Wall clock time and date at job start Tue Mar 31 2020 06:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.46899 * 2 1 4 4 N 1.46509 * 109.46836 * 180.02562 * 3 2 1 5 5 C 1.37096 * 120.00029 * 269.99898 * 4 3 2 6 6 H 1.07995 * 119.99930 * 146.02162 * 5 4 3 7 7 C 1.38952 * 120.00019 * 326.01791 * 5 4 3 8 8 N 1.31409 * 120.00265 * 337.10911 * 7 5 4 9 9 Si 1.86800 * 119.99817 * 157.10970 * 7 5 4 10 10 H 1.48490 * 109.47328 * 59.99861 * 9 7 5 11 11 H 1.48496 * 109.47026 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.46763 * 299.99742 * 9 7 5 13 13 C 1.34781 * 119.99705 * 90.00594 * 4 3 2 14 14 O 1.21294 * 119.99998 * 5.12202 * 13 4 3 15 15 C 1.50696 * 119.99583 * 184.85684 * 13 4 3 16 16 C 1.52998 * 109.46911 * 175.05013 * 15 13 4 17 17 C 1.50705 * 109.47059 * 179.97438 * 16 15 13 18 18 N 1.29026 * 124.91182 * 89.72469 * 17 16 15 19 19 C 1.31788 * 117.12343 * 179.81376 * 18 17 16 20 20 C 1.50696 * 122.74936 * 180.22320 * 19 18 17 21 21 C 1.33634 * 114.49956 * 0.47062 * 19 18 17 22 22 S 1.70973 * 124.92128 * 270.02523 * 17 16 15 23 23 H 1.08997 * 109.47217 * 299.99338 * 1 2 3 24 24 H 1.08997 * 109.47576 * 60.00272 * 1 2 3 25 25 H 1.09004 * 109.47224 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46603 * 240.00333 * 2 1 3 27 27 H 1.08995 * 109.47108 * 120.00325 * 2 1 3 28 28 H 1.08996 * 109.47543 * 60.00463 * 3 2 1 29 29 H 1.08995 * 109.47506 * 300.00081 * 3 2 1 30 30 H 0.97000 * 120.00588 * 184.94933 * 8 7 5 31 31 H 1.09002 * 109.47041 * 295.05122 * 15 13 4 32 32 H 1.08997 * 109.47450 * 55.05293 * 15 13 4 33 33 H 1.08997 * 109.47542 * 299.99464 * 16 15 13 34 34 H 1.09004 * 109.47210 * 59.99916 * 16 15 13 35 35 H 1.08999 * 109.47177 * 270.24161 * 20 19 18 36 36 H 1.09001 * 109.47413 * 30.24264 * 20 19 18 37 37 H 1.09003 * 109.47433 * 150.24125 * 20 19 18 38 38 H 1.07994 * 126.04011 * 179.79078 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1910 1.4423 1.1864 6 1 5.1327 0.9195 1.2657 7 6 3.6747 2.1147 2.2873 8 7 2.8141 3.0929 2.1156 9 14 4.2040 1.6283 4.0114 10 1 5.6732 1.7973 4.1444 11 1 3.5141 2.4918 5.0031 12 1 3.8447 0.2084 4.2573 13 6 4.1784 1.4427 -1.1682 14 8 3.5750 1.5368 -2.2162 15 6 5.6813 1.3322 -1.1711 16 6 6.1823 1.2320 -2.6133 17 6 7.6854 1.1221 -2.6163 18 7 8.3449 0.0142 -2.5662 19 6 9.6601 0.0967 -2.5813 20 6 10.5536 -1.1158 -2.5329 21 6 10.1365 1.3440 -2.6380 22 16 8.7635 2.4475 -2.6793 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8932 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9563 -0.8899 30 1 2.5085 3.6094 2.8776 31 1 6.1114 2.2147 -0.6975 32 1 5.9812 0.4412 -0.6196 33 1 5.7523 0.3495 -3.0869 34 1 5.8824 2.1230 -3.1649 35 1 10.7744 -1.3632 -1.4946 36 1 10.0497 -1.9577 -3.0077 37 1 11.4831 -0.9037 -3.0614 38 1 11.1789 1.6258 -2.6559 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345724830.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:06 Heat of formation + Delta-G solvation = -8.358761 kcal Electronic energy + Delta-G solvation = -19728.903219 eV Core-core repulsion = 16697.793323 eV Total energy + Delta-G solvation = -3031.109896 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.76727 -38.60820 -35.30275 -33.69219 -32.75526 -31.34511 -30.64855 -27.62140 -26.48711 -25.34013 -24.04832 -21.83910 -20.52388 -19.54356 -19.03957 -17.51905 -16.81596 -15.99510 -15.17739 -14.85018 -14.65102 -14.47818 -14.28625 -13.84849 -13.47902 -13.18043 -12.91187 -12.68306 -12.52921 -12.20665 -12.00447 -11.63798 -11.37983 -11.34946 -11.22778 -11.15714 -10.93648 -10.64489 -10.54035 -10.36161 -10.23200 -9.72894 -9.47467 -9.28314 -9.13316 -8.63765 -8.36096 -7.50515 -6.39275 -4.04632 0.82624 1.50234 1.88994 2.88549 3.10132 3.19162 3.21728 3.88353 4.08270 4.18451 4.74994 4.95299 5.10201 5.19894 5.30487 5.52125 5.58868 5.64918 5.68033 5.80322 5.83265 5.91039 6.02306 6.13862 6.31860 6.37120 6.50861 6.53372 6.59013 6.63732 6.71482 6.83626 7.14649 7.36225 7.53567 7.90223 7.93660 8.36670 9.05581 9.51190 9.94425 10.61912 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.016898 B = 0.004609 C = 0.004089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.592969 B = 6073.038080 C = 6845.579647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.133 4.133 3 C 0.109 3.891 4 N -0.436 5.436 5 C -0.343 4.343 6 H 0.090 0.910 7 C 0.046 3.954 8 N -0.858 5.858 9 Si 0.913 3.087 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.272 1.272 13 C 0.470 3.530 14 O -0.609 6.609 15 C -0.111 4.111 16 C -0.030 4.030 17 C 0.076 3.924 18 N -0.478 5.478 19 C 0.068 3.932 20 C -0.077 4.077 21 C -0.279 4.279 22 S 0.115 5.885 23 H 0.051 0.949 24 H 0.049 0.951 25 H 0.044 0.956 26 H 0.049 0.951 27 H 0.058 0.942 28 H 0.109 0.891 29 H 0.054 0.946 30 H 0.271 0.729 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.050 -3.113 -4.765 11.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.172 4.172 3 C -0.015 4.015 4 N -0.154 5.154 5 C -0.471 4.471 6 H 0.108 0.892 7 C -0.160 4.160 8 N -0.494 5.494 9 Si 0.739 3.261 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.197 1.197 13 C 0.259 3.741 14 O -0.496 6.496 15 C -0.152 4.152 16 C -0.071 4.071 17 C -0.202 4.202 18 N -0.193 5.193 19 C -0.064 4.064 20 C -0.137 4.137 21 C -0.418 4.418 22 S 0.370 5.630 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.127 0.873 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.115 0.885 34 H 0.109 0.891 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 9.166 -2.341 -5.144 10.768 hybrid contribution 0.952 -0.849 1.156 1.721 sum 10.118 -3.190 -3.988 11.334 Atomic orbital electron populations 1.21655 0.96600 1.00414 1.01400 1.21819 0.94677 0.99456 1.01208 1.21517 0.81421 0.94678 1.03882 1.43453 1.04828 1.62588 1.04482 1.19393 1.07146 1.33373 0.87206 0.89223 1.25303 0.96535 0.94058 1.00130 1.69836 1.31510 1.16137 1.31939 0.86226 0.78972 0.78954 0.81946 1.19755 1.20859 1.19742 1.20199 0.88832 0.80911 0.84194 1.90520 1.70426 1.56567 1.32043 1.21318 0.95149 1.04018 0.94726 1.20113 0.83068 1.05018 0.98893 1.27321 1.02049 0.90298 1.00521 1.66176 1.06658 1.29315 1.17114 1.20320 0.89699 0.95191 1.01215 1.20335 0.96742 0.93779 1.02811 1.26719 1.03528 0.95616 1.15924 1.84053 0.97558 1.13368 1.67988 0.92967 0.93150 0.93657 0.93175 0.92292 0.87320 0.92712 0.91837 0.89473 0.89796 0.88523 0.89057 0.90717 0.90656 0.91010 0.81040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.91 37.16 0.37 -2.07 16 2 C -0.13 -2.76 6.26 -26.74 -0.17 -2.93 16 3 C 0.11 2.61 5.05 -4.04 -0.02 2.59 16 4 N -0.44 -10.96 2.55 -114.81 -0.29 -11.25 16 5 C -0.34 -8.63 8.77 -14.93 -0.13 -8.76 16 6 H 0.09 2.16 6.86 -52.49 -0.36 1.80 16 7 C 0.05 1.14 4.96 -17.47 -0.09 1.06 16 8 N -0.86 -22.36 11.30 55.50 0.63 -21.73 16 9 Si 0.91 19.31 29.61 -169.99 -5.03 14.27 16 10 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 11 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 12 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 13 C 0.47 11.33 7.62 -10.99 -0.08 11.25 16 14 O -0.61 -15.78 15.54 5.55 0.09 -15.70 16 15 C -0.11 -2.21 4.34 -27.89 -0.12 -2.33 16 16 C -0.03 -0.52 5.10 -27.88 -0.14 -0.66 16 17 C 0.08 1.23 6.64 -13.45 -0.09 1.14 16 18 N -0.48 -7.90 10.53 -8.06 -0.08 -7.98 16 19 C 0.07 0.93 6.74 -84.23 -0.57 0.37 16 20 C -0.08 -0.78 10.31 36.00 0.37 -0.41 16 21 C -0.28 -3.42 11.13 29.12 0.32 -3.09 16 22 S 0.11 1.55 23.18 -107.50 -2.49 -0.94 16 23 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.11 2.76 5.32 -51.93 -0.28 2.49 16 29 H 0.05 1.36 7.36 -51.93 -0.38 0.98 16 30 H 0.27 6.68 8.32 -40.82 -0.34 6.34 16 31 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 32 H 0.08 1.67 7.55 -51.93 -0.39 1.28 16 33 H 0.10 1.76 8.14 -51.93 -0.42 1.33 16 34 H 0.09 1.57 8.04 -51.93 -0.42 1.15 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 38 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 333.74 15.07 5.03 5.03 Total: -1.00 -29.10 333.74 -8.12 -37.22 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -5.61 Total: 4.93 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -0.35 Total: -3.85 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: 0.25 Total: -40.97 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: 0.09 Total: -15.70 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.03 Total: 14.27 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -2.49 Total: -0.94 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.10 -8.12 -37.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345724830.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.863 kcal (2) G-P(sol) polarization free energy of solvation -29.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds