Wall clock time and date at job start Tue Mar 31 2020 06:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47293 * 2 1 4 4 N 1.46893 * 109.47275 * 120.00139 * 2 1 3 5 5 C 1.46907 * 110.99875 * 168.91845 * 4 2 1 6 6 C 1.50693 * 109.47622 * 293.95367 * 5 4 2 7 7 O 1.21298 * 119.99726 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00262 * 179.97438 * 6 5 4 9 9 C 1.37102 * 120.00179 * 180.02562 * 8 6 5 10 10 H 1.07999 * 119.99563 * 359.97438 * 9 8 6 11 11 C 1.38947 * 120.00042 * 180.02562 * 9 8 6 12 12 N 1.31407 * 120.00178 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99794 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47447 * 89.99777 * 13 11 9 15 15 H 1.48507 * 109.47061 * 209.99819 * 13 11 9 16 16 H 1.48505 * 109.46954 * 329.99194 * 13 11 9 17 17 C 1.46892 * 111.00534 * 292.87489 * 4 2 1 18 18 C 1.50696 * 109.47775 * 160.10918 * 17 4 2 19 19 C 1.33384 * 125.20500 * 95.34963 * 18 17 4 20 20 C 1.38426 * 114.92491 * 179.97438 * 19 18 17 21 21 C 1.33387 * 114.91808 * 0.02562 * 20 19 18 22 22 S 1.75889 * 109.59672 * 359.75507 * 21 20 19 23 23 H 1.09000 * 109.47176 * 300.49207 * 1 2 3 24 24 H 1.09000 * 109.47152 * 60.48685 * 1 2 3 25 25 H 1.08997 * 109.47553 * 180.48795 * 1 2 3 26 26 H 1.09001 * 109.47062 * 240.00492 * 2 1 3 27 27 H 1.08999 * 109.47038 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47361 * 300.00293 * 3 2 1 29 29 H 1.09000 * 109.47128 * 59.99987 * 3 2 1 30 30 H 1.09001 * 109.46850 * 53.96032 * 5 4 2 31 31 H 1.09007 * 109.46927 * 173.95424 * 5 4 2 32 32 H 0.96998 * 119.99817 * 0.02562 * 8 6 5 33 33 H 0.97003 * 120.00186 * 180.02562 * 12 11 9 34 34 H 1.09004 * 109.47433 * 280.11500 * 17 4 2 35 35 H 1.09010 * 109.46847 * 40.10546 * 17 4 2 36 36 H 1.08003 * 122.54025 * 359.95953 * 19 18 17 37 37 H 1.07997 * 122.54169 * 180.02562 * 20 19 18 38 38 H 1.08002 * 125.20516 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1993 5 6 3.4640 -0.9446 1.1088 6 6 3.7345 -1.9226 -0.0053 7 8 2.8145 -2.3657 -0.6600 8 7 4.9986 -2.3041 -0.2750 9 6 5.2447 -3.1935 -1.2890 10 1 4.4255 -3.5886 -1.8713 11 6 6.5480 -3.5873 -1.5667 12 7 7.5447 -3.1069 -0.8579 13 14 6.8833 -4.7985 -2.9487 14 1 7.1015 -4.0557 -4.2159 15 1 8.0950 -5.5942 -2.6264 16 1 5.7199 -5.7086 -3.1024 17 6 1.6926 0.0646 2.4149 18 6 1.7521 -0.8524 3.6093 19 6 2.8068 -1.0022 4.4119 20 6 2.6282 -1.9027 5.4480 21 6 1.4286 -2.4846 5.4863 22 16 0.4390 -1.8839 4.1620 23 1 -0.3633 0.5215 0.8855 24 1 -0.3633 0.5063 -0.8943 25 1 -0.3634 -1.0276 0.0088 26 1 1.8932 -0.5138 -0.8900 27 1 3.1300 1.4424 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.9841 -0.0086 0.9050 31 1 3.8201 -1.3602 2.0515 32 1 5.7344 -1.9495 0.2482 33 1 8.4546 -3.3815 -1.0520 34 1 2.4106 0.8747 2.5427 35 1 0.6886 0.4798 2.3252 36 1 3.7303 -0.4620 4.2646 37 1 3.4015 -2.1178 6.1705 38 1 1.1116 -3.2100 6.2209 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343041590.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:01 Heat of formation + Delta-G solvation = -15.962900 kcal Electronic energy + Delta-G solvation = -20190.684019 eV Core-core repulsion = 17159.244382 eV Total energy + Delta-G solvation = -3031.439636 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.73173 -39.11238 -38.05726 -35.87616 -33.45990 -33.08110 -31.32568 -28.63353 -27.98886 -26.81634 -25.33809 -23.74688 -21.57007 -20.52502 -20.02316 -19.75839 -18.14180 -17.70729 -16.73766 -16.61768 -16.38851 -16.16155 -15.67694 -15.27776 -15.03287 -14.49797 -14.09352 -13.88057 -13.66212 -13.60612 -13.39538 -13.09523 -13.07852 -13.03037 -12.85058 -12.54045 -12.40979 -12.14529 -12.07213 -11.99112 -11.68047 -11.56078 -11.33306 -10.22182 -9.97602 -9.56507 -9.28659 -9.11546 -8.45060 -5.93347 0.14719 0.83745 1.21966 1.37858 1.41176 1.53977 1.88558 2.08162 2.29683 2.86886 3.21862 3.39152 3.91663 4.02420 4.18441 4.25618 4.27549 4.31112 4.45515 4.49686 4.58836 4.59767 4.74194 4.76617 4.82295 4.86231 4.97610 5.14496 5.25042 5.31999 5.41824 5.43963 5.46625 5.65252 5.93338 6.14643 6.26383 6.62724 7.14981 7.58654 8.14939 8.72552 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.017165 B = 0.004842 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.795995 B = 5781.694867 C = 6686.017871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.068 3.932 3 C -0.178 4.178 4 N -0.520 5.520 5 C 0.058 3.942 6 C 0.444 3.556 7 O -0.611 6.611 8 N -0.576 5.576 9 C -0.330 4.330 10 H 0.078 0.922 11 C -0.013 4.013 12 N -0.922 5.922 13 Si 0.991 3.009 14 H -0.270 1.270 15 H -0.271 1.271 16 H -0.274 1.274 17 C 0.121 3.879 18 C -0.172 4.172 19 C -0.149 4.149 20 C -0.143 4.143 21 C -0.223 4.223 22 S 0.092 5.908 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.041 0.959 26 H 0.064 0.936 27 H 0.045 0.955 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.394 0.606 33 H 0.277 0.723 34 H 0.071 0.929 35 H 0.101 0.899 36 H 0.147 0.853 37 H 0.156 0.844 38 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.784 8.805 11.734 17.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.040 4.040 3 C -0.237 4.237 4 N -0.244 5.244 5 C -0.073 4.073 6 C 0.231 3.769 7 O -0.497 6.497 8 N -0.213 5.213 9 C -0.460 4.460 10 H 0.096 0.904 11 C -0.212 4.212 12 N -0.563 5.563 13 Si 0.815 3.185 14 H -0.196 1.196 15 H -0.196 1.196 16 H -0.199 1.199 17 C -0.007 4.007 18 C -0.290 4.290 19 C -0.181 4.181 20 C -0.173 4.173 21 C -0.358 4.358 22 S 0.356 5.644 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.061 0.939 26 H 0.083 0.917 27 H 0.064 0.936 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.116 0.884 32 H 0.228 0.772 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.119 0.881 36 H 0.165 0.835 37 H 0.174 0.826 38 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -11.925 7.736 10.825 17.867 hybrid contribution 2.691 0.274 -0.045 2.705 sum -9.234 8.010 10.780 16.298 Atomic orbital electron populations 1.21725 0.93201 1.01488 1.02298 1.21818 0.96724 0.92591 0.92854 1.22440 1.00905 0.96844 1.03499 1.61705 1.12511 1.48048 1.02168 1.21712 0.90334 0.97552 0.97737 1.20725 0.82622 0.85995 0.87510 1.90466 1.44430 1.60331 1.54478 1.41927 1.06947 1.40754 1.31713 1.19631 0.93480 1.21516 1.11325 0.90446 1.26001 0.94450 0.99921 1.00863 1.69673 1.00117 1.45202 1.41284 0.84955 0.77808 0.77882 0.77852 1.19570 1.19563 1.19922 1.20649 1.03019 0.92083 0.84960 1.24556 0.97928 1.04622 1.01923 1.20404 0.99516 1.01727 0.96417 1.20396 0.98165 0.98331 1.00449 1.25926 0.98507 1.07630 1.03754 1.84255 1.17282 1.39132 1.23767 0.91246 0.91173 0.93930 0.91748 0.93599 0.91155 0.90508 0.91334 0.88407 0.77210 0.91375 0.91082 0.88132 0.83519 0.82607 0.80061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.41 9.17 71.98 0.66 -2.75 16 2 C 0.07 2.14 2.54 44.91 0.11 2.25 16 3 C -0.18 -4.34 8.52 71.98 0.61 -3.72 16 4 N -0.52 -16.90 4.10 -880.09 -3.61 -20.51 16 5 C 0.06 2.08 5.16 85.55 0.44 2.52 16 6 C 0.44 21.67 7.40 87.66 0.65 22.32 16 7 O -0.61 -34.26 13.98 -3.08 -0.04 -34.30 16 8 N -0.58 -30.23 5.29 -306.99 -1.62 -31.85 16 9 C -0.33 -19.05 9.68 84.04 0.81 -18.23 16 10 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 11 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 12 N -0.92 -50.37 13.05 21.66 0.28 -50.09 16 13 Si 0.99 43.60 29.55 68.60 2.03 45.62 16 14 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 15 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 16 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 17 C 0.12 2.99 4.05 85.56 0.35 3.33 16 18 C -0.17 -4.43 5.60 24.59 0.14 -4.29 16 19 C -0.15 -3.60 9.00 21.22 0.19 -3.41 16 20 C -0.14 -3.17 10.18 21.22 0.22 -2.95 16 21 C -0.22 -4.86 11.23 66.72 0.75 -4.11 16 22 S 0.09 2.29 23.33 -56.49 -1.32 0.97 16 23 H 0.07 1.48 6.31 -2.39 -0.02 1.46 16 24 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.06 2.65 5.78 -2.39 -0.01 2.64 16 27 H 0.04 1.20 6.62 -2.39 -0.02 1.18 16 28 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 29 H 0.08 1.49 6.73 -2.39 -0.02 1.47 16 30 H 0.07 2.21 6.46 -2.39 -0.02 2.19 16 31 H 0.10 3.35 6.61 -2.38 -0.02 3.33 16 32 H 0.39 19.76 7.90 -92.71 -0.73 19.03 16 33 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 34 H 0.07 1.51 7.33 -2.38 -0.02 1.49 16 35 H 0.10 2.18 5.90 -2.38 -0.01 2.17 16 36 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 37 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 38 H 0.18 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -67.44 322.35 1.46 -65.98 By element: Atomic # 1 Polarization: 33.10 SS G_CDS: 0.35 Total: 33.45 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: 5.40 Total: -9.27 kcal Atomic # 7 Polarization: -97.50 SS G_CDS: -4.95 Total: -102.45 kcal Atomic # 8 Polarization: -34.26 SS G_CDS: -0.04 Total: -34.30 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -1.32 Total: 0.97 kcal Total: -67.44 1.46 -65.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343041590.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.015 kcal (2) G-P(sol) polarization free energy of solvation -67.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds