Wall clock time and date at job start Tue Mar 31 2020 05:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50702 * 109.47640 * 2 1 4 4 N 1.29422 * 124.80574 * 90.01849 * 3 2 1 5 5 C 1.30942 * 117.36469 * 179.97438 * 4 3 2 6 6 C 1.50704 * 122.90648 * 180.02562 * 5 4 3 7 7 C 1.35665 * 114.19042 * 0.02562 * 5 4 3 8 8 C 1.46684 * 126.12917 * 179.97438 * 7 5 4 9 9 O 1.21684 * 120.00112 * 7.01032 * 8 7 5 10 10 N 1.34773 * 119.99904 * 187.01519 * 8 7 5 11 11 C 1.46501 * 120.00120 * 5.75822 * 10 8 7 12 12 C 1.53003 * 109.46983 * 271.48061 * 11 10 8 13 13 C 1.46499 * 119.99943 * 185.75605 * 10 8 7 14 14 C 1.50696 * 109.47195 * 269.99910 * 13 10 8 15 15 H 1.07997 * 120.00495 * 0.02562 * 14 13 10 16 16 C 1.37882 * 120.00004 * 180.02562 * 14 13 10 17 17 N 1.31521 * 119.99743 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00192 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.46772 * 89.99738 * 18 16 14 20 20 H 1.48497 * 109.46975 * 209.99779 * 18 16 14 21 21 H 1.48497 * 109.46810 * 330.00230 * 18 16 14 22 22 S 1.70957 * 124.80087 * 270.29964 * 3 2 1 23 23 H 1.09006 * 109.46812 * 60.00002 * 1 2 3 24 24 H 1.08996 * 109.47791 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47134 * 300.00597 * 1 2 3 26 26 H 1.09000 * 109.47134 * 239.99403 * 2 1 3 27 27 H 1.09001 * 109.47163 * 119.99658 * 2 1 3 28 28 H 1.08993 * 109.47078 * 270.00633 * 6 5 4 29 29 H 1.09004 * 109.46934 * 29.99887 * 6 5 4 30 30 H 1.09001 * 109.46939 * 149.99882 * 6 5 4 31 31 H 1.09005 * 109.47149 * 31.47944 * 11 10 8 32 32 H 1.08993 * 109.47341 * 151.48158 * 11 10 8 33 33 H 1.08997 * 109.47329 * 299.99866 * 12 11 10 34 34 H 1.09007 * 109.46926 * 60.00160 * 12 11 10 35 35 H 1.08995 * 109.47207 * 179.97438 * 12 11 10 36 36 H 1.09000 * 109.47075 * 30.00222 * 13 10 8 37 37 H 1.09007 * 109.47052 * 149.99661 * 13 10 8 38 38 H 0.97003 * 119.99466 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2790 2.1171 1.0627 5 6 2.7124 3.3411 0.8931 6 6 3.0386 4.2606 2.0417 7 6 2.8423 3.7098 -0.4060 8 6 3.3034 5.0145 -0.8927 9 8 3.7321 5.8398 -0.1080 10 7 3.2523 5.2990 -2.2091 11 6 2.6213 4.3582 -3.1380 12 6 3.6614 3.3472 -3.6249 13 6 3.8278 6.5493 -2.7111 14 6 2.7764 7.6287 -2.6941 15 1 1.7793 7.4060 -2.3440 16 6 3.0873 8.9008 -3.1256 17 7 4.3017 9.1722 -3.5515 18 14 1.7842 10.2391 -3.1038 19 1 1.8188 10.9423 -1.7964 20 1 2.0532 11.2096 -4.1952 21 1 0.4450 9.6291 -3.3026 22 16 2.3508 2.3431 -1.4038 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.1486 4.8252 2.3191 29 1 3.3755 3.6712 2.8945 30 1 3.8278 4.9502 1.7421 31 1 1.8135 3.8320 -2.6293 32 1 2.2186 4.9045 -3.9908 33 1 4.4691 3.8734 -4.1336 34 1 4.0641 2.8008 -2.7720 35 1 3.1918 2.6470 -4.3157 36 1 4.6630 6.8454 -2.0764 37 1 4.1814 6.4024 -3.7317 38 1 4.5205 10.0673 -3.8547 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343888114.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:29 Heat of formation + Delta-G solvation = -18.899863 kcal Electronic energy + Delta-G solvation = -20288.998987 eV Core-core repulsion = 17257.431994 eV Total energy + Delta-G solvation = -3031.566993 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.38051 -40.29358 -37.15086 -35.28668 -34.87776 -32.12021 -31.57725 -30.23905 -28.37718 -26.36218 -25.15401 -24.48939 -22.80229 -21.85942 -19.52935 -19.22502 -18.62316 -17.72174 -17.11093 -16.53190 -16.42346 -15.67739 -15.58672 -15.29367 -15.03165 -14.74589 -14.32757 -14.19461 -13.90791 -13.70219 -13.39593 -13.35926 -13.14130 -12.97815 -12.73297 -12.60036 -12.52225 -12.38148 -12.28465 -12.11605 -12.00911 -11.75376 -10.86902 -10.66738 -10.44996 -10.28056 -9.73653 -9.40863 -8.24292 -6.38592 -0.73245 0.23039 0.64780 1.35844 1.39074 1.44294 1.48842 2.11081 2.22667 2.39982 3.02492 3.05926 3.58079 3.85924 3.88834 4.08264 4.19772 4.26992 4.34395 4.43698 4.59531 4.66010 4.78138 4.83191 4.84941 4.90597 4.98135 5.02155 5.09727 5.15466 5.28530 5.31572 5.38033 5.51759 5.76702 6.02585 6.53022 6.68128 6.70307 7.18185 7.34755 8.82959 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.024332 B = 0.004876 C = 0.004591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.483357 B = 5740.502683 C = 6097.235860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.049 4.049 3 C 0.022 3.978 4 N -0.504 5.504 5 C 0.137 3.863 6 C -0.088 4.088 7 C -0.338 4.338 8 C 0.576 3.424 9 O -0.571 6.571 10 N -0.597 5.597 11 C 0.086 3.914 12 C -0.171 4.171 13 C 0.266 3.734 14 C -0.544 4.544 15 H 0.050 0.950 16 C 0.012 3.988 17 N -0.926 5.926 18 Si 0.965 3.035 19 H -0.281 1.281 20 H -0.272 1.272 21 H -0.264 1.264 22 S 0.268 5.732 23 H 0.060 0.940 24 H 0.093 0.907 25 H 0.044 0.956 26 H 0.116 0.884 27 H 0.098 0.902 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.113 0.887 36 H 0.001 0.999 37 H 0.033 0.967 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.033 -21.238 1.294 22.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.090 4.090 3 C -0.251 4.251 4 N -0.220 5.220 5 C -0.002 4.002 6 C -0.147 4.147 7 C -0.462 4.462 8 C 0.364 3.636 9 O -0.453 6.453 10 N -0.327 5.327 11 C -0.038 4.038 12 C -0.230 4.230 13 C 0.146 3.854 14 C -0.582 4.582 15 H 0.068 0.932 16 C -0.187 4.187 17 N -0.565 5.565 18 Si 0.790 3.210 19 H -0.208 1.208 20 H -0.197 1.197 21 H -0.188 1.188 22 S 0.529 5.471 23 H 0.079 0.921 24 H 0.112 0.888 25 H 0.063 0.937 26 H 0.134 0.866 27 H 0.116 0.884 28 H 0.096 0.904 29 H 0.107 0.893 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.114 0.886 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.131 0.869 36 H 0.019 0.981 37 H 0.051 0.949 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.875 -21.170 0.983 22.280 hybrid contribution 0.015 1.971 0.912 2.172 sum -6.860 -19.199 1.895 20.476 Atomic orbital electron populations 1.21782 0.92538 1.03958 1.02086 1.20508 0.97315 0.85213 1.05943 1.28774 0.98605 1.03428 0.94282 1.66204 1.17178 1.05293 1.33344 1.20736 0.94386 0.91354 0.93709 1.20584 1.02999 0.96981 0.94104 1.25480 1.20718 1.01229 0.98746 1.17229 0.78653 0.85158 0.82600 1.90702 1.49482 1.49576 1.55494 1.48131 1.56861 1.21631 1.06098 1.22057 0.96112 0.91502 0.94086 1.22399 0.99597 0.98839 1.02144 1.18802 0.93069 0.80023 0.93547 1.21645 0.97440 0.95867 1.43271 0.93212 1.25794 0.97794 1.00662 0.94445 1.70039 1.20627 1.22111 1.43731 0.85448 0.79241 0.78511 0.77814 1.20752 1.19706 1.18793 1.84013 1.56587 0.99909 1.06580 0.92062 0.88826 0.93683 0.86609 0.88405 0.90436 0.89254 0.90330 0.89710 0.88618 0.92442 0.92169 0.86880 0.98078 0.94938 0.92294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.89 71.98 0.71 -1.03 16 2 C -0.05 -0.68 6.51 29.85 0.19 -0.48 16 3 C 0.02 0.52 6.64 88.46 0.59 1.11 16 4 N -0.50 -15.21 10.50 -178.28 -1.87 -17.08 16 5 C 0.14 4.77 6.79 42.10 0.29 5.06 16 6 C -0.09 -2.97 9.79 71.24 0.70 -2.27 16 7 C -0.34 -12.24 6.19 23.88 0.15 -12.09 16 8 C 0.58 26.36 7.60 86.45 0.66 27.01 16 9 O -0.57 -30.82 13.90 -4.30 -0.06 -30.88 16 10 N -0.60 -26.49 2.46 -830.87 -2.04 -28.53 16 11 C 0.09 2.75 5.62 86.38 0.49 3.24 16 12 C -0.17 -4.17 9.00 71.98 0.65 -3.53 16 13 C 0.27 14.44 5.11 85.63 0.44 14.88 16 14 C -0.54 -31.61 9.39 25.60 0.24 -31.37 16 15 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 16 C 0.01 0.72 5.46 84.65 0.46 1.18 16 17 N -0.93 -55.67 13.29 21.45 0.28 -55.39 16 18 Si 0.97 45.12 29.54 68.60 2.03 47.15 16 19 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 21 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 22 S 0.27 6.38 15.45 -56.49 -0.87 5.51 16 23 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 24 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 29 H 0.09 2.54 8.14 -2.38 -0.02 2.52 16 30 H 0.08 3.09 5.87 -2.39 -0.01 3.08 16 31 H 0.09 2.38 4.68 -19.71 -0.09 2.29 16 32 H 0.10 3.07 8.06 -2.39 -0.02 3.05 16 33 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.06 1.47 5.88 -10.06 -0.06 1.42 16 35 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.00 0.07 7.51 -2.39 -0.02 0.05 16 37 H 0.03 1.75 8.07 -2.38 -0.02 1.73 16 38 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -74.99 323.92 3.95 -71.04 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: 0.93 Total: 6.49 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: 5.56 Total: 1.69 kcal Atomic # 7 Polarization: -97.37 SS G_CDS: -3.63 Total: -101.00 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -0.06 Total: -30.88 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Atomic # 16 Polarization: 6.38 SS G_CDS: -0.87 Total: 5.51 kcal Total: -74.99 3.95 -71.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343888114.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.142 kcal (2) G-P(sol) polarization free energy of solvation -74.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds