Wall clock time and date at job start Tue Mar 31 2020 05:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33640 * 122.75089 * 2 1 4 4 S 1.76195 * 107.92432 * 179.97438 * 3 2 1 5 5 C 1.70978 * 90.28375 * 0.27465 * 4 3 2 6 6 C 1.50697 * 124.91613 * 179.84140 * 5 4 3 7 7 C 1.52997 * 109.47207 * 269.99829 * 6 5 4 8 8 C 1.50697 * 109.47207 * 179.97438 * 7 6 5 9 9 O 1.21283 * 120.00319 * 0.02562 * 8 7 6 10 10 N 1.34781 * 120.00090 * 180.02562 * 8 7 6 11 11 C 1.46493 * 120.00192 * 180.02562 * 10 8 7 12 12 C 1.53007 * 109.47268 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47183 * 179.97438 * 12 11 10 14 14 C 1.50696 * 109.47157 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99949 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00136 * 180.02562 * 14 13 12 17 17 N 1.31520 * 120.00052 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00216 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47356 * 59.99494 * 18 16 14 20 20 H 1.48497 * 109.47173 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.46800 * 300.00005 * 18 16 14 22 22 N 1.29028 * 110.16487 * 359.84202 * 5 4 3 23 23 H 1.09002 * 109.47152 * 269.73104 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.73205 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.73186 * 1 2 3 26 26 H 1.08001 * 126.03754 * 0.04014 * 3 2 1 27 27 H 1.09001 * 109.47564 * 30.00196 * 6 5 4 28 28 H 1.09005 * 109.47191 * 150.00231 * 6 5 4 29 29 H 1.08994 * 109.47304 * 300.00241 * 7 6 5 30 30 H 1.09005 * 109.46716 * 60.00111 * 7 6 5 31 31 H 0.97008 * 119.99701 * 359.97438 * 10 8 7 32 32 H 1.09001 * 109.47429 * 300.00095 * 11 10 8 33 33 H 1.09005 * 109.47224 * 60.00068 * 11 10 8 34 34 H 1.08993 * 109.46743 * 299.99957 * 12 11 10 35 35 H 1.09005 * 109.46815 * 59.99973 * 12 11 10 36 36 H 1.09001 * 109.47636 * 300.00327 * 13 12 11 37 37 H 1.09005 * 109.47102 * 60.00351 * 13 12 11 38 38 H 0.97000 * 120.00297 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1240 0.0000 4 16 3.9333 0.6731 0.0007 5 6 3.5040 -0.9819 -0.0072 6 6 4.4835 -2.1271 -0.0141 7 6 4.8134 -2.5073 -1.4589 8 6 5.7934 -3.6521 -1.4657 9 8 6.1887 -4.1183 -0.4182 10 7 6.2307 -4.1579 -2.6360 11 6 7.1829 -5.2711 -2.6427 12 6 7.5129 -5.6513 -4.0876 13 6 8.5079 -6.8135 -4.0946 14 6 8.8325 -7.1884 -5.5176 15 1 8.3752 -6.6511 -6.3353 16 6 9.7133 -8.2172 -5.7758 17 7 10.2698 -8.8719 -4.7801 18 14 10.1162 -8.6815 -7.5398 19 1 10.7150 -7.5137 -8.2346 20 1 11.0809 -9.8104 -7.5466 21 1 8.8721 -9.0898 -8.2406 22 7 2.2199 -1.1083 -0.0065 23 1 -0.3633 -0.0048 1.0277 24 1 -0.3633 -0.8876 -0.5180 25 1 -0.3633 0.8924 -0.5097 26 1 1.8392 2.1308 0.0006 27 1 5.3966 -1.8274 0.5003 28 1 4.0439 -2.9843 0.4958 29 1 3.9004 -2.8071 -1.9732 30 1 5.2530 -1.6501 -1.9688 31 1 5.9142 -3.7852 -3.4739 32 1 8.0958 -4.9715 -2.1279 33 1 6.7431 -6.1285 -2.1332 34 1 6.5999 -5.9511 -4.6019 35 1 7.9525 -4.7940 -4.5975 36 1 9.4209 -6.5134 -3.5803 37 1 8.0687 -7.6709 -3.5846 38 1 10.8898 -9.5955 -4.9617 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345856523.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:12 Heat of formation + Delta-G solvation = -24.715877 kcal Electronic energy + Delta-G solvation = -18311.411323 eV Core-core repulsion = 15279.592129 eV Total energy + Delta-G solvation = -3031.819194 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.25767 -39.50887 -35.55929 -34.37763 -33.32324 -31.60915 -30.96043 -28.04099 -27.30668 -25.76397 -23.19657 -22.14105 -20.73870 -20.02820 -19.83534 -17.98653 -16.97025 -16.44231 -15.87522 -15.59347 -15.38255 -15.03918 -14.61979 -14.46124 -13.86676 -13.79694 -13.28691 -13.07398 -12.87402 -12.67530 -12.27639 -12.19779 -11.82747 -11.72740 -11.63488 -11.36617 -10.88994 -10.74182 -10.63384 -9.97557 -9.90939 -9.87530 -9.72480 -9.39648 -9.14412 -8.99407 -8.80134 -8.37604 -6.02294 -4.05593 0.36718 1.04587 1.43313 2.43724 2.73756 3.30605 3.31620 3.36510 3.38701 3.78958 4.43576 4.51093 4.69417 4.79202 4.81804 4.89664 5.05915 5.21669 5.28189 5.31852 5.33263 5.46064 5.65655 5.71604 5.76790 5.78710 5.93124 6.15080 6.46671 6.58622 6.81470 6.99134 7.44492 7.62377 7.67201 7.75117 7.96168 8.33886 8.38309 9.00834 9.58534 11.08895 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.042053 B = 0.002166 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.667631 B =12925.832509 C =13082.094898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.068 3.932 3 C -0.269 4.269 4 S 0.120 5.880 5 C 0.060 3.940 6 C -0.029 4.029 7 C -0.135 4.135 8 C 0.510 3.490 9 O -0.544 6.544 10 N -0.725 5.725 11 C 0.116 3.884 12 C -0.121 4.121 13 C 0.024 3.976 14 C -0.523 4.523 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.894 5.894 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 N -0.471 5.471 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.176 0.824 27 H 0.096 0.904 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.399 0.601 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.161 21.786 8.920 29.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.064 4.064 3 C -0.408 4.408 4 S 0.375 5.625 5 C -0.218 4.218 6 C -0.070 4.070 7 C -0.176 4.176 8 C 0.295 3.705 9 O -0.422 6.422 10 N -0.376 5.376 11 C -0.007 4.007 12 C -0.159 4.159 13 C -0.014 4.014 14 C -0.562 4.562 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.533 5.533 18 Si 0.722 3.278 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 N -0.186 5.186 23 H 0.094 0.906 24 H 0.096 0.904 25 H 0.093 0.907 26 H 0.193 0.807 27 H 0.114 0.886 28 H 0.123 0.877 29 H 0.118 0.882 30 H 0.113 0.887 31 H 0.233 0.767 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.001 21.318 9.725 28.374 hybrid contribution -0.784 -0.044 -1.423 1.625 sum -16.785 21.273 8.303 28.341 Atomic orbital electron populations 1.20371 0.87083 1.03414 1.03007 1.20355 0.98345 0.86515 1.01220 1.26815 0.95228 1.03959 1.14806 1.84090 1.07269 1.03148 1.67948 1.27101 0.94022 0.98317 1.02374 1.20013 0.95877 0.94055 0.97093 1.21636 1.00085 0.98112 0.97816 1.20428 0.81903 0.84045 0.84106 1.90715 1.58481 1.61474 1.31547 1.46218 1.46709 1.36557 1.08123 1.21661 0.91551 0.87750 0.99742 1.21891 1.00871 1.00888 0.92247 1.19028 0.93307 0.91741 0.97318 1.21163 1.25964 1.16749 0.92288 0.92704 1.25037 0.96040 0.96294 0.97125 1.69955 1.30001 1.22452 1.30845 0.86634 0.78184 0.78016 0.85005 1.20247 1.21269 1.20246 1.66155 1.04537 1.31586 1.16309 0.90613 0.90449 0.90736 0.80706 0.88591 0.87736 0.88244 0.88722 0.76732 0.91717 0.91726 0.92718 0.92730 0.96272 0.96270 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 10.31 36.01 0.37 -0.13 16 2 C 0.07 0.62 6.74 -84.22 -0.57 0.06 16 3 C -0.27 -2.09 11.13 29.12 0.32 -1.76 16 4 S 0.12 0.97 23.18 -107.50 -2.49 -1.52 16 5 C 0.06 0.61 6.64 -13.46 -0.09 0.52 16 6 C -0.03 -0.29 5.09 -27.89 -0.14 -0.44 16 7 C -0.13 -1.30 5.68 -27.89 -0.16 -1.46 16 8 C 0.51 7.00 7.83 -10.99 -0.09 6.92 16 9 O -0.54 -9.64 15.98 5.56 0.09 -9.55 16 10 N -0.73 -9.92 5.56 -60.29 -0.33 -10.25 16 11 C 0.12 2.00 5.67 -4.04 -0.02 1.98 16 12 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 13 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 14 C -0.52 -14.57 9.11 -34.44 -0.31 -14.89 16 15 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.89 -26.78 13.29 55.43 0.74 -26.05 16 18 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 N -0.47 -5.29 10.53 -8.06 -0.08 -5.38 16 23 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.33 8.12 -51.93 -0.42 -0.10 16 26 H 0.18 0.89 8.06 -52.49 -0.42 0.46 16 27 H 0.10 0.93 8.10 -51.93 -0.42 0.51 16 28 H 0.10 1.18 8.10 -51.93 -0.42 0.76 16 29 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.40 4.31 8.47 -40.82 -0.35 3.96 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 341.62 15.07 5.15 5.15 Total: -1.00 -33.23 341.62 -8.82 -42.05 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -5.80 Total: -1.17 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -1.06 Total: -9.72 kcal Atomic # 7 Polarization: -41.99 SS G_CDS: 0.32 Total: -41.68 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.09 Total: -9.55 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -2.49 Total: -1.52 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.23 -8.82 -42.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345856523.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.337 kcal (2) G-P(sol) polarization free energy of solvation -33.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds