Wall clock time and date at job start Tue Mar 31 2020 05:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38422 * 122.53614 * 2 1 4 4 C 1.33390 * 114.91870 * 179.97438 * 3 2 1 5 5 S 1.75890 * 109.59395 * 359.97438 * 4 3 2 6 6 C 1.33383 * 122.53781 * 179.97438 * 2 1 3 7 7 C 1.50704 * 125.20741 * 0.06509 * 6 2 1 8 8 N 1.46497 * 109.47064 * 89.97826 * 7 6 2 9 9 C 1.46500 * 119.99782 * 269.99791 * 8 7 6 10 10 C 1.34779 * 120.00092 * 90.00484 * 8 7 6 11 11 O 1.21582 * 119.99629 * 359.97438 * 10 8 7 12 12 N 1.34778 * 119.99764 * 179.97438 * 10 8 7 13 13 C 1.46499 * 119.99550 * 180.02562 * 12 10 8 14 14 C 1.52998 * 109.47038 * 180.02562 * 13 12 10 15 15 C 1.50696 * 109.47118 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00449 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00103 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00227 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 119.99762 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47058 * 90.00422 * 19 17 15 21 21 H 1.48502 * 109.47290 * 209.99982 * 19 17 15 22 22 H 1.48497 * 109.47481 * 330.00148 * 19 17 15 23 23 H 1.08995 * 109.47031 * 270.02672 * 1 2 3 24 24 H 1.09001 * 109.46930 * 30.02429 * 1 2 3 25 25 H 1.08996 * 109.46768 * 150.02516 * 1 2 3 26 26 H 1.07999 * 122.54698 * 359.95314 * 3 2 1 27 27 H 1.07998 * 125.20728 * 180.02562 * 4 3 2 28 28 H 1.09001 * 109.46886 * 209.98166 * 7 6 2 29 29 H 1.08999 * 109.46454 * 329.97614 * 7 6 2 30 30 H 1.09005 * 109.46886 * 90.00479 * 9 8 7 31 31 H 1.08996 * 109.47143 * 209.99987 * 9 8 7 32 32 H 1.08996 * 109.47741 * 330.00652 * 9 8 7 33 33 H 0.96995 * 120.00176 * 359.97438 * 12 10 8 34 34 H 1.09007 * 109.47035 * 300.00160 * 13 12 10 35 35 H 1.08996 * 109.47635 * 59.99651 * 13 12 10 36 36 H 1.08998 * 109.47156 * 299.99664 * 14 13 12 37 37 H 1.08996 * 109.47165 * 59.99803 * 14 13 12 38 38 H 0.96999 * 120.00463 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2515 1.1670 0.0000 4 6 3.5737 0.9901 0.0005 5 16 3.9387 -0.7305 0.0018 6 6 2.2245 -1.1245 0.0005 7 6 1.6537 -2.5192 -0.0003 8 7 1.4696 -2.9708 -1.3817 9 6 0.2033 -2.7160 -2.0730 10 6 2.4652 -3.6206 -2.0167 11 8 3.5162 -3.8316 -1.4430 12 7 2.2955 -4.0364 -3.2874 13 6 3.3775 -4.7433 -3.9773 14 6 2.9298 -5.1009 -5.3960 15 6 4.0429 -5.8274 -6.1059 16 1 4.9766 -6.0150 -5.5964 17 6 3.8699 -6.2518 -7.4063 18 7 4.8415 -6.8854 -8.0260 19 14 2.2554 -5.9268 -8.2878 20 1 2.3277 -4.6186 -8.9868 21 1 2.0067 -7.0044 -9.2788 22 1 1.1481 -5.8989 -7.2987 23 1 -0.3633 0.0005 1.0276 24 1 -0.3633 0.8898 -0.5142 25 1 -0.3633 -0.8902 -0.5134 26 1 1.7965 2.1464 -0.0007 27 1 4.3078 1.7822 0.0010 28 1 2.3395 -3.1927 0.5138 29 1 0.6922 -2.5185 0.5130 30 1 0.2564 -1.7560 -2.5865 31 1 0.0207 -3.5073 -2.8000 32 1 -0.6093 -2.6951 -1.3468 33 1 1.4569 -3.8683 -3.7449 34 1 4.2578 -4.1021 -4.0252 35 1 3.6215 -5.6550 -3.4322 36 1 2.0494 -5.7418 -5.3484 37 1 2.6862 -4.1888 -5.9408 38 1 4.7197 -7.1843 -8.9407 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344000592.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:03 Heat of formation + Delta-G solvation = 3.214014 kcal Electronic energy + Delta-G solvation = -19647.250443 eV Core-core repulsion = 16616.642379 eV Total energy + Delta-G solvation = -3030.608063 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.02290 -38.43450 -35.62444 -34.89432 -32.83134 -31.47783 -30.14394 -29.24145 -26.60999 -25.58920 -24.14529 -22.57085 -20.82553 -19.88818 -18.60697 -17.55651 -17.42847 -16.90838 -16.14436 -15.62272 -15.07429 -14.42818 -14.14845 -13.96246 -13.87100 -13.62767 -13.49793 -12.96390 -12.87587 -12.64667 -12.53684 -12.48038 -12.08601 -11.82958 -11.49357 -11.40544 -11.18688 -10.61061 -10.37463 -10.23194 -9.96300 -9.76269 -9.31293 -8.89457 -8.69726 -8.60832 -8.33419 -8.33133 -6.09593 -4.09439 0.88949 1.65854 2.05845 2.49572 3.00298 3.25869 3.33237 3.34544 3.48888 4.24397 4.38767 4.71633 4.78135 4.90131 4.97512 5.15520 5.23322 5.24908 5.31429 5.37922 5.45028 5.52338 5.55034 5.74268 5.96167 6.07250 6.27084 6.28969 6.38667 6.48680 6.60538 6.83249 6.99224 7.25216 7.27092 7.69021 8.22594 8.46864 8.88692 8.95555 9.50574 11.03529 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.026019 B = 0.003626 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.898585 B = 7720.009275 C = 8069.623875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.102 4.102 3 C -0.137 4.137 4 C -0.225 4.225 5 S 0.143 5.857 6 C -0.200 4.200 7 C 0.206 3.794 8 N -0.633 5.633 9 C 0.079 3.921 10 C 0.701 3.299 11 O -0.586 6.586 12 N -0.741 5.741 13 C 0.148 3.852 14 C -0.021 4.021 15 C -0.521 4.521 16 H 0.076 0.924 17 C 0.069 3.931 18 N -0.899 5.899 19 Si 0.882 3.118 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.267 1.267 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.134 0.866 27 H 0.160 0.840 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.391 0.609 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.021 0.979 37 H 0.016 0.984 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.251 15.390 17.288 26.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.116 4.116 3 C -0.168 4.168 4 C -0.362 4.362 5 S 0.410 5.590 6 C -0.319 4.319 7 C 0.081 3.919 8 N -0.372 5.372 9 C -0.064 4.064 10 C 0.402 3.598 11 O -0.464 6.464 12 N -0.396 5.396 13 C 0.025 3.975 14 C -0.059 4.059 15 C -0.560 4.560 16 H 0.094 0.906 17 C -0.133 4.133 18 N -0.537 5.537 19 Si 0.709 3.291 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.191 1.191 23 H 0.086 0.914 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.152 0.848 27 H 0.178 0.822 28 H 0.112 0.888 29 H 0.110 0.890 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.226 0.774 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.039 0.961 37 H 0.035 0.965 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.009 14.242 17.502 24.685 hybrid contribution -2.412 1.262 -0.980 2.893 sum -12.421 15.504 16.523 25.839 Atomic orbital electron populations 1.20596 0.90125 1.02789 1.02087 1.18802 0.97149 0.91591 1.04030 1.19970 0.92908 0.99005 1.04942 1.25751 0.99858 1.00389 1.10156 1.84847 1.05285 0.98244 1.70632 1.24849 0.96507 0.99546 1.11029 1.19596 1.00988 0.88870 0.82470 1.47075 1.14888 1.60947 1.14246 1.21773 0.85553 1.01323 0.97772 1.15981 0.83370 0.78510 0.81950 1.90897 1.26265 1.62591 1.66635 1.45665 1.19703 1.61831 1.12358 1.21379 0.87860 0.95141 0.93124 1.19787 0.98136 0.96662 0.91308 1.20919 1.00584 1.36424 0.98045 0.90574 1.24996 0.96527 0.94506 0.97245 1.69902 1.32335 1.38936 1.12543 0.86753 0.84554 0.78103 0.79659 1.20247 1.21279 1.19128 0.91396 0.91616 0.91441 0.84789 0.82209 0.88793 0.88999 0.92753 0.91159 0.90923 0.77429 0.92162 0.92124 0.96095 0.96540 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.71 9.60 36.01 0.35 -0.36 16 2 C -0.10 -1.06 5.80 -106.25 -0.62 -1.67 16 3 C -0.14 -1.40 9.98 -41.21 -0.41 -1.81 16 4 C -0.23 -2.43 11.23 29.04 0.33 -2.10 16 5 S 0.14 1.88 23.33 -107.50 -2.51 -0.63 16 6 C -0.20 -2.40 6.09 -36.00 -0.22 -2.62 16 7 C 0.21 2.36 5.38 -5.19 -0.03 2.33 16 8 N -0.63 -8.14 2.86 -188.74 -0.54 -8.68 16 9 C 0.08 0.72 8.96 59.85 0.54 1.26 16 10 C 0.70 12.13 8.28 -86.91 -0.72 11.41 16 11 O -0.59 -12.20 15.92 5.29 0.08 -12.12 16 12 N -0.74 -12.83 5.42 -65.23 -0.35 -13.18 16 13 C 0.15 3.11 5.61 -4.04 -0.02 3.09 16 14 C -0.02 -0.49 4.16 -27.89 -0.12 -0.60 16 15 C -0.52 -14.74 9.66 -34.44 -0.33 -15.07 16 16 H 0.08 2.34 7.99 -52.48 -0.42 1.92 16 17 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 18 N -0.90 -27.50 13.96 55.43 0.77 -26.73 16 19 Si 0.88 21.12 27.47 -169.99 -4.67 16.45 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 23 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 24 H 0.06 0.43 8.13 -51.93 -0.42 0.00 16 25 H 0.07 0.45 4.84 -51.93 -0.25 0.20 16 26 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 27 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 28 H 0.09 1.22 7.42 -51.93 -0.39 0.84 16 29 H 0.09 0.76 7.07 -51.93 -0.37 0.39 16 30 H 0.05 0.48 8.13 -51.93 -0.42 0.06 16 31 H 0.07 0.62 6.36 -51.93 -0.33 0.29 16 32 H 0.07 0.46 6.99 -51.93 -0.36 0.10 16 33 H 0.39 5.72 6.20 -40.82 -0.25 5.47 16 34 H 0.06 1.35 8.14 -51.92 -0.42 0.93 16 35 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.02 0.47 7.20 -51.93 -0.37 0.10 16 37 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 38 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 326.67 15.07 4.92 4.92 Total: -1.00 -33.55 326.67 -8.91 -42.45 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -5.26 Total: 1.77 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -1.35 Total: -4.26 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: -0.12 Total: -48.59 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.08 Total: -12.12 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.67 Total: 16.45 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -2.51 Total: -0.63 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.55 -8.91 -42.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344000592.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.667 kcal (2) G-P(sol) polarization free energy of solvation -33.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds