Wall clock time and date at job start Tue Mar 31 2020 05:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47272 * 2 1 4 4 C 1.50700 * 109.47249 * 180.02562 * 3 2 1 5 5 N 1.28920 * 124.84245 * 89.97868 * 4 3 2 6 6 C 1.31869 * 117.19356 * 179.97438 * 5 4 3 7 7 C 1.50693 * 122.84730 * 180.02562 * 6 5 4 8 8 C 1.34361 * 114.30075 * 359.97438 * 6 5 4 9 9 N 1.39796 * 126.06580 * 179.97438 * 8 6 5 10 10 C 1.34776 * 119.99863 * 180.02562 * 9 8 6 11 11 O 1.21312 * 119.99956 * 0.02562 * 10 9 8 12 12 C 1.50698 * 120.00035 * 179.97438 * 10 9 8 13 13 C 1.53006 * 109.47184 * 180.02562 * 12 10 9 14 14 C 1.50698 * 109.47184 * 180.02562 * 13 12 10 15 15 H 1.08005 * 119.99819 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00046 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99944 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99979 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47046 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46873 * 120.00118 * 18 16 14 21 21 H 1.48497 * 109.47510 * 240.00153 * 18 16 14 22 22 S 1.70950 * 124.84264 * 270.28784 * 4 3 2 23 23 H 1.09002 * 109.47145 * 299.99297 * 1 2 3 24 24 H 1.08997 * 109.47650 * 59.99771 * 1 2 3 25 25 H 1.08999 * 109.46928 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46824 * 240.00286 * 2 1 3 27 27 H 1.08997 * 109.47650 * 120.00229 * 2 1 3 28 28 H 1.09004 * 109.46963 * 60.00371 * 3 2 1 29 29 H 1.08999 * 109.47475 * 300.00565 * 3 2 1 30 30 H 1.09001 * 109.46981 * 269.97602 * 7 6 5 31 31 H 1.09001 * 109.47400 * 29.97465 * 7 6 5 32 32 H 1.09007 * 109.46988 * 149.97911 * 7 6 5 33 33 H 0.96998 * 120.00176 * 0.02562 * 9 8 6 34 34 H 1.09001 * 109.46665 * 60.00498 * 12 10 9 35 35 H 1.08993 * 109.47304 * 300.00054 * 12 10 9 36 36 H 1.09001 * 109.46801 * 300.00442 * 13 12 10 37 37 H 1.09001 * 109.46998 * 60.00038 * 13 12 10 38 38 H 0.96997 * 119.99752 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 7 4.2831 1.4422 -1.0590 6 6 5.5901 1.4428 -0.8841 7 6 6.5682 1.4431 -2.0304 8 6 5.9757 1.4441 0.4030 9 7 7.2944 1.4444 0.8672 10 6 7.5425 1.4452 2.1919 11 8 6.6215 1.4452 2.9815 12 6 8.9640 1.4450 2.6922 13 6 8.9661 1.4454 4.2223 14 6 10.3876 1.4458 4.7226 15 1 11.2075 1.4462 4.0196 16 6 10.6415 1.4468 6.0778 17 7 9.6430 1.4469 6.9338 18 14 12.4035 1.4480 6.6980 19 1 13.3352 1.4484 5.5417 20 1 12.6373 2.6612 7.5220 21 1 12.6386 0.2362 7.5234 22 16 4.5243 1.4352 1.4020 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 1.6767 1.9563 0.8901 29 1 1.6766 1.9564 -0.8899 30 1 6.8048 0.4155 -2.3065 31 1 6.1267 1.9564 -2.8847 32 1 7.4808 1.9577 -1.7292 33 1 8.0307 1.4440 0.2358 34 1 9.4776 2.3346 2.3276 35 1 9.4769 0.5546 2.3288 36 1 8.4530 2.3356 4.5860 37 1 8.4526 0.5557 4.5866 38 1 9.8216 1.4472 7.8872 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360648366.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:01 Heat of formation + Delta-G solvation = -25.091093 kcal Electronic energy + Delta-G solvation = -19067.566465 eV Core-core repulsion = 16035.731000 eV Total energy + Delta-G solvation = -3031.835465 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.23854 -39.28460 -35.69831 -34.48797 -33.63093 -31.51235 -30.91642 -28.31919 -27.19593 -25.40361 -23.22931 -22.14074 -21.40892 -20.39792 -19.59266 -17.86979 -16.75651 -16.63434 -15.75343 -15.62591 -15.07678 -14.70346 -14.50916 -14.26763 -13.69394 -13.55027 -13.45791 -12.80813 -12.66102 -12.39007 -12.30310 -12.19222 -11.78527 -11.47781 -11.34206 -11.15450 -11.02721 -10.90897 -10.83337 -10.67220 -10.12791 -10.01325 -9.57831 -9.22067 -9.18907 -8.84148 -8.41689 -7.87436 -6.04995 -4.10113 0.83762 1.26247 1.98347 2.61872 3.08630 3.12901 3.27490 3.35213 3.38010 4.13707 4.40348 4.77545 4.85037 4.87748 5.00611 5.23756 5.29804 5.30524 5.35574 5.47967 5.51944 5.56180 5.60321 5.77596 5.88500 5.97767 5.98864 5.99698 6.08126 6.10890 6.42678 6.65455 7.31112 7.63045 7.70359 7.89221 7.94705 8.16918 8.33371 8.97360 9.54285 11.05895 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.029437 B = 0.003255 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.971197 B = 8601.311279 C = 9413.032351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.034 4.034 4 C -0.027 4.027 5 N -0.450 5.450 6 C -0.006 4.006 7 C -0.069 4.069 8 C 0.008 3.992 9 N -0.639 5.639 10 C 0.500 3.500 11 O -0.498 6.498 12 C -0.123 4.123 13 C 0.036 3.964 14 C -0.530 4.530 15 H 0.057 0.943 16 C 0.059 3.941 17 N -0.888 5.888 18 Si 0.894 3.106 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.283 1.283 22 S 0.239 5.761 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.416 0.584 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.026 0.974 37 H 0.026 0.974 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.110 -0.839 -16.813 20.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.075 4.075 4 C -0.305 4.305 5 N -0.164 5.164 6 C -0.142 4.142 7 C -0.128 4.128 8 C -0.211 4.211 9 N -0.285 5.285 10 C 0.290 3.710 11 O -0.372 6.372 12 C -0.163 4.163 13 C -0.001 4.001 14 C -0.568 4.568 15 H 0.076 0.924 16 C -0.143 4.143 17 N -0.526 5.526 18 Si 0.722 3.278 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.209 1.209 22 S 0.491 5.509 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.100 0.900 29 H 0.106 0.894 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.254 0.746 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.044 0.956 37 H 0.044 0.956 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.199 -0.837 -15.409 20.306 hybrid contribution 2.030 0.018 -0.667 2.137 sum -11.169 -0.819 -16.076 19.592 Atomic orbital electron populations 1.21763 0.95253 1.01874 1.01945 1.21534 0.95910 0.95570 1.02811 1.20148 0.85421 0.98279 1.03664 1.27108 1.01601 1.07830 0.93930 1.66039 1.03330 1.14829 1.32221 1.19922 0.90940 1.11064 0.92235 1.20173 0.95403 1.02384 0.94872 1.23617 0.91642 1.09779 0.96058 1.43451 1.03749 1.72394 1.08954 1.22221 0.94555 0.74206 0.80053 1.90635 1.46222 1.46608 1.53730 1.21914 0.88104 1.03243 1.03071 1.18948 0.97262 0.98880 0.85046 1.21198 0.91967 1.51794 0.91819 0.92428 1.25023 0.97153 0.95128 0.97023 1.69999 1.30650 1.49906 1.02081 0.86513 0.84756 0.77663 0.78899 1.19720 1.20952 1.20946 1.85053 0.92191 1.67865 1.05744 0.92512 0.92581 0.92517 0.91461 0.91654 0.90034 0.89449 0.91187 0.90652 0.91632 0.74567 0.89417 0.89411 0.95594 0.95588 0.92880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 37.16 0.37 -0.72 16 2 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 3 C -0.03 -0.35 5.79 -27.88 -0.16 -0.51 16 4 C -0.03 -0.36 6.63 -13.50 -0.09 -0.45 16 5 N -0.45 -6.55 10.53 -7.91 -0.08 -6.64 16 6 C -0.01 -0.08 6.77 -83.95 -0.57 -0.65 16 7 C -0.07 -0.70 10.07 36.00 0.36 -0.34 16 8 C 0.01 0.12 7.18 -15.28 -0.11 0.01 16 9 N -0.64 -9.16 5.40 -10.60 -0.06 -9.22 16 10 C 0.50 9.08 7.80 -10.99 -0.09 9.00 16 11 O -0.50 -10.81 13.62 5.53 0.08 -10.74 16 12 C -0.12 -2.31 5.64 -27.88 -0.16 -2.47 16 13 C 0.04 0.92 4.26 -27.88 -0.12 0.81 16 14 C -0.53 -14.47 9.11 -34.44 -0.31 -14.78 16 15 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 18 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 19 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 S 0.24 3.66 20.42 -107.50 -2.20 1.46 16 23 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.55 7.21 -51.92 -0.37 0.17 16 33 H 0.42 4.44 7.62 -40.82 -0.31 4.13 16 34 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 35 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 36 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 37 H 0.03 0.73 8.10 -51.93 -0.42 0.30 16 38 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 335.29 15.07 5.05 5.05 Total: -1.00 -33.04 335.29 -8.34 -41.38 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -5.72 Total: -1.70 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -1.13 Total: -9.79 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: 0.60 Total: -41.80 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.08 Total: -10.74 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 3.66 SS G_CDS: -2.20 Total: 1.46 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.04 -8.34 -41.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360648366.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.287 kcal (2) G-P(sol) polarization free energy of solvation -33.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds