Wall clock time and date at job start Tue Mar 31 2020 05:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29429 * 124.80292 * 2 1 4 4 C 1.30940 * 117.36128 * 180.02562 * 3 2 1 5 5 C 1.35670 * 114.19359 * 0.02562 * 4 3 2 6 6 C 1.46681 * 126.13198 * 179.97438 * 5 4 3 7 7 O 1.21687 * 119.99929 * 359.97438 * 6 5 4 8 8 N 1.34769 * 120.00138 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00237 * 179.97438 * 8 6 5 10 10 C 1.53006 * 109.46998 * 180.02562 * 9 8 6 11 11 C 1.52997 * 109.47127 * 299.99786 * 10 9 8 12 12 C 1.52997 * 109.47164 * 59.99949 * 10 9 8 13 13 C 1.52999 * 109.46623 * 179.97438 * 10 9 8 14 14 C 1.50706 * 109.46953 * 179.97438 * 13 10 9 15 15 H 1.07999 * 119.99816 * 0.02562 * 14 13 10 16 16 C 1.37876 * 120.00344 * 180.02562 * 14 13 10 17 17 N 1.31514 * 119.99769 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00300 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46691 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46740 * 119.99592 * 18 16 14 21 21 H 1.48497 * 109.47025 * 239.99950 * 18 16 14 22 22 S 1.70951 * 124.80179 * 180.35749 * 2 1 3 23 23 H 1.08996 * 109.47382 * 89.97140 * 1 2 3 24 24 H 1.08998 * 109.47090 * 209.97361 * 1 2 3 25 25 H 1.09005 * 109.46752 * 329.97618 * 1 2 3 26 26 H 1.08004 * 122.90594 * 179.97438 * 4 3 2 27 27 H 0.97010 * 119.99854 * 0.02562 * 8 6 5 28 28 H 1.08993 * 109.47452 * 60.00368 * 9 8 6 29 29 H 1.09000 * 109.47175 * 300.00158 * 9 8 6 30 30 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 31 31 H 1.09002 * 109.47153 * 180.02562 * 11 10 9 32 32 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 33 33 H 1.09000 * 109.47140 * 60.00051 * 12 10 9 34 34 H 1.09001 * 109.47230 * 179.97438 * 12 10 9 35 35 H 1.09001 * 109.47375 * 300.00034 * 12 10 9 36 36 H 1.09000 * 109.47486 * 299.99829 * 13 10 9 37 37 H 1.09001 * 109.47362 * 60.00551 * 13 10 9 38 38 H 0.97000 * 120.00540 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2458 1.0628 0.0000 4 6 3.5441 0.8932 -0.0005 5 6 3.9352 -0.4059 -0.0015 6 6 5.3189 -0.8927 -0.0028 7 8 6.2425 -0.1004 -0.0035 8 7 5.5673 -2.2173 -0.0033 9 6 6.9493 -2.7034 -0.0051 10 6 6.9516 -4.2335 -0.0059 11 6 6.2327 -4.7452 1.2440 12 6 6.2297 -4.7440 -1.2545 13 6 8.3949 -4.7411 -0.0085 14 6 8.3974 -6.2482 -0.0086 15 1 7.4629 -6.7897 -0.0074 16 6 9.5925 -6.9357 -0.0102 17 7 10.7304 -6.2763 -0.0122 18 14 9.5955 -8.8037 -0.0096 19 1 8.1962 -9.3008 -0.0079 20 1 10.2944 -9.2979 -1.2231 21 1 10.2982 -9.2972 1.2019 22 16 2.4827 -1.4037 -0.0088 23 1 -0.3634 0.0005 -1.0276 24 1 -0.3633 -0.8902 0.5134 25 1 -0.3633 0.8898 0.5142 26 1 4.2434 1.7163 -0.0010 27 1 4.8309 -2.8489 -0.0031 28 1 7.4637 -2.3395 0.8842 29 1 7.4613 -2.3392 -0.8957 30 1 5.2045 -4.3835 1.2453 31 1 6.2348 -5.8352 1.2437 32 1 6.7470 -4.3815 2.1335 33 1 6.7419 -4.3795 -2.1449 34 1 6.2318 -5.8340 -1.2553 35 1 5.2015 -4.3823 -1.2531 36 1 8.9068 -4.3766 -0.8991 37 1 8.9096 -4.3775 0.8809 38 1 11.5712 -6.7599 -0.0137 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359760702.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:14 Heat of formation + Delta-G solvation = -14.117087 kcal Electronic energy + Delta-G solvation = -19516.391959 eV Core-core repulsion = 16485.032363 eV Total energy + Delta-G solvation = -3031.359596 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.30147 -39.26127 -37.12433 -33.73903 -32.61900 -32.08704 -29.18939 -27.15244 -26.56829 -26.30075 -24.51385 -23.08900 -21.47609 -19.88636 -18.65318 -18.15612 -16.79944 -16.30485 -15.81773 -15.61237 -14.87063 -14.76844 -14.50821 -14.03266 -13.74682 -13.68986 -13.16806 -12.91488 -12.82761 -12.77110 -12.20393 -12.09975 -11.83272 -11.21826 -11.06311 -10.86810 -10.68940 -10.46745 -10.29086 -10.26737 -9.95094 -9.93550 -9.76939 -9.24133 -9.18762 -8.95770 -8.84759 -8.38927 -6.02684 -4.04142 0.01015 0.88908 1.30665 2.26920 3.16334 3.21450 3.28324 3.36651 3.38819 3.78622 4.42860 4.62419 4.78667 4.99312 5.02440 5.10049 5.32905 5.42450 5.45092 5.55827 5.68407 5.84749 6.10427 6.15441 6.20726 6.32370 6.42737 6.57834 6.66463 6.99954 7.02254 7.06605 7.31441 7.54058 7.61009 7.72206 7.95726 8.17876 8.37432 9.00733 9.59251 11.08806 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.036752 B = 0.003366 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.673628 B = 8317.176152 C = 8877.181853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.054 3.946 3 N -0.480 5.480 4 C 0.116 3.884 5 C -0.285 4.285 6 C 0.588 3.412 7 O -0.529 6.529 8 N -0.713 5.713 9 C 0.127 3.873 10 C -0.073 4.073 11 C -0.128 4.128 12 C -0.128 4.128 13 C 0.036 3.964 14 C -0.511 4.511 15 H 0.060 0.940 16 C 0.056 3.944 17 N -0.894 5.894 18 Si 0.889 3.111 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 S 0.164 5.836 23 H 0.090 0.910 24 H 0.084 0.916 25 H 0.092 0.908 26 H 0.189 0.811 27 H 0.396 0.604 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.027 0.973 31 H 0.069 0.931 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.069 0.931 35 H 0.027 0.973 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.423 9.251 0.005 22.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.221 4.221 3 N -0.195 5.195 4 C -0.041 4.041 5 C -0.409 4.409 6 C 0.372 3.628 7 O -0.407 6.407 8 N -0.364 5.364 9 C 0.005 3.995 10 C -0.074 4.074 11 C -0.185 4.185 12 C -0.185 4.185 13 C -0.001 4.001 14 C -0.550 4.550 15 H 0.078 0.922 16 C -0.145 4.145 17 N -0.533 5.533 18 Si 0.717 3.283 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 S 0.419 5.581 23 H 0.109 0.891 24 H 0.103 0.897 25 H 0.111 0.889 26 H 0.206 0.794 27 H 0.232 0.768 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.046 0.954 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.046 0.954 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -20.059 9.176 -0.003 22.058 hybrid contribution 0.479 -0.611 -0.004 0.777 sum -19.580 8.565 -0.008 21.372 Atomic orbital electron populations 1.20528 0.84709 1.04618 1.04276 1.27485 1.02227 0.91141 1.01257 1.66230 1.04847 1.31201 1.17180 1.22187 0.90665 0.95609 0.95665 1.25907 0.98171 0.97778 1.19066 1.16740 0.85743 0.83014 0.77276 1.90844 1.44166 1.55275 1.50450 1.46140 1.10700 1.05640 1.73955 1.21741 0.79994 0.95490 1.02275 1.20933 1.00846 0.90418 0.95192 1.21775 0.96964 1.02493 0.97306 1.21777 0.96949 1.02500 0.97316 1.19096 0.87417 0.96025 0.97591 1.21209 0.92164 0.91297 1.50285 0.92173 1.25015 0.95775 0.98187 0.95521 1.69971 0.97268 1.35243 1.50851 0.86589 0.78021 0.86149 0.77552 1.19786 1.21125 1.21118 1.83968 0.96717 1.11450 1.65917 0.89125 0.89714 0.88905 0.79435 0.76808 0.91317 0.91329 0.95402 0.91218 0.93213 0.93215 0.91216 0.95409 0.96246 0.96247 0.93058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 10.46 36.01 0.38 -0.05 16 2 C 0.05 0.50 7.39 -13.29 -0.10 0.40 16 3 N -0.48 -5.58 10.51 -11.50 -0.12 -5.70 16 4 C 0.12 1.43 11.09 -18.85 -0.21 1.22 16 5 C -0.29 -3.66 6.49 -37.09 -0.24 -3.90 16 6 C 0.59 9.22 7.79 -12.86 -0.10 9.12 16 7 O -0.53 -10.04 16.87 5.20 0.09 -9.95 16 8 N -0.71 -10.66 4.95 -61.62 -0.31 -10.96 16 9 C 0.13 2.23 4.56 -4.04 -0.02 2.21 16 10 C -0.07 -1.37 0.54 -154.51 -0.08 -1.45 16 11 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 12 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 13 C 0.04 0.87 4.04 -27.88 -0.11 0.76 16 14 C -0.51 -13.36 7.65 -34.44 -0.26 -13.63 16 15 H 0.06 1.51 5.68 -52.49 -0.30 1.21 16 16 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 17 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 18 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 19 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 S 0.16 1.55 22.31 -107.50 -2.40 -0.85 16 23 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.19 2.17 8.06 -52.48 -0.42 1.74 16 27 H 0.40 5.14 5.35 -40.82 -0.22 4.93 16 28 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 30 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 31 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 1.29 6.62 -51.93 -0.34 0.94 16 35 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 LS Contribution 327.96 15.07 4.94 4.94 Total: -1.00 -31.29 327.96 -7.61 -38.90 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -5.28 Total: 0.79 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -0.25 Total: -7.68 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: 0.31 Total: -42.09 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.09 Total: -9.95 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -2.40 Total: -0.85 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.29 -7.61 -38.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359760702.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.783 kcal (2) G-P(sol) polarization free energy of solvation -31.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds