Wall clock time and date at job start Tue Mar 31 2020 05:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29024 * 124.91602 * 2 1 4 4 C 1.31789 * 117.12247 * 180.02562 * 3 2 1 5 5 C 1.50696 * 122.74565 * 180.02562 * 4 3 2 6 6 C 1.33634 * 114.50028 * 359.97438 * 4 3 2 7 7 C 1.50703 * 126.03727 * 180.02562 * 6 4 3 8 8 C 1.53000 * 109.46912 * 90.00380 * 7 6 4 9 9 N 1.46499 * 109.46840 * 180.02562 * 8 7 6 10 10 C 1.34779 * 119.99872 * 179.97438 * 9 8 7 11 11 O 1.21273 * 120.00093 * 359.97438 * 10 9 8 12 12 C 1.50703 * 119.99944 * 179.97438 * 10 9 8 13 13 C 1.52997 * 109.47084 * 179.97438 * 12 10 9 14 14 C 1.50703 * 109.47084 * 180.02562 * 13 12 10 15 15 H 1.07995 * 120.00280 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99788 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00327 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99600 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47356 * 60.00144 * 18 16 14 20 20 H 1.48508 * 109.46668 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.46969 * 299.99834 * 18 16 14 22 22 S 1.70977 * 124.91631 * 180.31279 * 2 1 3 23 23 H 1.09002 * 109.46696 * 89.97553 * 1 2 3 24 24 H 1.08997 * 109.47329 * 209.97410 * 1 2 3 25 25 H 1.09000 * 109.47027 * 329.97662 * 1 2 3 26 26 H 1.09004 * 109.47140 * 269.99506 * 5 4 3 27 27 H 1.08996 * 109.47927 * 29.99567 * 5 4 3 28 28 H 1.09007 * 109.46927 * 149.99687 * 5 4 3 29 29 H 1.09002 * 109.47152 * 330.00152 * 7 6 4 30 30 H 1.09001 * 109.46980 * 210.00253 * 7 6 4 31 31 H 1.09001 * 109.47194 * 299.99742 * 8 7 6 32 32 H 1.08992 * 109.47399 * 59.99914 * 8 7 6 33 33 H 0.97005 * 120.00448 * 359.97438 * 9 8 7 34 34 H 1.08998 * 109.47224 * 300.00395 * 12 10 9 35 35 H 1.09002 * 109.47152 * 59.99840 * 12 10 9 36 36 H 1.09001 * 109.47375 * 299.99958 * 13 12 10 37 37 H 1.09002 * 109.47045 * 60.00033 * 13 12 10 38 38 H 0.97000 * 120.00354 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8793 -0.0005 5 6 4.5307 2.0245 0.0000 6 6 3.9354 -0.4007 -0.0004 7 6 5.3575 -0.8995 -0.0004 8 6 5.8386 -1.0683 1.4421 9 7 7.2212 -1.5527 1.4421 10 6 7.8573 -1.7751 2.6094 11 8 7.2853 -1.5739 3.6596 12 6 9.2794 -2.2739 2.6094 13 6 9.7611 -2.4414 4.0519 14 6 11.1834 -2.9396 4.0519 15 1 11.6929 -3.1185 3.1167 16 6 11.8341 -3.1671 5.2460 17 7 11.2135 -2.9498 6.3849 18 14 13.5974 -3.7840 5.2460 19 1 14.4650 -2.8031 4.5458 20 1 14.0644 -3.9478 6.6462 21 1 13.6641 -5.0920 4.5462 22 16 2.4857 -1.4020 -0.0077 23 1 -0.3633 0.0004 -1.0277 24 1 -0.3634 -0.8902 0.5134 25 1 -0.3633 0.8898 0.5142 26 1 4.7666 2.3013 -1.0276 27 1 4.0908 2.8788 0.5144 28 1 5.4434 1.7218 0.5134 29 1 5.9949 -0.1800 -0.5143 30 1 5.4057 -1.8596 -0.5142 31 1 5.7904 -0.1082 1.9559 32 1 5.2012 -1.7878 1.9559 33 1 7.6790 -1.7133 0.6021 34 1 9.3276 -3.2342 2.0960 35 1 9.9168 -1.5546 2.0951 36 1 9.7130 -1.4809 4.5649 37 1 9.1238 -3.1605 4.5665 38 1 11.6714 -3.1095 7.2250 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360182973.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:31 Heat of formation + Delta-G solvation = -22.286601 kcal Electronic energy + Delta-G solvation = -18717.263999 eV Core-core repulsion = 15685.550146 eV Total energy + Delta-G solvation = -3031.713853 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.26753 -39.13107 -35.75934 -33.55459 -33.43417 -31.40393 -30.62500 -29.44576 -27.00967 -25.39537 -23.23672 -22.78797 -21.42421 -19.83884 -18.88234 -18.22807 -16.85732 -16.02180 -15.68525 -15.52714 -15.22772 -14.95650 -14.41980 -14.16830 -13.78411 -13.64425 -13.42310 -13.10638 -12.76263 -12.51950 -12.51540 -12.26236 -12.11632 -12.03730 -11.75857 -11.17227 -11.15828 -10.90291 -10.61741 -9.94778 -9.89158 -9.66332 -9.51611 -9.19069 -9.03521 -8.82801 -8.79593 -8.31216 -5.95299 -3.99913 0.40445 1.05132 1.46856 2.48910 3.25512 3.34784 3.39117 3.40667 3.49842 3.79340 4.47640 4.60634 4.65420 4.69871 4.79228 4.99739 5.05591 5.08848 5.25340 5.36356 5.39405 5.44569 5.52604 5.55844 5.66301 5.78918 5.92633 6.06878 6.23053 6.24439 6.67405 6.89684 7.48780 7.74633 7.86427 7.86982 8.08002 8.39190 8.77498 9.08607 9.63505 11.15621 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.044036 B = 0.002499 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.691112 B =11201.930038 C =11325.124903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.044 3.956 3 N -0.471 5.471 4 C 0.070 3.930 5 C -0.081 4.081 6 C -0.220 4.220 7 C -0.051 4.051 8 C 0.125 3.875 9 N -0.746 5.746 10 C 0.509 3.491 11 O -0.533 6.533 12 C -0.129 4.129 13 C 0.037 3.963 14 C -0.528 4.528 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.890 5.890 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 S 0.122 5.878 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.089 0.911 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.398 0.602 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.023 0.977 37 H 0.023 0.977 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.196 5.494 -18.404 27.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.234 4.234 3 N -0.187 5.187 4 C -0.062 4.062 5 C -0.141 4.141 6 C -0.342 4.342 7 C -0.091 4.091 8 C 0.000 4.000 9 N -0.401 5.401 10 C 0.298 3.702 11 O -0.408 6.408 12 C -0.169 4.169 13 C -0.001 4.001 14 C -0.566 4.566 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.528 5.528 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.203 1.203 22 S 0.378 5.622 23 H 0.104 0.896 24 H 0.100 0.900 25 H 0.107 0.893 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.111 0.889 30 H 0.102 0.898 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.231 0.769 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.102 5.059 -17.413 27.072 hybrid contribution 1.650 0.250 -0.368 1.709 sum -18.452 5.309 -17.781 26.169 Atomic orbital electron populations 1.20443 0.85157 1.04311 1.03818 1.26943 1.01717 0.91157 1.03591 1.66149 1.04497 1.31706 1.16328 1.20198 0.90203 0.94098 1.01664 1.20410 0.96067 0.94676 1.02925 1.25433 0.99473 0.95625 1.13636 1.20208 0.88936 1.02344 0.97648 1.21202 0.83584 1.00339 0.94882 1.46191 1.13961 1.70471 1.09431 1.21588 0.89740 0.76268 0.82637 1.90676 1.68261 1.50482 1.31394 1.21866 0.89546 1.00906 1.04619 1.18899 0.95278 0.98222 0.87696 1.21186 0.98121 1.44977 0.92340 0.92643 1.25032 0.98072 0.95650 0.95657 1.69985 1.37063 1.48498 0.97294 0.86646 0.84949 0.79317 0.76970 1.20245 1.21292 1.20257 1.84014 0.97491 1.12107 1.68567 0.89630 0.90034 0.89253 0.90605 0.90475 0.90326 0.88924 0.89840 0.91477 0.91717 0.76878 0.90220 0.90199 0.95829 0.95837 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 10.46 36.01 0.38 -0.09 16 2 C 0.04 0.42 7.39 -13.46 -0.10 0.32 16 3 N -0.47 -5.54 10.53 -8.06 -0.08 -5.62 16 4 C 0.07 0.77 6.74 -84.23 -0.57 0.20 16 5 C -0.08 -0.72 9.82 36.00 0.35 -0.37 16 6 C -0.22 -2.25 5.84 -35.92 -0.21 -2.46 16 7 C -0.05 -0.45 5.26 -27.88 -0.15 -0.60 16 8 C 0.12 1.54 5.66 -4.04 -0.02 1.52 16 9 N -0.75 -10.09 5.56 -60.30 -0.33 -10.43 16 10 C 0.51 9.77 7.83 -10.98 -0.09 9.68 16 11 O -0.53 -12.76 15.98 5.56 0.09 -12.67 16 12 C -0.13 -2.60 5.64 -27.88 -0.16 -2.76 16 13 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 14 C -0.53 -15.01 9.11 -34.44 -0.31 -15.33 16 15 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -27.59 13.29 55.43 0.74 -26.85 16 18 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 S 0.12 1.12 23.18 -107.50 -2.49 -1.37 16 23 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.08 0.66 7.18 -51.92 -0.37 0.29 16 29 H 0.09 0.68 7.43 -51.93 -0.39 0.30 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.92 7.98 -51.93 -0.41 0.50 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.40 3.98 8.47 -40.82 -0.35 3.64 16 34 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 37 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 339.45 15.07 5.12 5.12 Total: -1.00 -35.80 339.45 -8.79 -44.59 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -5.71 Total: -2.03 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -1.09 Total: -7.42 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 0.32 Total: -42.90 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: 0.09 Total: -12.67 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.49 Total: -1.37 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.80 -8.79 -44.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360182973.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.304 kcal (2) G-P(sol) polarization free energy of solvation -35.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds