Wall clock time and date at job start Tue Mar 31 2020 06:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.46924 * 2 1 4 4 H 1.09000 * 109.47460 * 54.24290 * 3 2 1 5 5 C 1.50704 * 109.47185 * 174.23505 * 3 2 1 6 6 H 1.08000 * 119.99510 * 94.93197 * 5 3 2 7 7 C 1.37872 * 120.00418 * 274.94235 * 5 3 2 8 8 N 1.31517 * 119.99990 * 355.32128 * 7 5 3 9 9 Si 1.86803 * 120.00240 * 175.32277 * 7 5 3 10 10 H 1.48504 * 109.46810 * 60.00097 * 9 7 5 11 11 H 1.48501 * 109.47111 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47115 * 300.00095 * 9 7 5 13 13 N 1.46495 * 109.47490 * 294.23528 * 3 2 1 14 14 C 1.30391 * 120.00027 * 117.92779 * 13 3 2 15 15 O 1.35320 * 120.00359 * 185.85055 * 14 13 3 16 16 C 1.47071 * 120.00094 * 5.85285 * 14 13 3 17 17 S 1.76212 * 126.11879 * 273.93317 * 16 14 13 18 18 C 1.70958 * 90.31749 * 179.97438 * 17 16 14 19 19 N 1.29326 * 110.37943 * 0.34528 * 18 17 16 20 20 C 1.31123 * 117.33189 * 359.72452 * 19 18 17 21 21 C 1.50705 * 122.89104 * 180.02562 * 20 19 18 22 22 C 1.53000 * 109.46961 * 304.59652 * 21 20 19 23 23 C 1.52996 * 109.47211 * 64.60214 * 21 20 19 24 24 H 1.09004 * 109.47112 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47293 * 300.00004 * 1 2 3 26 26 H 1.09000 * 109.47247 * 60.00369 * 1 2 3 27 27 H 1.08999 * 109.47293 * 239.99995 * 2 1 3 28 28 H 1.09004 * 109.46679 * 120.00096 * 2 1 3 29 29 H 0.97005 * 119.99536 * 5.31657 * 8 7 5 30 30 H 0.96695 * 114.00160 * 185.00792 * 15 14 13 31 31 H 1.07994 * 124.81202 * 180.02562 * 18 17 16 32 32 H 1.08998 * 109.46459 * 184.60416 * 21 20 19 33 33 H 1.09000 * 109.46917 * 60.00499 * 22 21 20 34 34 H 1.08998 * 109.46711 * 179.97438 * 22 21 20 35 35 H 1.08998 * 109.47393 * 300.00453 * 22 21 20 36 36 H 1.09000 * 109.47129 * 299.99784 * 23 21 20 37 37 H 1.09002 * 109.47255 * 59.99632 * 23 21 20 38 38 H 1.09005 * 109.46722 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.5949 1.9852 0.8339 5 6 3.5402 1.4449 0.1427 6 1 4.1661 1.4950 -0.7360 7 6 4.1138 1.3831 1.3950 8 7 3.3544 1.4148 2.4683 9 14 5.9694 1.2542 1.5671 10 1 6.6082 2.4381 0.9380 11 1 6.3306 1.2039 3.0067 12 1 6.4444 0.0190 0.8936 13 7 1.6682 2.0919 -1.2594 14 6 0.8795 3.1301 -1.2496 15 8 0.4408 3.6578 -2.4159 16 6 0.4665 3.7278 0.0292 17 16 -0.9030 3.2241 1.0170 18 6 -0.5346 4.4376 2.1635 19 7 0.5018 5.1133 1.7868 20 6 1.0666 4.7683 0.6548 21 6 2.2793 5.4690 0.0984 22 6 1.9908 6.9664 -0.0261 23 6 3.4678 5.2548 1.0376 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.3885 1.4038 2.3795 30 1 -0.0753 4.4687 -2.3113 31 1 -1.0917 4.6180 3.0709 32 1 2.5149 5.0615 -0.8847 33 1 1.7550 7.3738 0.9570 34 1 2.8680 7.4731 -0.4281 35 1 1.1440 7.1189 -0.6952 36 1 3.2321 5.6623 2.0207 37 1 3.6733 4.1880 1.1262 38 1 4.3450 5.7612 0.6348 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331351713.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:34 Heat of formation + Delta-G solvation = -21.226311 kcal Electronic energy + Delta-G solvation = -21297.228287 eV Core-core repulsion = 18265.560412 eV Total energy + Delta-G solvation = -3031.667875 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.35630 -39.36624 -37.63164 -35.87181 -34.46578 -33.12610 -30.74945 -28.48930 -28.04767 -26.59462 -25.20669 -23.45696 -23.09278 -21.62922 -20.44069 -18.83421 -18.67498 -18.22530 -17.48730 -16.38685 -15.72241 -15.59146 -15.37748 -15.17806 -15.05030 -14.71649 -14.55237 -14.40958 -14.16493 -13.83492 -13.44626 -13.16088 -13.04213 -12.77919 -12.58721 -12.21747 -12.09899 -12.01069 -11.99491 -11.96212 -11.86195 -11.13249 -10.77713 -10.61175 -10.26635 -10.05702 -9.83181 -9.70945 -8.60361 -6.31317 -0.48867 0.13890 0.62968 1.47324 1.53103 1.58598 1.70417 1.74294 2.48646 2.61238 3.14877 3.20476 3.39541 3.86580 4.01406 4.19760 4.22709 4.32578 4.39068 4.43293 4.45255 4.74109 4.78943 4.81978 4.88899 4.94660 5.01482 5.02644 5.13965 5.15500 5.33146 5.36880 5.40169 5.57365 5.99335 6.16609 6.40907 6.59823 6.65769 7.28875 7.49171 8.76214 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.013936 B = 0.009034 C = 0.007312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.708132 B = 3098.539501 C = 3828.215807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.104 4.104 3 C 0.205 3.795 4 H 0.017 0.983 5 C -0.592 4.592 6 H 0.032 0.968 7 C -0.009 4.009 8 N -0.923 5.923 9 Si 1.098 2.902 10 H -0.275 1.275 11 H -0.280 1.280 12 H -0.274 1.274 13 N -0.528 5.528 14 C 0.394 3.606 15 O -0.468 6.468 16 C -0.294 4.294 17 S 0.182 5.818 18 C 0.025 3.975 19 N -0.483 5.483 20 C 0.116 3.884 21 C -0.020 4.020 22 C -0.126 4.126 23 C -0.135 4.135 24 H 0.067 0.933 25 H 0.051 0.949 26 H 0.044 0.956 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.257 0.743 30 H 0.420 0.580 31 H 0.238 0.762 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.029 0.971 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.181 8.877 -1.973 13.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.143 4.143 3 C 0.097 3.903 4 H 0.035 0.965 5 C -0.630 4.630 6 H 0.050 0.950 7 C -0.209 4.209 8 N -0.559 5.559 9 Si 0.921 3.079 10 H -0.201 1.201 11 H -0.205 1.205 12 H -0.199 1.199 13 N -0.258 5.258 14 C 0.162 3.838 15 O -0.266 6.266 16 C -0.419 4.419 17 S 0.437 5.563 18 C -0.270 4.270 19 N -0.196 5.196 20 C -0.021 4.021 21 C -0.042 4.042 22 C -0.183 4.183 23 C -0.193 4.193 24 H 0.086 0.914 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.275 0.725 31 H 0.254 0.746 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.048 0.952 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.872 7.464 -1.387 11.677 hybrid contribution -0.875 0.863 -0.448 1.308 sum -9.747 8.327 -1.835 12.950 Atomic orbital electron populations 1.21783 0.95416 1.01870 1.00722 1.21552 0.95305 0.97842 0.99611 1.19390 0.95300 0.91012 0.84633 0.96517 1.21967 0.91498 1.55131 0.94450 0.94994 1.26822 1.09875 0.92672 0.91528 1.70922 1.06104 1.47966 1.30944 0.83178 0.70680 0.77760 0.76267 1.20055 1.20522 1.19898 1.71719 1.10782 1.09882 1.33393 1.20247 0.91030 0.91505 0.81020 1.84723 1.69997 1.45175 1.26681 1.25525 1.05797 1.05392 1.05181 1.83732 1.24759 1.33766 1.14043 1.29213 0.97607 0.94990 1.05234 1.65935 1.09386 1.30252 1.14048 1.20609 0.97417 0.93943 0.90131 1.19769 0.89600 0.97052 0.97733 1.21692 1.02417 0.91628 1.02564 1.21683 0.97324 1.01079 0.99189 0.91375 0.92982 0.93728 0.93867 0.94074 0.93311 0.72468 0.74572 0.91511 0.92057 0.90689 0.91591 0.92666 0.95203 0.90872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.32 9.81 71.98 0.71 -4.61 16 2 C -0.10 -4.95 5.59 30.59 0.17 -4.78 16 3 C 0.20 10.49 1.90 44.25 0.08 10.57 16 4 H 0.02 0.90 4.36 -2.39 -0.01 0.89 16 5 C -0.59 -34.06 8.64 25.60 0.22 -33.84 16 6 H 0.03 1.93 7.82 -2.91 -0.02 1.91 16 7 C -0.01 -0.50 5.24 84.65 0.44 -0.06 16 8 N -0.92 -54.44 13.62 21.45 0.29 -54.15 16 9 Si 1.10 51.18 29.91 68.60 2.05 53.23 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 13 N -0.53 -25.39 9.70 -438.99 -4.26 -29.64 16 14 C 0.39 15.48 6.95 87.23 0.61 16.09 16 15 O -0.47 -14.93 13.63 -86.08 -1.17 -16.10 16 16 C -0.29 -10.46 3.87 23.94 0.09 -10.37 16 17 S 0.18 5.18 21.84 -56.49 -1.23 3.95 16 18 C 0.03 0.68 12.22 130.61 1.60 2.28 16 19 N -0.48 -16.02 10.33 -190.52 -1.97 -17.99 16 20 C 0.12 4.11 5.37 42.02 0.23 4.34 16 21 C -0.02 -0.70 3.20 -11.54 -0.04 -0.73 16 22 C -0.13 -3.18 9.10 71.98 0.65 -2.52 16 23 C -0.13 -5.25 9.18 71.98 0.66 -4.59 16 24 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 25 H 0.05 1.88 7.07 -2.39 -0.02 1.87 16 26 H 0.04 1.67 7.78 -2.39 -0.02 1.65 16 27 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.04 2.07 8.14 -2.39 -0.02 2.06 16 29 H 0.26 15.29 6.66 -92.70 -0.62 14.67 16 30 H 0.42 8.28 8.81 -74.06 -0.65 7.63 16 31 H 0.24 4.16 8.06 -2.91 -0.02 4.13 16 32 H 0.07 2.47 7.10 -2.39 -0.02 2.46 16 33 H 0.06 1.59 8.09 -2.39 -0.02 1.57 16 34 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.03 1.45 7.93 -2.39 -0.02 1.43 16 38 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 Total: -1.00 -71.58 332.07 -0.30 -71.87 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 0.57 Total: 17.06 kcal Atomic # 6 Polarization: -33.65 SS G_CDS: 5.42 Total: -28.22 kcal Atomic # 7 Polarization: -95.85 SS G_CDS: -5.93 Total: -101.79 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -1.17 Total: -16.10 kcal Atomic # 14 Polarization: 51.18 SS G_CDS: 2.05 Total: 53.23 kcal Atomic # 16 Polarization: 5.18 SS G_CDS: -1.23 Total: 3.95 kcal Total: -71.58 -0.30 -71.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331351713.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.646 kcal (2) G-P(sol) polarization free energy of solvation -71.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds