.35706 6.40447 6.74862 6.82384 7.05629 7.39907 7.52584 7.71359 7.90921 8.01242 8.19475 8.49437 8.82334 9.01528 9.51382 10.98349 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.021561 B = 0.004399 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.340656 B = 6363.120066 C = 7034.763602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.045 4.045 3 C 0.074 3.926 4 C -0.271 4.271 5 S 0.122 5.878 6 C 0.088 3.912 7 C -0.070 4.070 8 C 0.510 3.490 9 O -0.542 6.542 10 N -0.591 5.591 11 C 0.080 3.920 12 C 0.258 3.742 13 H 0.063 0.937 14 C -0.146 4.146 15 C -0.526 4.526 16 H 0.060 0.940 17 C 0.065 3.935 18 N -0.888 5.888 19 Si 0.899 3.101 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 N -0.463 5.463 24 H 0.054 0.946 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.173 0.827 30 H 0.119 0.881 31 H 0.108 0.892 32 H 0.045 0.955 33 H 0.054 0.946 34 H 0.083 0.917 35 H 0.011 0.989 36 H 0.093 0.907 37 H 0.030 0.970 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.393 -10.182 -0.045 17.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.085 4.085 3 C -0.058 4.058 4 C -0.410 4.410 5 S 0.378 5.622 6 C -0.191 4.191 7 C -0.114 4.114 8 C 0.294 3.706 9 O -0.420 6.420 10 N -0.322 5.322 11 C -0.064 4.064 12 C 0.158 3.842 13 H 0.081 0.919 14 C -0.204 4.204 15 C -0.565 4.565 16 H 0.078 0.922 17 C -0.138 4.138 18 N -0.526 5.526 19 Si 0.726 3.274 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.199 1.199 23 N -0.177 5.177 24 H 0.073 0.927 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.190 0.810 30 H 0.137 0.863 31 H 0.126 0.874 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.101 0.899 35 H 0.030 0.970 36 H 0.112 0.888 37 H 0.049 0.951 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 14.212 -9.524 0.603 17.119 hybrid contribution -1.065 -0.720 -0.710 1.468 sum 13.146 -10.244 -0.106 16.667 Atomic orbital electron populations 1.21678 0.94095 1.01344 1.03238 1.20105 0.96882 0.88966 1.02517 1.20245 0.96686 0.97410 0.91479 1.26740 1.09222 0.97769 1.07283 1.83815 1.43874 1.09218 1.25288 1.26217 0.98110 0.95754 0.98973 1.20397 0.99474 0.92820 0.98701 1.19938 0.84742 0.81196 0.84728 1.90689 1.58752 1.67485 1.25038 1.48212 1.31686 1.28378 1.23952 1.21659 0.97569 0.99312 0.87848 1.18955 0.80686 0.87884 0.96645 0.91914 1.22079 1.00623 0.99733 0.97972 1.21316 0.98646 1.33669 1.02822 0.92196 1.24891 0.98210 0.95008 0.95653 1.69879 1.25135 1.34198 1.23372 0.86491 0.81768 0.77509 0.81591 1.20615 1.21130 1.19891 1.65973 1.23413 1.00811 1.27550 0.92677 0.91509 0.92516 0.90427 0.90618 0.80959 0.86307 0.87365 0.93683 0.92722 0.89856 0.97023 0.88828 0.95111 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.81 37.15 0.36 -1.43 16 2 C -0.04 -0.50 6.43 -27.89 -0.18 -0.68 16 3 C 0.07 1.07 6.08 -84.22 -0.51 0.56 16 4 C -0.27 -3.47 11.07 29.12 0.32 -3.15 16 5 S 0.12 1.67 23.18 -107.50 -2.49 -0.83 16 6 C 0.09 1.43 5.88 -13.46 -0.08 1.35 16 7 C -0.07 -1.07 4.84 -29.04 -0.14 -1.21 16 8 C 0.51 10.57 7.67 -10.98 -0.08 10.49 16 9 O -0.54 -13.64 15.36 5.56 0.09 -13.56 16 10 N -0.59 -12.46 2.75 -175.26 -0.48 -12.94 16 11 C 0.08 1.28 9.24 59.85 0.55 1.84 16 12 C 0.26 6.60 2.64 -69.08 -0.18 6.42 16 13 H 0.06 1.88 6.90 -51.93 -0.36 1.52 16 14 C -0.15 -3.46 8.97 37.16 0.33 -3.13 16 15 C -0.53 -14.22 7.99 -34.44 -0.28 -14.49 16 16 H 0.06 1.59 7.33 -52.49 -0.38 1.21 16 17 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 18 N -0.89 -25.21 11.32 55.43 0.63 -24.59 16 19 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 23 N -0.46 -7.87 10.35 -8.06 -0.08 -7.95 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.08 0.67 8.03 -51.93 -0.42 0.25 16 29 H 0.17 1.64 8.06 -52.49 -0.42 1.22 16 30 H 0.12 1.62 7.40 -51.92 -0.38 1.23 16 31 H 0.11 1.26 8.11 -51.93 -0.42 0.84 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.69 6.44 -51.93 -0.33 0.36 16 34 H 0.08 1.44 7.02 -51.93 -0.36 1.08 16 35 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 37 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 38 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 329.85 15.07 4.97 4.97 Total: -1.00 -32.80 329.85 -7.84 -40.63 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -5.47 Total: -0.08 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 0.03 Total: -1.75 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: 0.06 Total: -45.48 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: 0.09 Total: -13.56 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -2.49 Total: -0.83 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.80 -7.84 -40.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330958197.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.682 kcal (2) G-P(sol) polarization free energy of solvation -32.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds