Wall clock time and date at job start Tue Mar 31 2020 05:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50702 * 109.47640 * 2 1 4 4 N 1.29422 * 124.80574 * 90.01849 * 3 2 1 5 5 C 1.30942 * 117.36469 * 179.97438 * 4 3 2 6 6 C 1.50704 * 122.90648 * 180.02562 * 5 4 3 7 7 C 1.35665 * 114.19042 * 0.02562 * 5 4 3 8 8 C 1.46684 * 126.12917 * 179.97438 * 7 5 4 9 9 O 1.21684 * 120.00112 * 7.01032 * 8 7 5 10 10 N 1.34773 * 119.99904 * 187.01519 * 8 7 5 11 11 C 1.46501 * 120.00120 * 5.75822 * 10 8 7 12 12 C 1.53003 * 109.46983 * 271.48061 * 11 10 8 13 13 C 1.46499 * 119.99943 * 185.75605 * 10 8 7 14 14 C 1.50696 * 109.47195 * 269.99910 * 13 10 8 15 15 H 1.07997 * 120.00495 * 0.02562 * 14 13 10 16 16 C 1.37882 * 120.00004 * 180.02562 * 14 13 10 17 17 N 1.31521 * 119.99743 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00192 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.46772 * 89.99738 * 18 16 14 20 20 H 1.48497 * 109.46975 * 209.99779 * 18 16 14 21 21 H 1.48497 * 109.46810 * 330.00230 * 18 16 14 22 22 S 1.70957 * 124.80087 * 270.29964 * 3 2 1 23 23 H 1.09006 * 109.46812 * 60.00002 * 1 2 3 24 24 H 1.08996 * 109.47791 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47134 * 300.00597 * 1 2 3 26 26 H 1.09000 * 109.47134 * 239.99403 * 2 1 3 27 27 H 1.09001 * 109.47163 * 119.99658 * 2 1 3 28 28 H 1.08993 * 109.47078 * 270.00633 * 6 5 4 29 29 H 1.09004 * 109.46934 * 29.99887 * 6 5 4 30 30 H 1.09001 * 109.46939 * 149.99882 * 6 5 4 31 31 H 1.09005 * 109.47149 * 31.47944 * 11 10 8 32 32 H 1.08993 * 109.47341 * 151.48158 * 11 10 8 33 33 H 1.08997 * 109.47329 * 299.99866 * 12 11 10 34 34 H 1.09007 * 109.46926 * 60.00160 * 12 11 10 35 35 H 1.08995 * 109.47207 * 179.97438 * 12 11 10 36 36 H 1.09000 * 109.47075 * 30.00222 * 13 10 8 37 37 H 1.09007 * 109.47052 * 149.99661 * 13 10 8 38 38 H 0.97003 * 119.99466 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2790 2.1171 1.0627 5 6 2.7124 3.3411 0.8931 6 6 3.0386 4.2606 2.0417 7 6 2.8423 3.7098 -0.4060 8 6 3.3034 5.0145 -0.8927 9 8 3.7321 5.8398 -0.1080 10 7 3.2523 5.2990 -2.2091 11 6 2.6213 4.3582 -3.1380 12 6 3.6614 3.3472 -3.6249 13 6 3.8278 6.5493 -2.7111 14 6 2.7764 7.6287 -2.6941 15 1 1.7793 7.4060 -2.3440 16 6 3.0873 8.9008 -3.1256 17 7 4.3017 9.1722 -3.5515 18 14 1.7842 10.2391 -3.1038 19 1 1.8188 10.9423 -1.7964 20 1 2.0532 11.2096 -4.1952 21 1 0.4450 9.6291 -3.3026 22 16 2.3508 2.3431 -1.4038 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.1486 4.8252 2.3191 29 1 3.3755 3.6712 2.8945 30 1 3.8278 4.9502 1.7421 31 1 1.8135 3.8320 -2.6293 32 1 2.2186 4.9045 -3.9908 33 1 4.4691 3.8734 -4.1336 34 1 4.0641 2.8008 -2.7720 35 1 3.1918 2.6470 -4.3157 36 1 4.6630 6.8454 -2.0764 37 1 4.1814 6.4024 -3.7317 38 1 4.5205 10.0673 -3.8547 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343888114.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:30 Heat of formation + Delta-G solvation = 2.357746 kcal Electronic energy + Delta-G solvation = -20288.077188 eV Core-core repulsion = 17257.431994 eV Total energy + Delta-G solvation = -3030.645194 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.01913 -38.78156 -35.49294 -34.30163 -32.87509 -30.80016 -30.21552 -28.66015 -26.61216 -25.42054 -23.24467 -23.11918 -21.86940 -20.36514 -18.06342 -17.95916 -16.51441 -16.25535 -15.63863 -15.12753 -14.77976 -14.38241 -14.21222 -13.97298 -13.87711 -13.40254 -13.07561 -12.82031 -12.34441 -12.23432 -12.12437 -11.96538 -11.85416 -11.69510 -11.35744 -11.28580 -11.15170 -11.04178 -10.87888 -10.63238 -10.16686 -9.70044 -9.41475 -9.09132 -8.97268 -8.46901 -8.43635 -7.75994 -6.07542 -4.12243 0.50391 1.42095 1.81966 2.73292 3.30208 3.36372 3.38407 3.71451 3.81794 4.07674 4.42922 4.77843 4.95807 4.99405 5.01717 5.16333 5.27528 5.35780 5.42448 5.43849 5.57233 5.63427 5.71605 5.89659 5.92351 5.94967 6.07431 6.09263 6.11726 6.37754 6.63470 6.96726 7.35236 7.43859 7.84756 7.88491 8.17919 8.26418 8.81663 8.96797 9.52852 11.00573 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.024332 B = 0.004876 C = 0.004591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.483357 B = 5740.502683 C = 6097.235860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.046 4.046 3 C 0.009 3.991 4 N -0.482 5.482 5 C 0.135 3.865 6 C -0.089 4.089 7 C -0.288 4.288 8 C 0.582 3.418 9 O -0.519 6.519 10 N -0.590 5.590 11 C 0.095 3.905 12 C -0.178 4.178 13 C 0.249 3.751 14 C -0.527 4.527 15 H 0.058 0.942 16 C 0.062 3.938 17 N -0.895 5.895 18 Si 0.898 3.102 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.274 1.274 22 S 0.197 5.803 23 H 0.058 0.942 24 H 0.066 0.934 25 H 0.061 0.939 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.104 0.896 31 H 0.068 0.932 32 H 0.097 0.903 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.045 0.955 37 H 0.036 0.964 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.083 -18.499 2.228 19.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.087 4.087 3 C -0.265 4.265 4 N -0.197 5.197 5 C -0.002 4.002 6 C -0.148 4.148 7 C -0.412 4.412 8 C 0.368 3.632 9 O -0.398 6.398 10 N -0.321 5.321 11 C -0.031 4.031 12 C -0.237 4.237 13 C 0.131 3.869 14 C -0.566 4.566 15 H 0.076 0.924 16 C -0.140 4.140 17 N -0.533 5.533 18 Si 0.726 3.274 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.199 1.199 22 S 0.457 5.543 23 H 0.077 0.923 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.102 0.898 27 H 0.108 0.892 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.123 0.877 31 H 0.086 0.914 32 H 0.115 0.885 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.063 0.937 37 H 0.054 0.946 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.906 -18.381 1.961 19.126 hybrid contribution -0.575 1.269 0.607 1.520 sum -5.481 -17.112 2.568 18.151 Atomic orbital electron populations 1.21765 0.93621 1.02341 1.02786 1.20187 0.96605 0.87957 1.03939 1.27884 1.01687 1.02091 0.94844 1.66095 1.15499 1.05851 1.32265 1.20579 0.95226 0.90634 0.93757 1.20657 1.03778 0.97052 0.93326 1.25856 1.17383 1.00900 0.97042 1.16715 0.79512 0.83984 0.83018 1.90747 1.47311 1.47394 1.54305 1.48157 1.56726 1.22056 1.05143 1.21723 0.94847 0.91605 0.94946 1.22429 1.00639 0.99187 1.01467 1.19340 0.94565 0.78178 0.94833 1.21408 0.97405 0.94651 1.43092 0.92404 1.24922 0.95613 0.98377 0.95054 1.69932 1.18843 1.21334 1.43238 0.86490 0.81637 0.81485 0.77778 1.20487 1.21125 1.19935 1.84553 1.58200 1.03198 1.08386 0.92307 0.91528 0.91996 0.89791 0.89204 0.90565 0.91319 0.87742 0.91441 0.88490 0.91209 0.92197 0.91254 0.93685 0.94621 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.89 37.15 0.37 -0.81 16 2 C -0.05 -0.42 6.51 -27.89 -0.18 -0.60 16 3 C 0.01 0.12 6.64 -13.29 -0.09 0.03 16 4 N -0.48 -7.65 10.50 -7.70 -0.08 -7.73 16 5 C 0.14 2.35 6.79 -83.89 -0.57 1.78 16 6 C -0.09 -1.45 9.79 36.01 0.35 -1.10 16 7 C -0.29 -5.19 6.19 -37.09 -0.23 -5.42 16 8 C 0.58 12.74 7.60 -12.85 -0.10 12.65 16 9 O -0.52 -13.06 13.90 5.20 0.07 -12.99 16 10 N -0.59 -12.65 2.46 -176.60 -0.43 -13.09 16 11 C 0.09 1.55 5.62 -4.04 -0.02 1.53 16 12 C -0.18 -2.36 9.00 37.16 0.33 -2.03 16 13 C 0.25 6.43 5.11 -5.20 -0.03 6.40 16 14 C -0.53 -14.82 9.39 -34.44 -0.32 -15.14 16 15 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 16 C 0.06 1.77 5.46 -17.81 -0.10 1.67 16 17 N -0.89 -26.25 13.29 55.43 0.74 -25.52 16 18 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 S 0.20 2.61 15.45 -107.50 -1.66 0.95 16 23 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.10 1.91 5.87 -51.93 -0.30 1.60 16 31 H 0.07 1.01 4.68 -24.68 -0.12 0.90 16 32 H 0.10 1.59 8.06 -51.93 -0.42 1.17 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 0.80 5.88 -39.85 -0.23 0.57 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.05 1.30 7.51 -51.93 -0.39 0.91 16 37 H 0.04 0.92 8.07 -51.92 -0.42 0.50 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 323.92 15.07 4.88 4.88 Total: -1.00 -32.63 323.92 -7.32 -39.95 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -5.23 Total: -2.18 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -0.58 Total: -1.04 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: 0.22 Total: -46.33 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.07 Total: -12.99 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -1.66 Total: 0.95 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.63 -7.32 -39.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343888114.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.308 kcal (2) G-P(sol) polarization free energy of solvation -32.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds