Wall clock time and date at job start Tue Mar 31 2020 05:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31120 * 122.89689 * 2 1 4 4 C 1.29320 * 117.33374 * 180.26783 * 3 2 1 5 5 C 1.50702 * 124.80922 * 179.72982 * 4 3 2 6 6 C 1.52994 * 109.47125 * 59.99207 * 5 4 3 7 7 C 1.52993 * 109.47051 * 179.97438 * 5 4 3 8 8 C 1.53007 * 109.46669 * 299.99627 * 5 4 3 9 9 S 1.70955 * 110.38075 * 359.74612 * 4 3 2 10 10 C 1.35432 * 122.89514 * 179.79780 * 2 1 3 11 11 C 1.47076 * 126.12134 * 0.03745 * 10 2 1 12 12 O 1.35311 * 119.99838 * 174.15148 * 11 10 2 13 13 N 1.30391 * 119.99708 * 354.14902 * 11 10 2 14 14 C 1.46501 * 119.99728 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.46911 * 115.00141 * 14 13 11 16 16 H 1.07992 * 120.00200 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99486 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00290 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99697 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46962 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46873 * 119.99878 * 19 17 15 22 22 H 1.48499 * 109.47319 * 239.99949 * 19 17 15 23 23 H 1.08991 * 109.47188 * 264.41824 * 1 2 3 24 24 H 1.08998 * 109.47215 * 24.42039 * 1 2 3 25 25 H 1.09006 * 109.47030 * 144.41437 * 1 2 3 26 26 H 1.09007 * 109.47186 * 60.00184 * 6 5 4 27 27 H 1.09000 * 109.47390 * 179.97438 * 6 5 4 28 28 H 1.08999 * 109.47617 * 300.00618 * 6 5 4 29 29 H 1.09004 * 109.47384 * 59.99958 * 7 5 4 30 30 H 1.08999 * 109.46902 * 179.97438 * 7 5 4 31 31 H 1.08995 * 109.47652 * 299.99997 * 7 5 4 32 32 H 1.08999 * 109.46939 * 60.00077 * 8 5 4 33 33 H 1.09000 * 109.46474 * 179.97438 * 8 5 4 34 34 H 1.09004 * 109.47080 * 299.99622 * 8 5 4 35 35 H 0.96697 * 114.00371 * 5.04505 * 12 11 10 36 36 H 1.09000 * 109.47133 * 355.00478 * 14 13 11 37 37 H 1.08997 * 109.47129 * 234.99996 * 14 13 11 38 38 H 0.97003 * 119.99561 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2192 1.1009 0.0000 4 6 3.5063 0.9756 -0.0054 5 6 4.4824 2.1237 -0.0121 6 6 4.2686 2.9822 1.2361 7 6 5.9117 1.5779 -0.0166 8 6 4.2578 2.9767 -1.2624 9 16 3.9435 -0.6771 -0.0042 10 6 2.2426 -1.1372 0.0040 11 6 1.7159 -2.5104 0.0081 12 8 2.5621 -3.5599 -0.1075 13 7 0.4335 -2.7164 0.1232 14 6 -0.0912 -4.0842 0.1266 15 6 -0.7069 -4.3826 1.4694 16 1 -0.7070 -3.6290 2.2429 17 6 -1.2692 -5.6182 1.7106 18 7 -1.2686 -6.5362 0.7688 19 14 -2.0318 -5.9883 3.3753 20 1 -1.9051 -4.7976 4.2535 21 1 -3.4680 -6.3219 3.1985 22 1 -1.3291 -7.1395 3.9967 23 1 -0.3633 -0.0999 1.0227 24 1 -0.3633 0.9357 -0.4249 25 1 -0.3633 -0.8358 -0.5981 26 1 4.4286 2.3746 2.1268 27 1 4.9750 3.8124 1.2315 28 1 3.2504 3.3710 1.2397 29 1 6.0642 0.9660 -0.9057 30 1 6.6177 2.4083 -0.0219 31 1 6.0715 0.9704 0.8742 32 1 3.2395 3.3655 -1.2588 33 1 4.9635 3.8073 -1.2670 34 1 4.4101 2.3650 -2.1517 35 1 3.4970 -3.3129 -0.1101 36 1 0.7212 -4.7855 -0.0644 37 1 -0.8485 -4.1849 -0.6508 38 1 -1.6639 -7.4055 0.9388 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331209651.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:23 Heat of formation + Delta-G solvation = 0.660413 kcal Electronic energy + Delta-G solvation = -19665.815537 eV Core-core repulsion = 16635.096741 eV Total energy + Delta-G solvation = -3030.718795 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.10749 -38.26149 -36.88035 -34.02223 -32.44969 -30.95230 -28.47358 -27.73017 -27.51569 -26.61219 -24.85102 -22.95596 -20.66070 -20.03485 -19.42059 -17.50544 -16.85965 -16.25294 -15.39723 -15.25547 -14.70535 -14.27685 -14.18122 -14.08907 -13.56975 -13.43909 -12.79019 -12.61057 -12.49012 -12.38194 -12.24163 -12.01545 -11.93354 -11.64774 -11.57687 -11.29249 -11.25682 -11.10017 -10.90968 -10.71892 -10.11817 -9.91133 -9.60915 -9.47301 -8.79508 -8.76518 -8.25062 -7.80583 -6.03874 -4.06949 0.49323 1.19893 1.64946 2.68021 3.30523 3.36529 3.41410 3.50545 3.81685 4.26596 4.44707 4.48495 4.60585 4.75550 4.86809 5.11899 5.25692 5.30839 5.33382 5.41534 5.46892 5.56502 5.61985 5.66388 5.78958 5.98231 6.02579 6.03459 6.16438 6.24336 6.31878 6.82825 7.44491 7.47259 7.77085 7.90256 8.04866 8.27620 8.73303 9.02802 9.56543 11.06090 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.032141 B = 0.003797 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.953614 B = 7372.541115 C = 7573.753619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.121 3.879 3 N -0.464 5.464 4 C 0.062 3.938 5 C 0.012 3.988 6 C -0.134 4.134 7 C -0.155 4.155 8 C -0.134 4.134 9 S 0.123 5.877 10 C -0.218 4.218 11 C 0.349 3.651 12 O -0.498 6.498 13 N -0.471 5.471 14 C 0.174 3.826 15 C -0.506 4.506 16 H 0.061 0.939 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.902 3.098 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.283 1.283 23 H 0.081 0.919 24 H 0.062 0.938 25 H 0.102 0.898 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.376 0.624 36 H 0.021 0.979 37 H 0.046 0.954 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.285 18.059 -2.881 23.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.015 4.015 3 N -0.178 5.178 4 C -0.215 4.215 5 C 0.008 3.992 6 C -0.193 4.193 7 C -0.213 4.213 8 C -0.192 4.192 9 S 0.380 5.620 10 C -0.340 4.340 11 C 0.121 3.879 12 O -0.292 6.292 13 N -0.205 5.205 14 C 0.048 3.952 15 C -0.545 4.545 16 H 0.080 0.920 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.730 3.270 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.210 1.210 23 H 0.099 0.901 24 H 0.081 0.919 25 H 0.120 0.880 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.226 0.774 36 H 0.039 0.961 37 H 0.063 0.937 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 14.678 17.745 -2.858 23.206 hybrid contribution -0.231 -0.859 0.840 1.224 sum 14.447 16.886 -2.018 22.314 Atomic orbital electron populations 1.20552 0.85592 1.03144 1.04167 1.20570 0.98793 0.84629 0.97475 1.65913 1.04117 1.31569 1.16216 1.27077 0.94209 0.96774 1.03482 1.19233 0.91220 0.90663 0.98088 1.21844 1.02974 0.98951 0.95542 1.22035 0.94547 1.01894 1.02827 1.21842 1.02956 0.98974 0.95479 1.83524 1.05429 1.03792 1.69235 1.24357 0.95207 0.97324 1.17083 1.20618 0.87879 0.81986 0.97412 1.85205 1.19538 1.33970 1.90437 1.72862 1.05548 1.29096 1.12984 1.19787 0.95341 0.81881 0.98228 1.21074 1.37350 0.98532 0.97541 0.92029 1.24987 0.96154 0.95960 0.97393 1.69975 1.45343 1.05203 1.32922 0.86373 0.78854 0.78247 0.83574 1.19661 1.20811 1.20954 0.90088 0.91948 0.87964 0.92423 0.91671 0.91319 0.91746 0.90682 0.91713 0.91334 0.91674 0.92453 0.77352 0.96133 0.93662 0.92830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.25 9.34 36.01 0.34 -0.92 16 2 C 0.12 2.04 6.79 -83.90 -0.57 1.47 16 3 N -0.46 -6.97 10.48 -7.74 -0.08 -7.05 16 4 C 0.06 0.78 5.78 -13.33 -0.08 0.70 16 5 C 0.01 0.11 0.99 -155.66 -0.15 -0.05 16 6 C -0.13 -1.13 8.45 37.15 0.31 -0.81 16 7 C -0.16 -1.07 7.53 37.15 0.28 -0.79 16 8 C -0.13 -1.09 8.45 37.16 0.31 -0.77 16 9 S 0.12 1.52 20.48 -107.50 -2.20 -0.68 16 10 C -0.22 -3.72 6.47 -37.00 -0.24 -3.96 16 11 C 0.35 7.25 7.94 -14.58 -0.12 7.14 16 12 O -0.50 -9.93 12.01 -17.63 -0.21 -10.14 16 13 N -0.47 -11.34 7.64 -60.60 -0.46 -11.80 16 14 C 0.17 4.91 6.09 -5.19 -0.03 4.88 16 15 C -0.51 -15.09 9.39 -34.44 -0.32 -15.41 16 16 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.90 -27.33 13.29 55.43 0.74 -26.59 16 19 Si 0.90 22.28 29.54 -169.99 -5.02 17.26 16 20 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 23 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 24 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 25 H 0.10 1.88 6.34 -51.93 -0.33 1.55 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.44 7.92 -51.93 -0.41 0.03 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.45 7.92 -51.93 -0.41 0.04 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.38 5.37 7.85 45.56 0.36 5.73 16 36 H 0.02 0.62 6.74 -51.93 -0.35 0.27 16 37 H 0.05 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 331.74 15.07 5.00 5.00 Total: -1.00 -33.55 331.74 -7.52 -41.07 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -4.92 Total: -0.09 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -0.36 Total: -6.97 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: 0.19 Total: -45.45 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: -0.21 Total: -10.14 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -2.20 Total: -0.68 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.55 -7.52 -41.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331209651.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.730 kcal (2) G-P(sol) polarization free energy of solvation -33.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds