Wall clock time and date at job start Tue Mar 31 2020 05:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38422 * 122.53614 * 2 1 4 4 C 1.33390 * 114.91870 * 179.97438 * 3 2 1 5 5 S 1.75890 * 109.59395 * 359.97438 * 4 3 2 6 6 C 1.33383 * 122.53781 * 179.97438 * 2 1 3 7 7 C 1.50704 * 125.20741 * 0.06509 * 6 2 1 8 8 N 1.46497 * 109.47064 * 89.97826 * 7 6 2 9 9 C 1.46500 * 119.99782 * 269.99791 * 8 7 6 10 10 C 1.34779 * 120.00092 * 90.00484 * 8 7 6 11 11 O 1.21582 * 119.99629 * 359.97438 * 10 8 7 12 12 N 1.34778 * 119.99764 * 179.97438 * 10 8 7 13 13 C 1.46499 * 119.99550 * 180.02562 * 12 10 8 14 14 C 1.52998 * 109.47038 * 180.02562 * 13 12 10 15 15 C 1.50696 * 109.47118 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00449 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00103 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00227 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 119.99762 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47058 * 90.00422 * 19 17 15 21 21 H 1.48502 * 109.47290 * 209.99982 * 19 17 15 22 22 H 1.48497 * 109.47481 * 330.00148 * 19 17 15 23 23 H 1.08995 * 109.47031 * 270.02672 * 1 2 3 24 24 H 1.09001 * 109.46930 * 30.02429 * 1 2 3 25 25 H 1.08996 * 109.46768 * 150.02516 * 1 2 3 26 26 H 1.07999 * 122.54698 * 359.95314 * 3 2 1 27 27 H 1.07998 * 125.20728 * 180.02562 * 4 3 2 28 28 H 1.09001 * 109.46886 * 209.98166 * 7 6 2 29 29 H 1.08999 * 109.46454 * 329.97614 * 7 6 2 30 30 H 1.09005 * 109.46886 * 90.00479 * 9 8 7 31 31 H 1.08996 * 109.47143 * 209.99987 * 9 8 7 32 32 H 1.08996 * 109.47741 * 330.00652 * 9 8 7 33 33 H 0.96995 * 120.00176 * 359.97438 * 12 10 8 34 34 H 1.09007 * 109.47035 * 300.00160 * 13 12 10 35 35 H 1.08996 * 109.47635 * 59.99651 * 13 12 10 36 36 H 1.08998 * 109.47156 * 299.99664 * 14 13 12 37 37 H 1.08996 * 109.47165 * 59.99803 * 14 13 12 38 38 H 0.96999 * 120.00463 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2515 1.1670 0.0000 4 6 3.5737 0.9901 0.0005 5 16 3.9387 -0.7305 0.0018 6 6 2.2245 -1.1245 0.0005 7 6 1.6537 -2.5192 -0.0003 8 7 1.4696 -2.9708 -1.3817 9 6 0.2033 -2.7160 -2.0730 10 6 2.4652 -3.6206 -2.0167 11 8 3.5162 -3.8316 -1.4430 12 7 2.2955 -4.0364 -3.2874 13 6 3.3775 -4.7433 -3.9773 14 6 2.9298 -5.1009 -5.3960 15 6 4.0429 -5.8274 -6.1059 16 1 4.9766 -6.0150 -5.5964 17 6 3.8699 -6.2518 -7.4063 18 7 4.8415 -6.8854 -8.0260 19 14 2.2554 -5.9268 -8.2878 20 1 2.3277 -4.6186 -8.9868 21 1 2.0067 -7.0044 -9.2788 22 1 1.1481 -5.8989 -7.2987 23 1 -0.3633 0.0005 1.0276 24 1 -0.3633 0.8898 -0.5142 25 1 -0.3633 -0.8902 -0.5134 26 1 1.7965 2.1464 -0.0007 27 1 4.3078 1.7822 0.0010 28 1 2.3395 -3.1927 0.5138 29 1 0.6922 -2.5185 0.5130 30 1 0.2564 -1.7560 -2.5865 31 1 0.0207 -3.5073 -2.8000 32 1 -0.6093 -2.6951 -1.3468 33 1 1.4569 -3.8683 -3.7449 34 1 4.2578 -4.1021 -4.0252 35 1 3.6215 -5.6550 -3.4322 36 1 2.0494 -5.7418 -5.3484 37 1 2.6862 -4.1888 -5.9408 38 1 4.7197 -7.1843 -8.9407 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344000592.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:03 Heat of formation + Delta-G solvation = -19.094051 kcal Electronic energy + Delta-G solvation = -19648.217793 eV Core-core repulsion = 16616.642379 eV Total energy + Delta-G solvation = -3031.575413 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.25669 -39.31839 -36.90383 -36.37968 -34.81067 -32.61562 -31.57712 -30.13794 -27.57705 -26.92218 -25.49666 -23.45353 -22.66161 -21.17747 -19.59572 -18.97746 -18.61553 -18.34592 -17.38312 -16.73932 -16.27386 -16.07426 -15.58484 -15.28054 -15.13948 -14.60858 -14.47182 -14.33958 -14.13070 -13.71706 -13.40521 -13.33247 -13.15535 -13.03327 -12.76635 -12.48618 -12.28534 -12.17262 -12.12825 -11.75468 -11.52800 -11.47637 -11.21868 -10.78640 -10.19145 -9.68860 -9.49510 -9.25483 -8.29661 -6.37211 0.03997 0.78267 1.21636 1.39154 1.42180 1.53471 1.59747 1.95554 2.15811 2.37396 3.05239 3.07696 3.88739 4.06288 4.09974 4.28350 4.34313 4.43885 4.50060 4.53394 4.60829 4.72408 4.74752 4.76280 4.88124 4.94075 5.12315 5.17339 5.20982 5.40759 5.44006 5.47899 5.53859 5.66921 5.71112 5.89953 6.23183 6.69733 6.99717 7.27226 7.57558 8.87314 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.026019 B = 0.003626 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.898585 B = 7720.009275 C = 8069.623875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.091 4.091 3 C -0.140 4.140 4 C -0.218 4.218 5 S 0.050 5.950 6 C -0.212 4.212 7 C 0.205 3.795 8 N -0.623 5.623 9 C 0.070 3.930 10 C 0.694 3.306 11 O -0.630 6.630 12 N -0.732 5.732 13 C 0.166 3.834 14 C -0.009 4.009 15 C -0.540 4.540 16 H 0.027 0.973 17 C 0.004 3.996 18 N -0.951 5.951 19 Si 0.960 3.040 20 H -0.265 1.265 21 H -0.286 1.286 22 H -0.235 1.235 23 H 0.085 0.915 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.163 0.837 27 H 0.178 0.822 28 H 0.068 0.932 29 H 0.133 0.867 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.408 0.592 34 H 0.036 0.964 35 H 0.041 0.959 36 H 0.038 0.962 37 H 0.033 0.967 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.917 17.573 17.417 29.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.104 4.104 3 C -0.170 4.170 4 C -0.354 4.354 5 S 0.316 5.684 6 C -0.331 4.331 7 C 0.081 3.919 8 N -0.360 5.360 9 C -0.072 4.072 10 C 0.395 3.605 11 O -0.511 6.511 12 N -0.389 5.389 13 C 0.041 3.959 14 C -0.047 4.047 15 C -0.578 4.578 16 H 0.046 0.954 17 C -0.193 4.193 18 N -0.591 5.591 19 Si 0.782 3.218 20 H -0.190 1.190 21 H -0.211 1.211 22 H -0.158 1.158 23 H 0.103 0.897 24 H 0.098 0.902 25 H 0.095 0.905 26 H 0.181 0.819 27 H 0.196 0.804 28 H 0.087 0.913 29 H 0.151 0.849 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.127 0.873 33 H 0.245 0.755 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.052 0.948 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.740 16.465 17.665 28.292 hybrid contribution -0.910 0.650 -0.929 1.453 sum -15.650 17.114 16.737 28.599 Atomic orbital electron populations 1.20718 0.87307 1.03988 1.03554 1.19253 0.98997 0.90800 1.01397 1.20394 0.92593 1.00312 1.03725 1.25958 1.00859 0.98636 1.09912 1.85190 1.08665 1.01728 1.72818 1.24846 0.94816 1.00292 1.13135 1.19756 1.02380 0.88112 0.81661 1.47113 1.14959 1.59342 1.14593 1.22109 0.84406 1.01842 0.98843 1.16197 0.83783 0.78762 0.81733 1.90874 1.28496 1.64215 1.67531 1.45280 1.19365 1.61716 1.12570 1.20847 0.88345 0.94227 0.92492 1.19620 0.96623 0.96819 0.91656 1.21243 1.00571 1.37291 0.98725 0.95448 1.26094 1.01224 0.93888 0.98091 1.70077 1.35333 1.40485 1.13215 0.85522 0.79453 0.78218 0.78581 1.19027 1.21149 1.15823 0.89659 0.90222 0.90471 0.81911 0.80415 0.91323 0.84899 0.91965 0.90667 0.87252 0.75459 0.94543 0.94099 0.94367 0.94824 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.94 9.60 71.24 0.68 -0.25 16 2 C -0.09 -1.60 5.80 -20.92 -0.12 -1.72 16 3 C -0.14 -2.45 9.98 21.22 0.21 -2.24 16 4 C -0.22 -4.47 11.23 66.72 0.75 -3.72 16 5 S 0.05 1.38 23.33 -56.49 -1.32 0.06 16 6 C -0.21 -4.83 6.09 24.59 0.15 -4.69 16 7 C 0.21 4.38 5.38 85.63 0.46 4.84 16 8 N -0.62 -14.79 2.86 -869.32 -2.48 -17.27 16 9 C 0.07 0.97 8.96 127.77 1.15 2.12 16 10 C 0.69 23.88 8.28 179.05 1.48 25.37 16 11 O -0.63 -27.37 15.92 -3.98 -0.06 -27.43 16 12 N -0.73 -24.69 5.42 -478.54 -2.59 -27.28 16 13 C 0.17 7.11 5.61 86.38 0.48 7.60 16 14 C -0.01 -0.43 4.16 29.85 0.12 -0.30 16 15 C -0.54 -31.38 9.66 25.60 0.25 -31.14 16 16 H 0.03 1.79 7.99 -2.91 -0.02 1.77 16 17 C 0.00 0.23 5.47 84.66 0.46 0.70 16 18 N -0.95 -59.88 13.96 21.45 0.30 -59.58 16 19 Si 0.96 42.43 27.47 68.60 1.88 44.32 16 20 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 21 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 22 H -0.24 -9.16 6.54 99.48 0.65 -8.51 16 23 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 24 H 0.08 0.61 8.13 -2.39 -0.02 0.59 16 25 H 0.08 0.61 4.84 -2.39 -0.01 0.60 16 26 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 27 H 0.18 2.82 8.06 -2.91 -0.02 2.80 16 28 H 0.07 1.82 7.42 -2.39 -0.02 1.81 16 29 H 0.13 1.69 7.07 -2.39 -0.02 1.67 16 30 H 0.06 0.82 8.13 -2.38 -0.02 0.80 16 31 H 0.07 1.00 6.36 -2.39 -0.02 0.99 16 32 H 0.11 0.76 6.99 -2.39 -0.02 0.75 16 33 H 0.41 10.82 6.20 -92.71 -0.58 10.25 16 34 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 35 H 0.04 1.89 8.14 -2.39 -0.02 1.88 16 36 H 0.04 1.62 7.20 -2.39 -0.02 1.60 16 37 H 0.03 1.43 7.57 -2.39 -0.02 1.41 16 38 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -77.76 326.67 2.24 -75.52 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 0.44 Total: 15.10 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: 6.08 Total: -3.44 kcal Atomic # 7 Polarization: -99.35 SS G_CDS: -4.78 Total: -104.13 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -0.06 Total: -27.43 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 1.88 Total: 44.32 kcal Atomic # 16 Polarization: 1.38 SS G_CDS: -1.32 Total: 0.06 kcal Total: -77.76 2.24 -75.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344000592.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.426 kcal (2) G-P(sol) polarization free energy of solvation -77.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds