Wall clock time and date at job start Tue Mar 31 2020 05:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38157 * 120.49752 * 2 1 4 4 N 1.31808 * 120.89507 * 179.97438 * 3 2 1 5 5 C 1.31837 * 122.05410 * 359.97438 * 4 3 2 6 6 C 1.38106 * 120.90382 * 0.02799 * 5 4 3 7 7 C 1.39828 * 120.50436 * 180.02562 * 2 1 3 8 8 C 1.48090 * 120.92355 * 0.03906 * 7 2 1 9 9 O 1.21524 * 120.00181 * 353.02355 * 8 7 2 10 10 N 1.34779 * 119.99847 * 173.01482 * 8 7 2 11 11 C 1.38993 * 119.99823 * 185.27385 * 10 8 7 12 12 C 1.38684 * 120.29185 * 330.12796 * 11 10 8 13 13 C 1.38204 * 120.03674 * 179.97438 * 12 11 10 14 14 C 1.38886 * 120.61435 * 0.02562 * 13 12 11 15 15 C 1.36450 * 120.58639 * 0.02562 * 14 13 12 16 16 C 1.40738 * 119.94941 * 359.65638 * 15 14 13 17 17 C 1.41048 * 120.30786 * 180.34141 * 16 15 14 18 18 H 1.08001 * 119.99593 * 148.47930 * 17 16 15 19 19 C 1.39968 * 119.99960 * 328.47651 * 17 16 15 20 20 N 1.30847 * 120.00104 * 166.50645 * 19 17 16 21 21 Si 1.86805 * 120.00037 * 346.50912 * 19 17 16 22 22 H 1.48509 * 109.46962 * 89.26451 * 21 19 17 23 23 H 1.48493 * 109.47008 * 209.26358 * 21 19 17 24 24 H 1.48496 * 109.47024 * 329.26812 * 21 19 17 25 25 H 1.08996 * 109.47120 * 263.54178 * 1 2 3 26 26 H 1.08998 * 109.47477 * 23.54696 * 1 2 3 27 27 H 1.09003 * 109.46662 * 143.54300 * 1 2 3 28 28 H 1.07999 * 119.55515 * 0.02562 * 3 2 1 29 29 H 1.08002 * 119.54702 * 180.02562 * 5 4 3 30 30 H 1.08001 * 120.50547 * 179.97438 * 6 5 4 31 31 H 0.97001 * 119.99848 * 5.28339 * 10 8 7 32 32 H 1.08004 * 119.98425 * 359.97438 * 12 11 10 33 33 H 1.07997 * 119.69203 * 179.97438 * 13 12 11 34 34 H 1.08003 * 119.70466 * 179.97438 * 14 13 12 35 35 H 1.08008 * 120.02447 * 179.97438 * 15 14 13 36 36 H 0.97001 * 120.00000 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2082 1.1904 0.0000 4 7 3.5262 1.1996 0.0005 5 6 4.2336 0.0871 0.0015 6 6 3.6143 -1.1473 0.0015 7 6 2.2168 -1.2047 -0.0005 8 6 1.5085 -2.5053 -0.0020 9 8 0.3004 -2.5394 0.1251 10 7 2.2038 -3.6511 -0.1444 11 6 1.5316 -4.8625 -0.2559 12 6 0.3014 -5.0392 0.3594 13 6 -0.3626 -6.2458 0.2447 14 6 0.1905 -7.2910 -0.4836 15 6 1.3999 -7.1452 -1.0984 16 6 2.0940 -5.9246 -1.0030 17 6 3.3413 -5.7632 -1.6415 18 1 3.6353 -4.7934 -2.0147 19 6 4.1979 -6.8600 -1.7912 20 7 5.2221 -6.7843 -2.6020 21 14 3.8790 -8.4318 -0.8335 22 1 2.9851 -9.3185 -1.6210 23 1 5.1666 -9.1265 -0.5795 24 1 3.2317 -8.1000 0.4610 25 1 -0.3633 -0.1156 1.0211 26 1 -0.3634 0.9421 -0.4105 27 1 -0.3633 -0.8266 -0.6107 28 1 1.6690 2.1262 0.0004 29 1 5.3123 0.1418 0.0023 30 1 4.2001 -2.0546 0.0020 31 1 3.1733 -3.6302 -0.1690 32 1 -0.1381 -4.2333 0.9286 33 1 -1.3202 -6.3774 0.7264 34 1 -0.3409 -8.2279 -0.5633 35 1 1.8219 -7.9642 -1.6621 36 1 5.8160 -7.5442 -2.7055 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334747124.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:58 Heat of formation + Delta-G solvation = 23.944081 kcal Electronic energy + Delta-G solvation = -21188.297743 eV Core-core repulsion = 18023.144652 eV Total energy + Delta-G solvation = -3165.153091 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.70723 -39.26935 -37.46840 -34.32892 -33.73377 -33.29328 -32.05182 -30.52214 -28.82370 -27.25805 -25.31702 -24.46035 -22.52732 -21.98195 -20.79909 -19.88068 -17.92797 -17.47345 -16.96499 -16.16705 -15.36304 -15.27699 -15.11514 -14.95595 -14.16070 -13.97360 -13.74932 -13.42470 -13.36736 -13.01404 -12.62971 -12.51156 -12.28873 -12.16212 -11.74118 -11.51012 -11.13255 -11.00593 -10.72971 -10.06699 -9.95547 -9.79214 -9.74774 -9.54290 -9.28866 -8.97181 -8.82025 -7.73003 -7.19759 -7.05176 -4.61529 0.76429 1.05741 2.38598 2.59337 3.03080 3.09498 3.23208 3.25306 3.58284 3.87343 3.90785 4.37425 4.42703 4.70118 4.83473 4.84681 5.01902 5.27717 5.38738 5.63513 5.67930 5.82315 5.84248 6.01430 6.07848 6.09403 6.26307 6.43249 6.57165 6.61591 6.65467 6.88355 7.09434 7.26214 7.40626 7.59216 7.73989 7.86254 7.91423 8.13080 8.17417 8.46793 8.61725 8.72536 9.96145 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.019716 B = 0.005463 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.834999 B = 5124.276556 C = 6341.618586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.080 4.080 3 C 0.088 3.912 4 N -0.471 5.471 5 C 0.085 3.915 6 C -0.136 4.136 7 C -0.084 4.084 8 C 0.540 3.460 9 O -0.524 6.524 10 N -0.625 5.625 11 C 0.024 3.976 12 C -0.080 4.080 13 C -0.226 4.226 14 C -0.087 4.087 15 C -0.226 4.226 16 C 0.084 3.916 17 C -0.455 4.455 18 H 0.090 0.910 19 C 0.085 3.915 20 N -0.809 5.809 21 Si 0.915 3.085 22 H -0.268 1.268 23 H -0.292 1.292 24 H -0.246 1.246 25 H 0.077 0.923 26 H 0.059 0.941 27 H 0.097 0.903 28 H 0.159 0.841 29 H 0.161 0.839 30 H 0.142 0.858 31 H 0.407 0.593 32 H 0.125 0.875 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.102 8.321 4.862 9.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.083 4.083 3 C -0.070 4.070 4 N -0.180 5.180 5 C -0.071 4.071 6 C -0.156 4.156 7 C -0.095 4.095 8 C 0.327 3.673 9 O -0.403 6.403 10 N -0.266 5.266 11 C -0.070 4.070 12 C -0.100 4.100 13 C -0.246 4.246 14 C -0.105 4.105 15 C -0.245 4.245 16 C 0.080 3.920 17 C -0.484 4.484 18 H 0.108 0.892 19 C -0.134 4.134 20 N -0.433 5.433 21 Si 0.742 3.258 22 H -0.195 1.195 23 H -0.220 1.220 24 H -0.169 1.169 25 H 0.095 0.905 26 H 0.078 0.922 27 H 0.116 0.884 28 H 0.176 0.824 29 H 0.178 0.822 30 H 0.160 0.840 31 H 0.244 0.756 32 H 0.142 0.858 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.124 0.876 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.219 9.044 4.788 10.471 hybrid contribution 0.226 -1.635 0.108 1.654 sum -1.992 7.409 4.896 9.101 Atomic orbital electron populations 1.20966 0.89111 1.03275 1.03823 1.21100 0.98413 0.92396 0.96346 1.22677 0.89800 0.97250 0.97228 1.67524 1.08304 1.31855 1.10344 1.22679 1.00500 0.87216 0.96729 1.22459 0.94081 1.00450 0.98655 1.20359 0.93768 0.94120 1.01301 1.18135 0.87027 0.83410 0.78695 1.90648 1.13573 1.86562 1.49531 1.42775 1.10422 1.04733 1.68705 1.17642 0.96970 0.87034 1.05337 1.20993 0.94080 0.96962 0.97952 1.20371 1.01280 0.94506 1.08425 1.20417 0.95502 0.97324 0.97304 1.20712 0.97119 0.98827 1.07871 1.17534 0.93844 0.90900 0.89719 1.19261 0.99448 0.97800 1.31853 0.89208 1.26131 0.93933 1.00186 0.93140 1.69657 1.12823 1.32978 1.27813 0.86293 0.76827 0.80345 0.82308 1.19464 1.21995 1.16900 0.90472 0.92163 0.88448 0.82376 0.82203 0.83990 0.75607 0.85752 0.88447 0.88723 0.87580 0.90300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 8.82 36.01 0.32 -1.14 16 2 C -0.08 -1.10 5.93 -104.06 -0.62 -1.72 16 3 C 0.09 1.09 10.83 -17.59 -0.19 0.90 16 4 N -0.47 -6.28 10.34 -13.31 -0.14 -6.42 16 5 C 0.08 1.05 11.17 -17.60 -0.20 0.85 16 6 C -0.14 -1.81 9.61 -39.02 -0.37 -2.19 16 7 C -0.08 -1.30 5.91 -104.65 -0.62 -1.92 16 8 C 0.54 9.94 7.59 -12.22 -0.09 9.84 16 9 O -0.52 -10.54 10.66 5.34 0.06 -10.48 16 10 N -0.62 -12.21 4.97 -10.26 -0.05 -12.26 16 11 C 0.02 0.55 6.42 -83.21 -0.53 0.01 16 12 C -0.08 -1.76 8.74 -39.43 -0.34 -2.10 16 13 C -0.23 -4.76 10.04 -39.35 -0.39 -5.15 16 14 C -0.09 -1.85 9.97 -39.99 -0.40 -2.25 16 15 C -0.23 -5.27 7.10 -39.28 -0.28 -5.54 16 16 C 0.08 2.03 5.12 -106.64 -0.55 1.49 16 17 C -0.45 -11.34 8.81 -37.87 -0.33 -11.67 16 18 H 0.09 2.31 7.64 -52.49 -0.40 1.90 16 19 C 0.09 2.09 5.46 -17.32 -0.09 2.00 16 20 N -0.81 -20.29 13.93 55.55 0.77 -19.51 16 21 Si 0.92 19.85 24.46 -169.99 -4.16 15.69 16 22 H -0.27 -5.70 6.48 56.52 0.37 -5.34 16 23 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.25 -5.47 6.92 56.52 0.39 -5.08 16 25 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.06 0.59 8.05 -51.93 -0.42 0.17 16 27 H 0.10 1.49 5.99 -51.93 -0.31 1.18 16 28 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 29 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 30 H 0.14 1.70 6.57 -52.49 -0.34 1.35 16 31 H 0.41 7.27 6.04 -40.82 -0.25 7.02 16 32 H 0.12 2.68 5.80 -52.48 -0.30 2.38 16 33 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 34 H 0.09 1.75 8.06 -52.48 -0.42 1.32 16 35 H 0.11 2.45 4.44 -52.48 -0.23 2.22 16 36 H 0.29 6.56 8.30 -40.82 -0.34 6.22 16 LS Contribution 299.60 15.07 4.51 4.51 Total: -1.00 -28.14 299.60 -7.25 -35.39 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -3.55 Total: 11.68 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -4.70 Total: -18.60 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: 0.59 Total: -38.20 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.06 Total: -10.48 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -4.16 Total: 15.69 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.14 -7.25 -35.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334747124.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.338 kcal (2) G-P(sol) polarization free energy of solvation -28.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds