Wall clock time and date at job start Tue Mar 31 2020 05:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29429 * 124.80292 * 2 1 4 4 C 1.30940 * 117.36128 * 180.02562 * 3 2 1 5 5 C 1.35670 * 114.19359 * 0.02562 * 4 3 2 6 6 C 1.46681 * 126.13198 * 179.97438 * 5 4 3 7 7 O 1.21687 * 119.99929 * 359.97438 * 6 5 4 8 8 N 1.34769 * 120.00138 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00237 * 179.97438 * 8 6 5 10 10 C 1.53006 * 109.46998 * 180.02562 * 9 8 6 11 11 C 1.52997 * 109.47127 * 299.99786 * 10 9 8 12 12 C 1.52997 * 109.47164 * 59.99949 * 10 9 8 13 13 C 1.52999 * 109.46623 * 179.97438 * 10 9 8 14 14 C 1.50706 * 109.46953 * 179.97438 * 13 10 9 15 15 H 1.07999 * 119.99816 * 0.02562 * 14 13 10 16 16 C 1.37876 * 120.00344 * 180.02562 * 14 13 10 17 17 N 1.31514 * 119.99769 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00300 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46691 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46740 * 119.99592 * 18 16 14 21 21 H 1.48497 * 109.47025 * 239.99950 * 18 16 14 22 22 S 1.70951 * 124.80179 * 180.35749 * 2 1 3 23 23 H 1.08996 * 109.47382 * 89.97140 * 1 2 3 24 24 H 1.08998 * 109.47090 * 209.97361 * 1 2 3 25 25 H 1.09005 * 109.46752 * 329.97618 * 1 2 3 26 26 H 1.08004 * 122.90594 * 179.97438 * 4 3 2 27 27 H 0.97010 * 119.99854 * 0.02562 * 8 6 5 28 28 H 1.08993 * 109.47452 * 60.00368 * 9 8 6 29 29 H 1.09000 * 109.47175 * 300.00158 * 9 8 6 30 30 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 31 31 H 1.09002 * 109.47153 * 180.02562 * 11 10 9 32 32 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 33 33 H 1.09000 * 109.47140 * 60.00051 * 12 10 9 34 34 H 1.09001 * 109.47230 * 179.97438 * 12 10 9 35 35 H 1.09001 * 109.47375 * 300.00034 * 12 10 9 36 36 H 1.09000 * 109.47486 * 299.99829 * 13 10 9 37 37 H 1.09001 * 109.47362 * 60.00551 * 13 10 9 38 38 H 0.97000 * 120.00540 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2458 1.0628 0.0000 4 6 3.5441 0.8932 -0.0005 5 6 3.9352 -0.4059 -0.0015 6 6 5.3189 -0.8927 -0.0028 7 8 6.2425 -0.1004 -0.0035 8 7 5.5673 -2.2173 -0.0033 9 6 6.9493 -2.7034 -0.0051 10 6 6.9516 -4.2335 -0.0059 11 6 6.2327 -4.7452 1.2440 12 6 6.2297 -4.7440 -1.2545 13 6 8.3949 -4.7411 -0.0085 14 6 8.3974 -6.2482 -0.0086 15 1 7.4629 -6.7897 -0.0074 16 6 9.5925 -6.9357 -0.0102 17 7 10.7304 -6.2763 -0.0122 18 14 9.5955 -8.8037 -0.0096 19 1 8.1962 -9.3008 -0.0079 20 1 10.2944 -9.2979 -1.2231 21 1 10.2982 -9.2972 1.2019 22 16 2.4827 -1.4037 -0.0088 23 1 -0.3634 0.0005 -1.0276 24 1 -0.3633 -0.8902 0.5134 25 1 -0.3633 0.8898 0.5142 26 1 4.2434 1.7163 -0.0010 27 1 4.8309 -2.8489 -0.0031 28 1 7.4637 -2.3395 0.8842 29 1 7.4613 -2.3392 -0.8957 30 1 5.2045 -4.3835 1.2453 31 1 6.2348 -5.8352 1.2437 32 1 6.7470 -4.3815 2.1335 33 1 6.7419 -4.3795 -2.1449 34 1 6.2318 -5.8340 -1.2553 35 1 5.2015 -4.3823 -1.2531 36 1 8.9068 -4.3766 -0.8991 37 1 8.9096 -4.3775 0.8809 38 1 11.5712 -6.7599 -0.0137 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359760702.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:14 Heat of formation + Delta-G solvation = -34.692640 kcal Electronic energy + Delta-G solvation = -19517.284181 eV Core-core repulsion = 16485.032363 eV Total energy + Delta-G solvation = -3032.251819 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.34410 -40.38687 -38.63842 -35.34404 -34.05954 -33.21464 -30.12009 -29.02280 -27.98856 -27.62636 -25.51136 -24.73316 -22.70274 -21.01965 -19.73903 -19.39944 -18.38103 -17.81969 -17.08120 -16.72314 -16.43967 -15.87473 -15.76044 -15.18744 -15.10465 -14.79912 -14.45922 -14.38758 -13.95185 -13.86200 -13.39880 -13.22607 -12.90310 -12.71930 -12.66495 -12.62343 -12.36103 -12.24554 -11.96525 -11.56917 -11.50124 -11.03101 -10.87856 -10.77173 -10.64933 -10.51696 -10.22806 -9.91998 -8.13577 -6.21246 -0.84964 0.09355 0.48508 1.33105 1.42528 1.43807 1.55270 1.98543 2.04756 2.45244 3.08657 3.21343 3.68784 3.91979 3.98025 4.04597 4.18792 4.20478 4.62382 4.65212 4.67922 4.68782 4.74350 4.92537 4.93107 5.03746 5.10615 5.17469 5.26787 5.41859 5.49496 5.51158 5.56186 5.78707 5.90066 6.27208 6.33812 6.53441 6.94056 6.97695 7.46660 8.99193 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.036752 B = 0.003366 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.673628 B = 8317.176152 C = 8877.181853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.064 3.936 3 N -0.506 5.506 4 C 0.120 3.880 5 C -0.323 4.323 6 C 0.591 3.409 7 O -0.572 6.572 8 N -0.703 5.703 9 C 0.140 3.860 10 C -0.066 4.066 11 C -0.123 4.123 12 C -0.124 4.124 13 C 0.040 3.960 14 C -0.512 4.512 15 H 0.074 0.926 16 C -0.005 4.005 17 N -0.939 5.939 18 Si 0.958 3.042 19 H -0.255 1.255 20 H -0.285 1.285 21 H -0.285 1.285 22 S 0.218 5.782 23 H 0.109 0.891 24 H 0.109 0.891 25 H 0.098 0.902 26 H 0.184 0.816 27 H 0.409 0.591 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.039 0.961 33 H 0.039 0.961 34 H 0.060 0.940 35 H 0.066 0.934 36 H -0.012 1.012 37 H -0.012 1.012 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.266 8.092 -0.010 25.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.210 4.210 3 N -0.221 5.221 4 C -0.039 4.039 5 C -0.447 4.447 6 C 0.377 3.623 7 O -0.454 6.454 8 N -0.354 5.354 9 C 0.016 3.984 10 C -0.066 4.066 11 C -0.181 4.181 12 C -0.181 4.181 13 C 0.003 3.997 14 C -0.550 4.550 15 H 0.092 0.908 16 C -0.202 4.202 17 N -0.580 5.580 18 Si 0.784 3.216 19 H -0.179 1.179 20 H -0.212 1.212 21 H -0.211 1.211 22 S 0.474 5.526 23 H 0.128 0.872 24 H 0.128 0.872 25 H 0.117 0.883 26 H 0.201 0.799 27 H 0.247 0.753 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.006 0.994 37 H 0.006 0.994 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -23.961 7.984 -0.018 25.257 hybrid contribution 1.559 -0.179 -0.001 1.569 sum -22.402 7.806 -0.019 23.723 Atomic orbital electron populations 1.20815 0.81633 1.06153 1.05873 1.28298 1.03933 0.90662 0.98074 1.66322 1.04441 1.32316 1.19059 1.22258 0.91310 0.95600 0.94684 1.25584 0.98022 0.98935 1.22130 1.17064 0.86687 0.82543 0.75995 1.90816 1.46001 1.56209 1.52332 1.45878 1.09711 1.05900 1.73947 1.21360 0.81451 0.94680 1.00911 1.20739 0.97671 0.90979 0.97254 1.21715 0.98810 1.01793 0.95751 1.21717 0.98793 1.01799 0.95764 1.18970 0.90670 0.95565 0.94542 1.21621 0.92539 0.92241 1.48585 0.90774 1.25943 0.95537 1.03226 0.95509 1.70126 0.97976 1.37246 1.52671 0.85495 0.78759 0.80183 0.77203 1.17891 1.21160 1.21149 1.83678 0.93998 1.09987 1.64911 0.87247 0.87223 0.88311 0.79897 0.75347 0.92850 0.92861 0.91531 0.92145 0.94188 0.94191 0.92143 0.91536 0.99400 0.99406 0.93198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.46 71.24 0.75 0.21 16 2 C 0.06 0.99 7.39 88.46 0.65 1.64 16 3 N -0.51 -10.87 10.51 -190.29 -2.00 -12.87 16 4 C 0.12 2.90 11.09 84.23 0.93 3.83 16 5 C -0.32 -7.90 6.49 23.88 0.15 -7.75 16 6 C 0.59 18.41 7.79 86.45 0.67 19.08 16 7 O -0.57 -22.44 16.87 -4.31 -0.07 -22.51 16 8 N -0.70 -20.27 4.95 -467.09 -2.31 -22.58 16 9 C 0.14 4.98 4.56 86.38 0.39 5.37 16 10 C -0.07 -2.45 0.54 -52.18 -0.03 -2.48 16 11 C -0.12 -4.05 8.05 71.98 0.58 -3.47 16 12 C -0.12 -4.05 8.05 71.98 0.58 -3.47 16 13 C 0.04 2.01 4.04 29.85 0.12 2.13 16 14 C -0.51 -26.96 7.65 25.60 0.20 -26.76 16 15 H 0.07 3.64 5.68 -2.91 -0.02 3.62 16 16 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 17 N -0.94 -56.70 13.29 21.45 0.28 -56.42 16 18 Si 0.96 43.06 29.54 68.60 2.03 45.09 16 19 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 20 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 21 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 22 S 0.22 3.39 22.31 -56.49 -1.26 2.13 16 23 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 24 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 25 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 26 H 0.18 4.35 8.06 -2.91 -0.02 4.33 16 27 H 0.41 9.47 5.35 -92.70 -0.50 8.97 16 28 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.07 1.66 6.86 -2.39 -0.02 1.64 16 31 H 0.06 2.11 6.62 -2.39 -0.02 2.09 16 32 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.06 2.11 6.62 -2.39 -0.02 2.09 16 35 H 0.07 1.65 6.86 -2.39 -0.02 1.64 16 36 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 37 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 38 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -70.47 327.96 2.70 -67.76 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 0.58 Total: 10.90 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: 5.46 Total: -11.51 kcal Atomic # 7 Polarization: -87.83 SS G_CDS: -4.03 Total: -91.86 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.07 Total: -22.51 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Atomic # 16 Polarization: 3.39 SS G_CDS: -1.26 Total: 2.13 kcal Total: -70.47 2.70 -67.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359760702.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.072 kcal (2) G-P(sol) polarization free energy of solvation -70.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds