Wall clock time and date at job start Tue Mar 31 2020 05:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50702 * 109.47299 * 2 1 4 4 N 1.29030 * 124.91643 * 89.99705 * 3 2 1 5 5 C 1.31787 * 117.12183 * 180.02562 * 4 3 2 6 6 C 1.50698 * 122.74522 * 179.97438 * 5 4 3 7 7 C 1.53006 * 109.47184 * 305.02118 * 6 5 4 8 8 N 1.46496 * 109.46995 * 180.02562 * 7 6 5 9 9 C 1.34775 * 119.99642 * 180.02562 * 8 7 6 10 10 O 1.21279 * 120.00300 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.99773 * 180.02562 * 9 8 7 12 12 C 1.53006 * 109.47126 * 179.97438 * 11 9 8 13 13 C 1.50698 * 109.47184 * 179.97438 * 12 11 9 14 14 H 1.08005 * 119.99819 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00046 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00192 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99979 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47170 * 90.00336 * 17 15 13 19 19 H 1.48502 * 109.47245 * 210.00175 * 17 15 13 20 20 H 1.48501 * 109.47507 * 330.00196 * 17 15 13 21 21 C 1.33639 * 114.50160 * 0.23271 * 5 4 3 22 22 S 1.70977 * 124.91464 * 270.00148 * 3 2 1 23 23 H 1.08999 * 109.47384 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47362 * 299.99788 * 1 2 3 25 25 H 1.09002 * 109.47478 * 60.00091 * 1 2 3 26 26 H 1.08994 * 109.47496 * 239.99933 * 2 1 3 27 27 H 1.09004 * 109.46997 * 119.99712 * 2 1 3 28 28 H 1.09001 * 109.46665 * 185.02507 * 6 5 4 29 29 H 1.08993 * 109.47304 * 65.02063 * 6 5 4 30 30 H 1.09001 * 109.46801 * 300.00442 * 7 6 5 31 31 H 1.09001 * 109.46998 * 60.00038 * 7 6 5 32 32 H 0.96998 * 120.00192 * 359.97438 * 8 7 6 33 33 H 1.09001 * 109.47354 * 299.99360 * 11 9 8 34 34 H 1.09001 * 109.46980 * 59.99839 * 11 9 8 35 35 H 1.08988 * 109.47037 * 300.00287 * 12 11 9 36 36 H 1.09001 * 109.47002 * 60.00244 * 12 11 9 37 37 H 0.96996 * 120.00505 * 180.02562 * 16 15 13 38 38 H 1.08000 * 126.03771 * 179.76559 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2784 2.1171 1.0580 5 6 2.7132 3.3483 0.8793 6 6 3.0391 4.2720 2.0245 7 6 1.8258 4.3848 2.9499 8 7 2.1425 5.2832 4.0629 9 6 1.2174 5.5342 5.0103 10 8 0.1227 5.0167 4.9413 11 6 1.5429 6.4589 6.1550 12 6 0.3297 6.5716 7.0804 13 6 0.6554 7.4958 8.2254 14 1 1.6301 7.9570 8.2866 15 6 -0.2913 7.7533 9.1941 16 7 -1.4783 7.1921 9.1193 17 14 0.1122 8.8994 10.6129 18 1 -0.2485 10.2915 10.2427 19 1 -0.6595 8.4910 11.8141 20 1 1.5654 8.8270 10.9100 21 6 2.8363 3.7123 -0.4007 22 16 2.3585 2.3434 -1.4020 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8932 -0.5138 0.8900 28 1 3.2920 5.2582 1.6352 29 1 3.8861 3.8736 2.5829 30 1 0.9788 4.7831 2.3915 31 1 1.5729 3.3986 3.3392 32 1 3.0181 5.6968 4.1183 33 1 2.3905 6.0616 6.7134 34 1 1.7948 7.4451 5.7650 35 1 -0.5176 6.9691 6.5219 36 1 0.0774 5.5855 7.4704 37 1 -2.1444 7.3736 9.8006 38 1 3.1714 4.6747 -0.7582 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360149792.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:52 Heat of formation + Delta-G solvation = -21.217487 kcal Electronic energy + Delta-G solvation = -18620.512227 eV Core-core repulsion = 15588.844735 eV Total energy + Delta-G solvation = -3031.667492 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.30575 -38.99829 -35.46095 -34.18378 -33.39962 -31.57211 -30.74121 -28.86922 -25.99106 -25.53746 -23.64085 -21.90631 -21.34851 -20.06568 -19.54342 -17.80633 -16.77454 -16.09175 -15.70547 -15.48873 -15.21983 -14.89650 -14.70578 -14.40289 -14.10206 -13.74556 -13.32764 -13.05765 -12.72480 -12.36141 -12.14514 -12.01943 -11.94573 -11.70844 -11.47635 -11.28135 -11.11455 -10.89831 -10.56996 -9.91076 -9.88056 -9.68982 -9.62015 -9.14423 -9.03844 -8.91581 -8.70655 -8.28678 -5.92779 -3.97112 0.41476 1.06305 1.43083 2.48674 3.33727 3.35518 3.41164 3.43893 3.57463 3.76310 4.49261 4.51472 4.73199 4.80647 4.84886 4.88249 4.98462 5.18283 5.31211 5.35915 5.41981 5.46533 5.60283 5.63523 5.81620 5.90665 5.95034 6.12337 6.28436 6.29899 6.78376 6.94694 7.48865 7.78181 7.91106 7.95782 8.11457 8.42628 8.85748 9.11899 9.66170 11.18252 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.037338 B = 0.002463 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.731465 B =11364.534424 C =11889.073777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.048 4.048 3 C 0.058 3.942 4 N -0.464 5.464 5 C 0.079 3.921 6 C -0.055 4.055 7 C 0.128 3.872 8 N -0.746 5.746 9 C 0.509 3.491 10 O -0.534 6.534 11 C -0.129 4.129 12 C 0.036 3.964 13 C -0.526 4.526 14 H 0.056 0.944 15 C 0.057 3.943 16 N -0.890 5.890 17 Si 0.893 3.107 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.258 4.258 22 S 0.109 5.891 23 H 0.068 0.932 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.085 0.915 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.396 0.604 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.023 0.977 36 H 0.023 0.977 37 H 0.261 0.739 38 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.423 -11.564 -24.048 29.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.089 4.089 3 C -0.221 4.221 4 N -0.178 5.178 5 C -0.053 4.053 6 C -0.095 4.095 7 C 0.004 3.996 8 N -0.400 5.400 9 C 0.297 3.703 10 O -0.409 6.409 11 C -0.169 4.169 12 C -0.001 4.001 13 C -0.565 4.565 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.529 5.529 17 Si 0.721 3.279 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.397 4.397 22 S 0.364 5.636 23 H 0.087 0.913 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.103 0.897 27 H 0.114 0.886 28 H 0.104 0.896 29 H 0.106 0.894 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.230 0.770 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.070 0.930 38 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 10.282 -12.393 -24.576 29.382 hybrid contribution 0.843 1.483 1.387 2.199 sum 11.125 -10.910 -23.188 27.937 Atomic orbital electron populations 1.21783 0.93230 1.02740 1.02966 1.20251 0.96971 0.87390 1.04278 1.27131 1.02417 1.01845 0.90727 1.66074 1.14449 1.05776 1.31533 1.20064 1.00145 0.91236 0.93903 1.20380 0.99069 0.97128 0.92956 1.21096 0.96012 0.95188 0.87347 1.46190 1.17499 1.50137 1.26204 1.21555 0.83917 0.81799 0.83028 1.90672 1.22898 1.51049 1.76314 1.21861 1.03675 0.97106 0.94298 1.18901 0.90974 0.97738 0.92518 1.21231 0.99246 1.27825 1.08168 0.92606 1.25032 0.95075 0.96202 0.98142 1.69999 1.04623 1.43407 1.34840 0.86589 0.78306 0.81026 0.81998 1.20699 1.21234 1.19901 1.26820 1.12869 1.04367 0.95682 1.83934 1.60810 1.05784 1.13076 0.91257 0.91580 0.92405 0.89691 0.88606 0.89559 0.89371 0.92094 0.90870 0.77014 0.90245 0.90282 0.95847 0.95809 0.92967 0.80493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.89 37.15 0.37 -0.67 16 2 C -0.05 -0.34 6.52 -27.89 -0.18 -0.52 16 3 C 0.06 0.56 6.64 -13.45 -0.09 0.47 16 4 N -0.46 -5.60 10.34 -8.05 -0.08 -5.69 16 5 C 0.08 0.85 6.08 -84.22 -0.51 0.34 16 6 C -0.05 -0.54 5.82 -27.88 -0.16 -0.70 16 7 C 0.13 1.77 5.58 -4.04 -0.02 1.74 16 8 N -0.75 -10.91 5.56 -60.29 -0.33 -11.24 16 9 C 0.51 10.23 7.83 -10.98 -0.09 10.15 16 10 O -0.53 -13.29 15.98 5.56 0.09 -13.20 16 11 C -0.13 -2.69 5.64 -27.88 -0.16 -2.85 16 12 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 13 C -0.53 -15.19 9.11 -34.44 -0.31 -15.51 16 14 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -27.89 13.29 55.43 0.74 -27.16 16 17 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 C -0.26 -2.28 11.07 29.12 0.32 -1.96 16 22 S 0.11 0.87 23.18 -107.50 -2.49 -1.63 16 23 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 24 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.09 0.65 8.03 -51.93 -0.42 0.24 16 29 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.07 1.18 8.08 -51.93 -0.42 0.76 16 32 H 0.40 4.35 8.47 -40.82 -0.35 4.00 16 33 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 34 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 35 H 0.02 0.70 8.10 -51.94 -0.42 0.28 16 36 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 37 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 38 H 0.18 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 341.26 15.07 5.14 5.14 Total: -1.00 -36.12 341.26 -8.81 -44.92 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -5.79 Total: -1.04 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -1.05 Total: -7.04 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: 0.32 Total: -44.08 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.09 Total: -13.20 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: 0.87 SS G_CDS: -2.49 Total: -1.63 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -36.12 -8.81 -44.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360149792.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.707 kcal (2) G-P(sol) polarization free energy of solvation -36.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds