Wall clock time and date at job start Tue Mar 31 2020 06:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47293 * 2 1 4 4 N 1.46893 * 109.47275 * 120.00139 * 2 1 3 5 5 C 1.46907 * 110.99875 * 168.91845 * 4 2 1 6 6 C 1.50693 * 109.47622 * 293.95367 * 5 4 2 7 7 O 1.21298 * 119.99726 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00262 * 179.97438 * 6 5 4 9 9 C 1.37102 * 120.00179 * 180.02562 * 8 6 5 10 10 H 1.07999 * 119.99563 * 359.97438 * 9 8 6 11 11 C 1.38947 * 120.00042 * 180.02562 * 9 8 6 12 12 N 1.31407 * 120.00178 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99794 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47447 * 89.99777 * 13 11 9 15 15 H 1.48507 * 109.47061 * 209.99819 * 13 11 9 16 16 H 1.48505 * 109.46954 * 329.99194 * 13 11 9 17 17 C 1.46892 * 111.00534 * 292.87489 * 4 2 1 18 18 C 1.50696 * 109.47775 * 160.10918 * 17 4 2 19 19 C 1.33384 * 125.20500 * 95.34963 * 18 17 4 20 20 C 1.38426 * 114.92491 * 179.97438 * 19 18 17 21 21 C 1.33387 * 114.91808 * 0.02562 * 20 19 18 22 22 S 1.75889 * 109.59672 * 359.75507 * 21 20 19 23 23 H 1.09000 * 109.47176 * 300.49207 * 1 2 3 24 24 H 1.09000 * 109.47152 * 60.48685 * 1 2 3 25 25 H 1.08997 * 109.47553 * 180.48795 * 1 2 3 26 26 H 1.09001 * 109.47062 * 240.00492 * 2 1 3 27 27 H 1.08999 * 109.47038 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47361 * 300.00293 * 3 2 1 29 29 H 1.09000 * 109.47128 * 59.99987 * 3 2 1 30 30 H 1.09001 * 109.46850 * 53.96032 * 5 4 2 31 31 H 1.09007 * 109.46927 * 173.95424 * 5 4 2 32 32 H 0.96998 * 119.99817 * 0.02562 * 8 6 5 33 33 H 0.97003 * 120.00186 * 180.02562 * 12 11 9 34 34 H 1.09004 * 109.47433 * 280.11500 * 17 4 2 35 35 H 1.09010 * 109.46847 * 40.10546 * 17 4 2 36 36 H 1.08003 * 122.54025 * 359.95953 * 19 18 17 37 37 H 1.07997 * 122.54169 * 180.02562 * 20 19 18 38 38 H 1.08002 * 125.20516 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1993 5 6 3.4640 -0.9446 1.1088 6 6 3.7345 -1.9226 -0.0053 7 8 2.8145 -2.3657 -0.6600 8 7 4.9986 -2.3041 -0.2750 9 6 5.2447 -3.1935 -1.2890 10 1 4.4255 -3.5886 -1.8713 11 6 6.5480 -3.5873 -1.5667 12 7 7.5447 -3.1069 -0.8579 13 14 6.8833 -4.7985 -2.9487 14 1 7.1015 -4.0557 -4.2159 15 1 8.0950 -5.5942 -2.6264 16 1 5.7199 -5.7086 -3.1024 17 6 1.6926 0.0646 2.4149 18 6 1.7521 -0.8524 3.6093 19 6 2.8068 -1.0022 4.4119 20 6 2.6282 -1.9027 5.4480 21 6 1.4286 -2.4846 5.4863 22 16 0.4390 -1.8839 4.1620 23 1 -0.3633 0.5215 0.8855 24 1 -0.3633 0.5063 -0.8943 25 1 -0.3634 -1.0276 0.0088 26 1 1.8932 -0.5138 -0.8900 27 1 3.1300 1.4424 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.9841 -0.0086 0.9050 31 1 3.8201 -1.3602 2.0515 32 1 5.7344 -1.9495 0.2482 33 1 8.4546 -3.3815 -1.0520 34 1 2.4106 0.8747 2.5427 35 1 0.6886 0.4798 2.3252 36 1 3.7303 -0.4620 4.2646 37 1 3.4015 -2.1178 6.1705 38 1 1.1116 -3.2100 6.2209 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343041590.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:02 Heat of formation + Delta-G solvation = 4.118533 kcal Electronic energy + Delta-G solvation = -20189.813222 eV Core-core repulsion = 17159.244382 eV Total energy + Delta-G solvation = -3030.568840 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.24297 -37.70438 -36.80779 -33.83473 -32.18736 -31.18208 -30.06789 -27.35926 -26.83182 -25.24195 -23.82829 -22.71780 -20.05387 -19.05254 -18.89313 -17.80771 -17.04583 -15.96798 -15.57861 -15.17900 -15.07700 -14.50923 -14.02315 -13.67448 -13.59549 -13.22441 -12.89401 -12.69637 -12.57897 -12.20411 -12.09698 -12.01837 -11.67345 -11.51537 -11.39070 -11.09040 -10.97027 -10.77061 -10.58709 -10.39825 -10.30725 -10.18401 -9.42128 -8.57565 -8.38814 -8.27449 -7.93227 -7.80073 -6.38096 -3.78544 1.11996 1.79625 2.17660 2.85000 3.19934 3.28315 3.34514 3.95734 4.08673 4.29069 4.86127 5.10878 5.11867 5.15927 5.26359 5.32684 5.36836 5.53111 5.62971 5.67301 5.68440 5.75423 5.83492 5.94131 6.01021 6.07292 6.20602 6.24164 6.32914 6.38902 6.53564 6.58511 6.63840 7.35735 7.45375 7.58610 8.10582 8.66235 9.22177 9.59109 10.11232 10.79829 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.017165 B = 0.004842 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.795995 B = 5781.694867 C = 6686.017871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.071 3.929 3 C -0.187 4.187 4 N -0.502 5.502 5 C 0.042 3.958 6 C 0.447 3.553 7 O -0.576 6.576 8 N -0.566 5.566 9 C -0.297 4.297 10 H 0.103 0.897 11 C 0.022 3.978 12 N -0.903 5.903 13 Si 0.929 3.071 14 H -0.279 1.279 15 H -0.284 1.284 16 H -0.270 1.270 17 C 0.117 3.883 18 C -0.152 4.152 19 C -0.146 4.146 20 C -0.131 4.131 21 C -0.226 4.226 22 S 0.114 5.886 23 H 0.045 0.955 24 H 0.054 0.946 25 H 0.065 0.935 26 H 0.112 0.888 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.088 0.912 32 H 0.391 0.609 33 H 0.271 0.729 34 H 0.054 0.946 35 H 0.087 0.913 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.901 7.957 10.683 16.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.037 4.037 3 C -0.246 4.246 4 N -0.226 5.226 5 C -0.089 4.089 6 C 0.232 3.768 7 O -0.460 6.460 8 N -0.202 5.202 9 C -0.426 4.426 10 H 0.120 0.880 11 C -0.180 4.180 12 N -0.545 5.545 13 Si 0.756 3.244 14 H -0.205 1.205 15 H -0.210 1.210 16 H -0.194 1.194 17 C -0.013 4.013 18 C -0.270 4.270 19 C -0.177 4.177 20 C -0.162 4.162 21 C -0.362 4.362 22 S 0.377 5.623 23 H 0.064 0.936 24 H 0.073 0.927 25 H 0.084 0.916 26 H 0.130 0.870 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.107 0.893 32 H 0.224 0.776 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -12.043 6.865 9.754 16.950 hybrid contribution 2.775 0.544 0.229 2.837 sum -9.267 7.409 9.983 15.506 Atomic orbital electron populations 1.21789 0.94863 1.02397 1.00415 1.21921 0.95407 0.91528 0.94871 1.22541 1.01647 0.98667 1.01753 1.61771 1.13933 1.46224 1.00631 1.21917 0.88492 0.98467 1.00071 1.19717 0.83750 0.86215 0.87097 1.90488 1.43502 1.59037 1.52976 1.41860 1.06108 1.40523 1.31746 1.19687 0.93444 1.19645 1.09850 0.87966 1.25237 0.95142 0.98711 0.98865 1.69612 0.99747 1.44659 1.40440 0.85878 0.77950 0.80064 0.80519 1.20473 1.20970 1.19431 1.20603 1.01847 0.92097 0.86718 1.24443 0.97444 1.03801 1.01337 1.20123 0.99317 1.01778 0.96453 1.20102 0.97482 0.98493 1.00122 1.25589 0.98880 1.07651 1.04060 1.84205 1.16639 1.38636 1.22811 0.93596 0.92656 0.91615 0.86989 0.92585 0.92191 0.92987 0.93302 0.89348 0.77580 0.91953 0.92845 0.89502 0.84626 0.84656 0.82328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.17 37.15 0.34 -1.53 16 2 C 0.07 1.12 2.54 -67.72 -0.17 0.95 16 3 C -0.19 -2.46 8.52 37.16 0.32 -2.15 16 4 N -0.50 -8.35 4.10 -229.53 -0.94 -9.30 16 5 C 0.04 0.76 5.16 -4.98 -0.03 0.74 16 6 C 0.45 10.64 7.40 -10.99 -0.08 10.56 16 7 O -0.58 -15.51 13.98 5.54 0.08 -15.43 16 8 N -0.57 -14.48 5.29 -10.97 -0.06 -14.54 16 9 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 10 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 11 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 12 N -0.90 -24.78 13.05 55.50 0.72 -24.05 16 13 Si 0.93 21.26 29.55 -169.99 -5.02 16.23 16 14 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 15 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 17 C 0.12 1.56 4.05 -4.98 -0.02 1.54 16 18 C -0.15 -2.08 5.60 -36.01 -0.20 -2.29 16 19 C -0.15 -1.90 9.00 -41.21 -0.37 -2.27 16 20 C -0.13 -1.59 10.18 -41.21 -0.42 -2.01 16 21 C -0.23 -2.68 11.23 29.04 0.33 -2.36 16 22 S 0.11 1.47 23.33 -107.50 -2.51 -1.03 16 23 H 0.05 0.54 6.31 -51.93 -0.33 0.21 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.11 2.23 5.78 -51.93 -0.30 1.93 16 27 H 0.06 0.78 6.62 -51.93 -0.34 0.44 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.59 6.73 -51.93 -0.35 0.24 16 30 H 0.05 0.82 6.46 -51.93 -0.34 0.48 16 31 H 0.09 1.56 6.61 -51.93 -0.34 1.21 16 32 H 0.39 9.64 7.90 -40.82 -0.32 9.32 16 33 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 34 H 0.05 0.65 7.33 -51.93 -0.38 0.27 16 35 H 0.09 1.06 5.90 -51.92 -0.31 0.75 16 36 H 0.14 1.60 8.06 -52.48 -0.42 1.18 16 37 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 38 H 0.16 1.50 8.06 -52.49 -0.42 1.07 16 LS Contribution 322.35 15.07 4.86 4.86 Total: -1.00 -30.73 322.35 -8.48 -39.20 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -5.06 Total: 10.86 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -0.55 Total: -6.80 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: -0.28 Total: -47.89 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: 0.08 Total: -15.43 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -2.51 Total: -1.03 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.73 -8.48 -39.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343041590.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.320 kcal (2) G-P(sol) polarization free energy of solvation -30.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds