Wall clock time and date at job start Tue Mar 31 2020 05:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35310 * 120.37446 * 2 1 4 4 N 1.35479 * 120.69240 * 180.02562 * 3 2 1 5 5 H 0.97006 * 119.26896 * 179.97438 * 4 3 2 6 6 C 1.35471 * 121.46456 * 359.97438 * 4 3 2 7 7 C 1.35317 * 120.69289 * 0.02562 * 6 4 3 8 8 C 1.41317 * 119.25031 * 0.23026 * 7 6 4 9 9 N 1.34376 * 120.67645 * 179.72422 * 8 7 6 10 10 C 1.33160 * 120.00119 * 355.60486 * 9 8 7 11 11 O 1.22033 * 119.99925 * 64.06666 * 10 9 8 12 12 C 1.47926 * 119.99792 * 244.07135 * 10 9 8 13 13 C 1.39933 * 119.88681 * 359.71932 * 12 10 9 14 14 C 1.36301 * 120.11737 * 179.75974 * 13 12 10 15 15 C 1.40907 * 119.88027 * 0.54272 * 14 13 12 16 16 C 1.41066 * 120.11416 * 179.69600 * 15 14 13 17 17 H 1.07999 * 120.00112 * 214.26560 * 16 15 14 18 18 C 1.40178 * 120.00034 * 34.26221 * 16 15 14 19 19 N 1.30677 * 120.00413 * 356.93773 * 18 16 15 20 20 Si 1.86803 * 119.99899 * 176.93549 * 18 16 15 21 21 H 1.48503 * 109.47006 * 60.00090 * 20 18 16 22 22 H 1.48500 * 109.47152 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47382 * 300.00161 * 20 18 16 24 24 C 1.40905 * 119.76999 * 359.71232 * 15 14 13 25 25 C 1.36296 * 119.88240 * 0.02562 * 24 15 14 26 26 H 1.08997 * 109.47194 * 90.00708 * 1 2 3 27 27 H 1.08999 * 109.47011 * 209.99904 * 1 2 3 28 28 H 1.08991 * 109.46945 * 329.99946 * 1 2 3 29 29 H 1.08004 * 119.65225 * 0.02562 * 3 2 1 30 30 H 1.07996 * 119.65634 * 179.97438 * 6 4 3 31 31 H 1.07997 * 120.37529 * 179.97438 * 7 6 4 32 32 H 1.07997 * 119.94084 * 0.02562 * 13 12 10 33 33 H 1.07999 * 120.06155 * 180.23160 * 14 13 12 34 34 H 0.96993 * 120.00297 * 179.97438 * 19 18 16 35 35 H 1.08003 * 120.06076 * 179.97438 * 24 15 14 36 36 H 1.08001 * 119.94589 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1912 1.1674 0.0000 4 7 3.5460 1.1749 -0.0005 5 1 4.0155 2.0237 -0.0009 6 6 4.2595 0.0233 -0.0005 7 6 3.6341 -1.1767 -0.0006 8 6 2.2216 -1.2193 -0.0055 9 7 1.5712 -2.3951 -0.0112 10 6 2.2553 -3.5340 -0.1006 11 8 3.0247 -3.8552 0.7905 12 6 2.0827 -4.4098 -1.2802 13 6 1.1955 -4.0420 -2.2979 14 6 1.0364 -4.8430 -3.3892 15 6 1.7588 -6.0489 -3.4860 16 6 1.5931 -6.8848 -4.6102 17 1 1.6500 -7.9575 -4.4986 18 6 1.3546 -6.3231 -5.8722 19 7 1.2261 -5.0288 -5.9977 20 14 1.2205 -7.4249 -7.3747 21 1 0.0988 -8.3803 -7.1894 22 1 0.9673 -6.5924 -8.5781 23 1 2.4881 -8.1781 -7.5510 24 6 2.6468 -6.4172 -2.4559 25 6 2.8026 -5.6064 -1.3715 26 1 -0.3633 -0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5138 29 1 1.6516 2.1030 0.0004 30 1 5.3387 0.0634 -0.0014 31 1 4.2080 -2.0916 -0.0010 32 1 0.6389 -3.1197 -2.2205 33 1 0.3542 -4.5564 -4.1758 34 1 1.0614 -4.6401 -6.8709 35 1 3.2026 -7.3407 -2.5251 36 1 3.4833 -5.8875 -0.5815 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336387409.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:49 Heat of formation + Delta-G solvation = 36.506000 kcal Electronic energy + Delta-G solvation = -20659.134603 eV Core-core repulsion = 17494.526237 eV Total energy + Delta-G solvation = -3164.608366 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.66646 -38.64353 -36.97846 -34.90631 -33.63759 -32.88079 -30.84496 -29.69850 -29.27940 -27.16277 -25.90936 -23.93287 -22.29812 -21.35911 -20.69034 -19.09540 -18.55456 -17.35285 -16.84248 -16.18874 -15.53912 -14.98133 -14.75428 -14.57445 -13.94222 -13.83466 -13.26494 -12.93963 -12.77486 -12.73818 -12.68217 -12.15359 -12.00754 -11.70331 -11.50178 -11.41491 -11.15119 -10.88399 -10.74419 -10.41298 -9.94112 -9.58866 -9.44468 -9.33036 -9.27701 -8.36360 -7.53224 -7.28414 -7.11615 -6.75103 -4.50360 1.12691 1.37960 2.28590 2.86343 3.00980 3.02791 3.05989 3.19116 3.55274 3.87050 3.96627 4.45715 4.61432 4.70349 5.01853 5.15442 5.22794 5.57869 5.69067 5.78686 5.83394 5.93921 6.16266 6.34761 6.41439 6.46859 6.58955 6.80556 6.86356 6.96550 7.00881 7.16798 7.22284 7.35600 7.65443 7.87881 8.02958 8.06847 8.23478 8.38729 8.59952 8.79635 8.91533 9.19779 10.13437 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.023176 B = 0.003987 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.831083 B = 7021.533225 C = 7490.267159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.157 4.157 3 C 0.106 3.894 4 N -0.595 5.595 5 H 0.416 0.584 6 C 0.120 3.880 7 C -0.241 4.241 8 C 0.293 3.707 9 N -0.604 5.604 10 C 0.542 3.458 11 O -0.563 6.563 12 C -0.267 4.267 13 C -0.048 4.048 14 C -0.175 4.175 15 C 0.127 3.873 16 C -0.452 4.452 17 H 0.080 0.920 18 C 0.070 3.930 19 N -0.794 5.794 20 Si 0.919 3.081 21 H -0.263 1.263 22 H -0.277 1.277 23 H -0.264 1.264 24 C -0.232 4.232 25 C -0.037 4.037 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.056 0.944 29 H 0.164 0.836 30 H 0.162 0.838 31 H 0.148 0.852 32 H 0.099 0.901 33 H 0.129 0.871 34 H 0.282 0.718 35 H 0.097 0.903 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.800 16.301 5.190 17.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.165 4.165 3 C -0.023 4.023 4 N -0.200 5.200 5 H 0.251 0.749 6 C -0.010 4.010 7 C -0.268 4.268 8 C 0.129 3.871 9 N -0.336 5.336 10 C 0.339 3.661 11 O -0.447 6.447 12 C -0.271 4.271 13 C -0.067 4.067 14 C -0.194 4.194 15 C 0.124 3.876 16 C -0.481 4.481 17 H 0.099 0.901 18 C -0.148 4.148 19 N -0.420 5.420 20 Si 0.744 3.256 21 H -0.188 1.188 22 H -0.202 1.202 23 H -0.189 1.189 24 C -0.251 4.251 25 C -0.056 4.056 26 H 0.086 0.914 27 H 0.099 0.901 28 H 0.075 0.925 29 H 0.182 0.818 30 H 0.179 0.821 31 H 0.165 0.835 32 H 0.117 0.883 33 H 0.147 0.853 34 H 0.093 0.907 35 H 0.116 0.884 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.299 15.744 5.489 16.831 hybrid contribution 0.923 -0.214 -0.834 1.262 sum 3.222 15.530 4.655 16.530 Atomic orbital electron populations 1.20400 0.89119 1.02637 1.02412 1.19338 0.97458 0.90080 1.09625 1.21497 0.82696 0.99595 0.98538 1.40843 1.05794 1.08978 1.64406 0.74897 1.21647 0.97458 0.85414 0.96441 1.21862 0.95927 0.98186 1.10857 1.18593 0.89421 0.91268 0.87790 1.68563 1.37136 0.98374 1.29541 1.19722 0.74851 0.86191 0.85359 1.90696 1.34984 1.78351 1.40646 1.19283 1.10292 0.99749 0.97785 1.20688 0.95293 0.97661 0.93014 1.21288 1.02948 0.97293 0.97864 1.17857 0.87012 0.91979 0.90713 1.19699 1.41679 0.94947 0.91776 0.90146 1.26023 0.92155 0.95447 1.01127 1.69709 1.34492 1.11568 1.26213 0.86183 0.79948 0.80257 0.79255 1.18771 1.20216 1.18874 1.20825 1.04477 1.01704 0.98092 1.20431 0.96355 0.92692 0.96133 0.91390 0.90110 0.92533 0.81832 0.82054 0.83488 0.88316 0.85301 0.90675 0.88444 0.88359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.04 9.81 36.01 0.35 -0.69 16 2 C -0.16 -2.03 5.89 -104.49 -0.62 -2.65 16 3 C 0.11 0.85 10.82 -16.99 -0.18 0.66 16 4 N -0.60 -3.89 5.24 -13.04 -0.07 -3.95 16 5 H 0.42 0.85 8.90 -40.82 -0.36 0.49 16 6 C 0.12 1.14 11.17 -16.99 -0.19 0.95 16 7 C -0.24 -3.79 9.04 -39.45 -0.36 -4.15 16 8 C 0.29 5.21 6.58 -84.41 -0.56 4.65 16 9 N -0.60 -13.37 8.67 -11.02 -0.10 -13.47 16 10 C 0.54 13.59 6.15 -13.01 -0.08 13.51 16 11 O -0.56 -14.93 15.76 4.89 0.08 -14.85 16 12 C -0.27 -6.98 5.90 -104.66 -0.62 -7.60 16 13 C -0.05 -1.23 9.51 -39.64 -0.38 -1.61 16 14 C -0.17 -4.73 8.61 -39.27 -0.34 -5.07 16 15 C 0.13 3.50 5.55 -106.81 -0.59 2.91 16 16 C -0.45 -12.02 9.03 -37.78 -0.34 -12.36 16 17 H 0.08 2.03 7.85 -52.49 -0.41 1.62 16 18 C 0.07 1.75 5.41 -17.32 -0.09 1.66 16 19 N -0.79 -20.40 10.60 55.56 0.59 -19.81 16 20 Si 0.92 18.53 29.56 -169.99 -5.03 13.51 16 21 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 22 H -0.28 -5.42 7.11 56.52 0.40 -5.01 16 23 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 24 C -0.23 -6.04 9.73 -39.27 -0.38 -6.42 16 25 C -0.04 -0.96 9.52 -39.64 -0.38 -1.33 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.08 1.17 7.58 -51.93 -0.39 0.77 16 28 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 29 H 0.16 0.60 8.06 -52.48 -0.42 0.18 16 30 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 31 H 0.15 2.73 6.34 -52.49 -0.33 2.39 16 32 H 0.10 2.41 7.53 -52.49 -0.39 2.01 16 33 H 0.13 3.54 6.13 -52.49 -0.32 3.22 16 34 H 0.28 6.57 8.29 -40.82 -0.34 6.23 16 35 H 0.10 2.35 8.06 -52.48 -0.42 1.93 16 36 H 0.10 2.43 7.63 -52.49 -0.40 2.03 16 LS Contribution 314.53 15.07 4.74 4.74 Total: -1.00 -35.89 314.53 -8.40 -44.29 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -3.86 Total: 7.08 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -4.75 Total: -17.54 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.42 Total: -37.23 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: 0.08 Total: -14.85 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -35.89 -8.40 -44.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336387409.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.792 kcal (2) G-P(sol) polarization free energy of solvation -35.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds