Wall clock time and date at job start Tue Mar 31 2020 05:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47878 * 2 1 4 4 C 1.53007 * 109.46962 * 239.99738 * 2 1 3 5 5 C 1.50700 * 109.46726 * 60.00445 * 4 2 1 6 6 H 1.07990 * 120.00152 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99594 * 179.97438 * 5 4 2 8 8 N 1.31504 * 119.99701 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99884 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47000 * 90.00065 * 9 7 5 11 11 H 1.48503 * 109.46613 * 210.00045 * 9 7 5 12 12 H 1.48500 * 109.47217 * 329.99732 * 9 7 5 13 13 C 1.53004 * 109.46885 * 120.00127 * 2 1 3 14 14 N 1.46497 * 109.47194 * 299.99460 * 13 2 1 15 15 C 1.34775 * 120.00158 * 179.97438 * 14 13 2 16 16 O 1.21603 * 120.00019 * 0.02562 * 15 14 13 17 17 N 1.34773 * 119.99917 * 180.02562 * 15 14 13 18 18 C 1.40820 * 120.00022 * 184.73526 * 17 15 14 19 19 C 1.38784 * 122.61243 * 328.31675 * 18 17 15 20 20 C 1.33385 * 114.88252 * 180.02562 * 19 18 17 21 21 S 1.75855 * 109.70440 * 359.73402 * 20 19 18 22 22 C 1.33777 * 122.61782 * 148.33231 * 18 17 15 23 23 H 1.09004 * 109.46697 * 300.00602 * 1 2 3 24 24 H 1.09005 * 109.46667 * 59.99429 * 1 2 3 25 25 H 1.08994 * 109.47500 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47337 * 180.02562 * 3 2 1 27 27 H 1.08995 * 109.46970 * 300.00300 * 3 2 1 28 28 H 1.09005 * 109.46985 * 59.99597 * 3 2 1 29 29 H 1.08997 * 109.46821 * 180.02562 * 4 2 1 30 30 H 1.09003 * 109.46969 * 300.00648 * 4 2 1 31 31 H 0.97001 * 120.00231 * 180.02562 * 8 7 5 32 32 H 1.09001 * 109.47081 * 179.97438 * 13 2 1 33 33 H 1.09007 * 109.46919 * 59.99772 * 13 2 1 34 34 H 0.96999 * 119.99956 * 0.02562 * 14 13 2 35 35 H 0.96997 * 120.00106 * 4.73647 * 17 15 14 36 36 H 1.07991 * 122.56160 * 0.03766 * 19 18 17 37 37 H 1.08008 * 125.14522 * 179.97438 * 20 19 18 38 38 H 1.08001 * 125.20113 * 359.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9172 0.8674 -2.3806 7 6 1.8712 -0.4817 -3.7320 8 7 1.4333 0.1386 -4.8057 9 14 2.9450 -2.0006 -3.9033 10 1 2.0863 -3.2112 -3.9494 11 1 3.7374 -1.9077 -5.1559 12 1 3.8650 -2.0901 -2.7411 13 6 2.0399 -0.7213 1.2493 14 7 1.5517 -0.0307 2.4454 15 6 1.8768 -0.4914 3.6695 16 8 2.5758 -1.4802 3.7811 17 7 1.4272 0.1437 4.7699 18 6 1.8471 -0.2768 6.0466 19 6 2.1489 -1.6001 6.3365 20 6 2.5304 -1.8261 7.5945 21 16 2.5302 -0.3154 8.4946 22 6 1.9860 0.5679 7.0746 23 1 -0.3633 0.5140 0.8900 24 1 -0.3633 0.5140 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 3.1302 1.4423 -0.0005 27 1 1.6768 1.9563 -0.8899 28 1 1.6768 1.9563 0.8900 29 1 3.1299 -0.7217 -1.2490 30 1 1.6765 -1.7490 -1.2493 31 1 1.6675 -0.1928 -5.6868 32 1 3.1299 -0.7217 1.2491 33 1 1.6765 -1.7490 1.2492 34 1 0.9938 0.7578 2.3564 35 1 0.8143 0.8904 4.6825 36 1 2.0803 -2.3867 5.5998 37 1 2.8024 -2.7903 7.9980 38 1 1.7971 1.6306 7.0370 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349892413.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:01 Heat of formation + Delta-G solvation = -2.214924 kcal Electronic energy + Delta-G solvation = -19613.182821 eV Core-core repulsion = 16582.339341 eV Total energy + Delta-G solvation = -3030.843479 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.56067 -38.27342 -36.96683 -34.11532 -33.38773 -32.04371 -29.27487 -27.83043 -26.59473 -26.24860 -23.82884 -22.63309 -21.25206 -19.63177 -18.89001 -17.84868 -17.78830 -16.89719 -16.22073 -15.51849 -15.25119 -14.40216 -14.13564 -13.88847 -13.73373 -13.44792 -13.27483 -13.04104 -12.75692 -12.63811 -12.39459 -12.28494 -11.29206 -11.17127 -11.10095 -11.03136 -10.64724 -10.52255 -10.44582 -10.12496 -10.00035 -9.76900 -9.56115 -9.02224 -8.95438 -8.86151 -8.55265 -8.05737 -6.05997 -4.03462 0.81621 1.43545 1.73400 2.47019 2.78342 3.29300 3.30661 3.38823 3.42799 4.18691 4.44295 4.76479 5.11871 5.26566 5.30345 5.35167 5.49869 5.59067 5.69090 5.95573 6.00324 6.07213 6.08572 6.13533 6.28194 6.43709 6.55412 6.56216 6.64861 6.82312 6.89858 6.98551 7.02249 7.17577 7.34032 7.75775 7.92430 8.49781 8.53216 8.97859 9.56654 11.06715 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.043343 B = 0.003017 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.859486 B = 9277.197668 C = 9668.669744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.063 4.063 3 C -0.128 4.128 4 C -0.002 4.002 5 C -0.512 4.512 6 H 0.078 0.922 7 C 0.067 3.933 8 N -0.904 5.904 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.143 3.857 14 N -0.730 5.730 15 C 0.702 3.298 16 O -0.577 6.577 17 N -0.680 5.680 18 C 0.167 3.833 19 C -0.126 4.126 20 C -0.205 4.205 21 S 0.103 5.897 22 C -0.268 4.268 23 H 0.030 0.970 24 H 0.073 0.927 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.073 0.927 28 H 0.030 0.970 29 H 0.019 0.981 30 H 0.014 0.986 31 H 0.262 0.738 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.397 0.603 35 H 0.406 0.594 36 H 0.160 0.840 37 H 0.167 0.833 38 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.886 1.224 24.122 24.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.063 4.063 3 C -0.186 4.186 4 C -0.040 4.040 5 C -0.549 4.549 6 H 0.096 0.904 7 C -0.134 4.134 8 N -0.543 5.543 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.020 3.980 14 N -0.385 5.385 15 C 0.401 3.599 16 O -0.455 6.455 17 N -0.329 5.329 18 C 0.060 3.940 19 C -0.157 4.157 20 C -0.340 4.340 21 S 0.364 5.636 22 C -0.407 4.407 23 H 0.049 0.951 24 H 0.092 0.908 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.091 0.909 28 H 0.049 0.951 29 H 0.037 0.963 30 H 0.033 0.967 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.232 0.768 35 H 0.242 0.758 36 H 0.177 0.823 37 H 0.185 0.815 38 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 0.122 0.703 25.390 25.400 hybrid contribution -0.332 -0.408 -1.852 1.925 sum -0.210 0.294 23.538 23.541 Atomic orbital electron populations 1.21776 0.94769 1.01295 1.00734 1.20709 0.95848 0.95954 0.93826 1.21771 1.00509 0.95555 1.00724 1.19592 0.96340 0.95517 0.92518 1.21069 1.31897 1.13367 0.88603 0.90397 1.24998 0.95689 0.96759 0.95978 1.69895 1.45921 1.40561 0.97901 0.86858 0.81337 0.83894 0.77687 1.20359 1.21504 1.18953 1.21574 0.98833 0.95722 0.81869 1.45334 1.55819 1.33095 1.04231 1.15967 0.80450 0.83014 0.80434 1.90908 1.42306 1.26733 1.85504 1.42541 1.50318 1.37230 1.02835 1.16548 1.00602 0.92328 0.84537 1.20340 1.01983 0.96732 0.96692 1.25524 1.09244 1.01781 0.97466 1.84103 1.67225 0.99455 1.12858 1.25063 1.15271 1.03218 0.97157 0.95102 0.90843 0.93350 0.93348 0.90852 0.95088 0.96301 0.96747 0.92774 0.91762 0.91769 0.76775 0.75833 0.82260 0.81549 0.81740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 8.05 37.16 0.30 -1.84 16 2 C -0.06 -1.11 0.54 -154.51 -0.08 -1.19 16 3 C -0.13 -2.15 8.05 37.16 0.30 -1.85 16 4 C 0.00 -0.04 3.11 -27.88 -0.09 -0.13 16 5 C -0.51 -13.49 8.20 -34.44 -0.28 -13.77 16 6 H 0.08 2.17 5.92 -52.49 -0.31 1.86 16 7 C 0.07 1.87 5.47 -17.82 -0.10 1.78 16 8 N -0.90 -27.01 13.96 55.43 0.77 -26.24 16 9 Si 0.87 21.33 27.47 -169.99 -4.67 16.66 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 12 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 13 C 0.14 2.33 4.56 -4.04 -0.02 2.31 16 14 N -0.73 -9.75 4.96 -65.22 -0.32 -10.07 16 15 C 0.70 10.09 8.47 -86.92 -0.74 9.35 16 16 O -0.58 -10.42 13.89 5.28 0.07 -10.35 16 17 N -0.68 -7.50 5.43 -15.19 -0.08 -7.59 16 18 C 0.17 1.93 6.30 -85.09 -0.54 1.40 16 19 C -0.13 -1.54 8.88 -41.08 -0.36 -1.91 16 20 C -0.20 -2.01 11.22 29.04 0.33 -1.69 16 21 S 0.10 0.89 23.33 -107.50 -2.51 -1.62 16 22 C -0.27 -2.53 11.19 29.17 0.33 -2.21 16 23 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 24 H 0.07 1.39 6.62 -51.93 -0.34 1.04 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.07 1.39 6.62 -51.93 -0.34 1.05 16 28 H 0.03 0.41 6.86 -51.93 -0.36 0.06 16 29 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 30 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 34 H 0.40 4.34 6.18 -40.82 -0.25 4.09 16 35 H 0.41 3.11 8.84 -40.82 -0.36 2.75 16 36 H 0.16 2.24 6.40 -52.49 -0.34 1.90 16 37 H 0.17 1.25 8.06 -52.48 -0.42 0.82 16 38 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 319.90 15.07 4.82 4.82 Total: -1.00 -31.36 319.90 -8.00 -39.36 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -5.13 Total: 4.77 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: -0.96 Total: -9.75 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: 0.37 Total: -43.90 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.07 Total: -10.35 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Atomic # 16 Polarization: 0.89 SS G_CDS: -2.51 Total: -1.62 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.36 -8.00 -39.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349892413.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.146 kcal (2) G-P(sol) polarization free energy of solvation -31.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds