Wall clock time and date at job start Tue Mar 31 2020 06:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.46899 * 2 1 4 4 N 1.46509 * 109.46836 * 180.02562 * 3 2 1 5 5 C 1.37096 * 120.00029 * 269.99898 * 4 3 2 6 6 H 1.07995 * 119.99930 * 146.02162 * 5 4 3 7 7 C 1.38952 * 120.00019 * 326.01791 * 5 4 3 8 8 N 1.31409 * 120.00265 * 337.10911 * 7 5 4 9 9 Si 1.86800 * 119.99817 * 157.10970 * 7 5 4 10 10 H 1.48490 * 109.47328 * 59.99861 * 9 7 5 11 11 H 1.48496 * 109.47026 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.46763 * 299.99742 * 9 7 5 13 13 C 1.34781 * 119.99705 * 90.00594 * 4 3 2 14 14 O 1.21294 * 119.99998 * 5.12202 * 13 4 3 15 15 C 1.50696 * 119.99583 * 184.85684 * 13 4 3 16 16 C 1.52998 * 109.46911 * 175.05013 * 15 13 4 17 17 C 1.50705 * 109.47059 * 179.97438 * 16 15 13 18 18 N 1.29026 * 124.91182 * 89.72469 * 17 16 15 19 19 C 1.31788 * 117.12343 * 179.81376 * 18 17 16 20 20 C 1.50696 * 122.74936 * 180.22320 * 19 18 17 21 21 C 1.33634 * 114.49956 * 0.47062 * 19 18 17 22 22 S 1.70973 * 124.92128 * 270.02523 * 17 16 15 23 23 H 1.08997 * 109.47217 * 299.99338 * 1 2 3 24 24 H 1.08997 * 109.47576 * 60.00272 * 1 2 3 25 25 H 1.09004 * 109.47224 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46603 * 240.00333 * 2 1 3 27 27 H 1.08995 * 109.47108 * 120.00325 * 2 1 3 28 28 H 1.08996 * 109.47543 * 60.00463 * 3 2 1 29 29 H 1.08995 * 109.47506 * 300.00081 * 3 2 1 30 30 H 0.97000 * 120.00588 * 184.94933 * 8 7 5 31 31 H 1.09002 * 109.47041 * 295.05122 * 15 13 4 32 32 H 1.08997 * 109.47450 * 55.05293 * 15 13 4 33 33 H 1.08997 * 109.47542 * 299.99464 * 16 15 13 34 34 H 1.09004 * 109.47210 * 59.99916 * 16 15 13 35 35 H 1.08999 * 109.47177 * 270.24161 * 20 19 18 36 36 H 1.09001 * 109.47413 * 30.24264 * 20 19 18 37 37 H 1.09003 * 109.47433 * 150.24125 * 20 19 18 38 38 H 1.07994 * 126.04011 * 179.79078 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1910 1.4423 1.1864 6 1 5.1327 0.9195 1.2657 7 6 3.6747 2.1147 2.2873 8 7 2.8141 3.0929 2.1156 9 14 4.2040 1.6283 4.0114 10 1 5.6732 1.7973 4.1444 11 1 3.5141 2.4918 5.0031 12 1 3.8447 0.2084 4.2573 13 6 4.1784 1.4427 -1.1682 14 8 3.5750 1.5368 -2.2162 15 6 5.6813 1.3322 -1.1711 16 6 6.1823 1.2320 -2.6133 17 6 7.6854 1.1221 -2.6163 18 7 8.3449 0.0142 -2.5662 19 6 9.6601 0.0967 -2.5813 20 6 10.5536 -1.1158 -2.5329 21 6 10.1365 1.3440 -2.6380 22 16 8.7635 2.4475 -2.6793 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8932 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9563 -0.8899 30 1 2.5085 3.6094 2.8776 31 1 6.1114 2.2147 -0.6975 32 1 5.9812 0.4412 -0.6196 33 1 5.7523 0.3495 -3.0869 34 1 5.8824 2.1230 -3.1649 35 1 10.7744 -1.3632 -1.4946 36 1 10.0497 -1.9577 -3.0077 37 1 11.4831 -0.9037 -3.0614 38 1 11.1789 1.6258 -2.6559 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345724830.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:06 Heat of formation + Delta-G solvation = -24.304772 kcal Electronic energy + Delta-G solvation = -19729.594690 eV Core-core repulsion = 16697.793323 eV Total energy + Delta-G solvation = -3031.801367 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.93862 -40.43481 -37.16193 -35.14625 -34.43939 -33.20653 -31.86925 -28.57815 -28.04584 -27.13594 -25.66717 -23.16457 -22.19206 -20.95867 -20.63029 -18.76774 -18.54014 -17.78918 -16.76127 -16.36693 -16.16500 -15.96960 -15.77776 -15.41824 -14.90047 -14.63045 -14.24604 -13.86643 -13.75973 -13.52232 -13.31942 -13.18999 -13.18143 -12.97530 -12.71263 -12.56004 -12.36076 -12.19160 -12.14287 -12.06281 -11.94371 -11.52597 -11.03711 -10.62964 -10.41203 -10.33261 -9.60779 -9.46335 -8.30632 -6.02928 -0.27036 0.42454 0.82906 1.41016 1.48519 1.56284 1.79594 1.99905 2.31153 2.86244 3.03955 3.23636 3.92976 4.12710 4.15210 4.17613 4.28480 4.32425 4.38007 4.46337 4.57334 4.67209 4.79721 4.83873 4.86370 4.88379 4.96741 5.04847 5.08909 5.09362 5.22097 5.37240 5.39817 5.45585 5.60147 6.02026 6.42485 6.81616 7.11121 7.57913 8.01583 8.71404 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.016898 B = 0.004609 C = 0.004089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.592969 B = 6073.038080 C = 6845.579647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.124 4.124 3 C 0.108 3.892 4 N -0.449 5.449 5 C -0.360 4.360 6 H 0.096 0.904 7 C 0.008 3.992 8 N -0.888 5.888 9 Si 0.979 3.021 10 H -0.264 1.264 11 H -0.281 1.281 12 H -0.269 1.269 13 C 0.456 3.544 14 O -0.634 6.634 15 C -0.096 4.096 16 C -0.017 4.017 17 C 0.043 3.957 18 N -0.501 5.501 19 C 0.042 3.958 20 C -0.074 4.074 21 C -0.259 4.259 22 S 0.140 5.860 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.072 0.928 26 H 0.039 0.961 27 H 0.054 0.946 28 H 0.096 0.904 29 H 0.035 0.965 30 H 0.274 0.726 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.100 0.900 38 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.977 -3.604 -3.979 13.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.162 4.162 3 C -0.015 4.015 4 N -0.166 5.166 5 C -0.488 4.488 6 H 0.114 0.886 7 C -0.195 4.195 8 N -0.525 5.525 9 Si 0.803 3.197 10 H -0.189 1.189 11 H -0.206 1.206 12 H -0.194 1.194 13 C 0.246 3.754 14 O -0.523 6.523 15 C -0.137 4.137 16 C -0.058 4.058 17 C -0.235 4.235 18 N -0.217 5.217 19 C -0.089 4.089 20 C -0.134 4.134 21 C -0.398 4.398 22 S 0.395 5.605 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.091 0.909 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.114 0.886 29 H 0.054 0.946 30 H 0.084 0.916 31 H 0.107 0.893 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.119 0.881 38 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 11.093 -2.840 -4.361 12.253 hybrid contribution 0.405 -0.642 0.863 1.149 sum 11.498 -3.482 -3.498 12.512 Atomic orbital electron populations 1.21610 0.93583 1.02361 1.01781 1.21715 0.97296 0.96848 1.00384 1.21503 0.81420 0.96509 1.02109 1.43744 1.05344 1.62529 1.04994 1.19684 1.07730 1.33864 0.87480 0.88608 1.26112 0.96424 0.93512 1.03501 1.69938 1.32543 1.16989 1.33080 0.85203 0.78909 0.78504 0.77108 1.18853 1.20622 1.19360 1.20916 0.90565 0.80298 0.83641 1.90485 1.71399 1.57641 1.32776 1.21175 0.92092 1.03849 0.96594 1.19829 0.84778 1.04302 0.96929 1.26926 1.01498 0.91760 1.03280 1.66164 1.08384 1.30076 1.17071 1.20868 0.89043 0.97099 1.01921 1.20440 0.97110 0.92137 1.03670 1.27209 1.04766 0.94602 1.13228 1.83920 0.97338 1.12223 1.67011 0.92572 0.92809 0.90901 0.94175 0.92748 0.88648 0.94646 0.91599 0.89330 0.89859 0.89922 0.89232 0.90004 0.91302 0.88112 0.77372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.50 9.91 71.98 0.71 -3.79 16 2 C -0.12 -5.18 6.26 30.59 0.19 -4.99 16 3 C 0.11 5.35 5.05 86.37 0.44 5.78 16 4 N -0.45 -23.15 2.55 -635.54 -1.62 -24.77 16 5 C -0.36 -18.25 8.77 84.04 0.74 -17.51 16 6 H 0.10 4.63 6.86 -2.91 -0.02 4.61 16 7 C 0.01 0.40 4.96 84.93 0.42 0.82 16 8 N -0.89 -46.73 11.30 21.66 0.24 -46.48 16 9 Si 0.98 39.02 29.61 68.60 2.03 41.05 16 10 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 11 H -0.28 -11.02 7.11 99.48 0.71 -10.32 16 12 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 13 C 0.46 22.70 7.62 87.65 0.67 23.37 16 14 O -0.63 -34.14 15.54 -3.07 -0.05 -34.18 16 15 C -0.10 -3.92 4.34 29.85 0.13 -3.79 16 16 C -0.02 -0.62 5.10 29.85 0.15 -0.47 16 17 C 0.04 1.37 6.64 88.52 0.59 1.96 16 18 N -0.50 -16.27 10.53 -179.40 -1.89 -18.16 16 19 C 0.04 1.07 6.74 41.52 0.28 1.35 16 20 C -0.07 -1.32 10.31 71.23 0.73 -0.58 16 21 C -0.26 -5.56 11.13 66.77 0.74 -4.82 16 22 S 0.14 3.56 23.18 -56.49 -1.31 2.25 16 23 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.10 4.99 5.32 -2.39 -0.01 4.97 16 29 H 0.03 1.84 7.36 -2.39 -0.02 1.82 16 30 H 0.27 13.55 8.32 -92.71 -0.77 12.78 16 31 H 0.09 3.56 8.14 -2.39 -0.02 3.54 16 32 H 0.08 3.38 7.55 -2.39 -0.02 3.37 16 33 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 34 H 0.09 3.18 8.04 -2.39 -0.02 3.16 16 35 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.10 1.17 8.12 -2.39 -0.02 1.15 16 38 H 0.21 2.80 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -63.36 333.74 4.25 -59.11 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: 1.04 Total: 23.86 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: 5.79 Total: -2.67 kcal Atomic # 7 Polarization: -86.15 SS G_CDS: -3.26 Total: -89.42 kcal Atomic # 8 Polarization: -34.14 SS G_CDS: -0.05 Total: -34.18 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.05 kcal Atomic # 16 Polarization: 3.56 SS G_CDS: -1.31 Total: 2.25 kcal Total: -63.36 4.25 -59.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345724830.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.805 kcal (2) G-P(sol) polarization free energy of solvation -63.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds