Wall clock time and date at job start Tue Mar 31 2020 05:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21502 * 119.99375 * 2 1 4 4 C 1.41018 * 120.00137 * 179.72670 * 2 1 3 5 5 N 1.37769 * 122.48388 * 359.70840 * 4 2 1 6 6 H 0.96999 * 122.68640 * 0.02746 * 5 4 2 7 7 C 1.35543 * 114.61707 * 179.81098 * 5 4 2 8 8 N 1.30738 * 125.27206 * 180.17120 * 7 5 4 9 9 C 1.46495 * 120.00144 * 180.28330 * 8 7 5 10 10 C 1.52999 * 109.47300 * 119.99980 * 9 8 7 11 11 C 1.52999 * 109.47078 * 299.99512 * 10 9 8 12 12 C 1.52999 * 109.47247 * 60.00085 * 10 9 8 13 13 C 1.50700 * 109.47016 * 179.97438 * 10 9 8 14 14 H 1.08004 * 120.00327 * 0.02562 * 13 10 9 15 15 C 1.37878 * 120.00264 * 179.97438 * 13 10 9 16 16 N 1.31522 * 119.99830 * 0.02562 * 15 13 10 17 17 Si 1.86794 * 120.00521 * 180.02562 * 15 13 10 18 18 H 1.48500 * 109.47269 * 59.99741 * 17 15 13 19 19 H 1.48498 * 109.47497 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46835 * 299.99903 * 17 15 13 21 21 S 1.75879 * 109.46028 * 0.43519 * 7 5 4 22 22 C 1.34149 * 122.48256 * 180.02562 * 4 2 1 23 23 C 1.50702 * 125.08643 * 359.93511 * 22 4 2 24 24 H 1.08999 * 109.47015 * 90.00170 * 1 2 3 25 25 H 1.09000 * 109.46646 * 209.99322 * 1 2 3 26 26 H 1.09000 * 109.47248 * 330.00040 * 1 2 3 27 27 H 1.09006 * 109.46897 * 240.00055 * 9 8 7 28 28 H 1.09001 * 109.47291 * 359.97438 * 9 8 7 29 29 H 1.08999 * 109.46940 * 60.00523 * 11 10 9 30 30 H 1.09003 * 109.47079 * 180.02562 * 11 10 9 31 31 H 1.09001 * 109.47311 * 300.00060 * 11 10 9 32 32 H 1.08999 * 109.47825 * 59.99870 * 12 10 9 33 33 H 1.08997 * 109.47104 * 180.02562 * 12 10 9 34 34 H 1.09006 * 109.46756 * 299.99687 * 12 10 9 35 35 H 0.96998 * 119.99968 * 180.02562 * 16 15 13 36 36 H 1.09004 * 109.46822 * 90.00604 * 23 22 4 37 37 H 1.08999 * 109.47389 * 209.99808 * 23 22 4 38 38 H 1.08995 * 109.47447 * 330.00325 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1145 1.0523 0.0000 4 6 2.2122 -1.2212 0.0058 5 7 1.5757 -2.4430 0.0176 6 1 0.6097 -2.5304 0.0221 7 6 2.4077 -3.5131 0.0177 8 7 2.0285 -4.7642 0.0245 9 6 3.0302 -5.8332 0.0300 10 6 2.8530 -6.6918 1.2839 11 6 3.0310 -5.8198 2.5284 12 6 1.4517 -7.3060 1.2876 13 6 3.8830 -7.7918 1.2892 14 1 4.5934 -7.8704 0.4795 15 6 3.9194 -8.6973 2.3284 16 7 3.0547 -8.6013 3.3147 17 14 5.1966 -10.0604 2.3354 18 1 6.5567 -9.4643 2.3312 19 1 5.0245 -10.8938 3.5523 20 1 5.0235 -10.9070 1.1277 21 16 4.0765 -2.9577 0.0148 22 6 3.5524 -1.2793 0.0066 23 6 4.4712 -0.0848 0.0001 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3632 -0.8901 0.5137 26 1 -0.3634 0.8900 0.5138 27 1 2.9035 -6.4545 -0.8567 28 1 4.0286 -5.3957 0.0270 29 1 2.2857 -5.0245 2.5244 30 1 2.9052 -6.4316 3.4218 31 1 4.0293 -5.3823 2.5258 32 1 1.3248 -7.9273 0.4010 33 1 1.3253 -7.9173 2.1811 34 1 0.7064 -6.5106 1.2836 35 1 3.0805 -9.2381 4.0460 36 1 4.6925 0.2089 1.0263 37 1 5.3984 -0.3423 -0.5119 38 1 3.9876 0.7429 -0.5185 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413399220.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:55 Heat of formation + Delta-G solvation = 7.661144 kcal Electronic energy + Delta-G solvation = -19992.098139 eV Core-core repulsion = 16961.682918 eV Total energy + Delta-G solvation = -3030.415221 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.74396 -38.41278 -36.57648 -33.98851 -32.37136 -31.17822 -30.25005 -27.23059 -25.63079 -25.39861 -25.03114 -23.95758 -20.93856 -19.40697 -18.66503 -17.74776 -17.12188 -15.99246 -15.80003 -15.20494 -15.02963 -14.76321 -14.26114 -14.00056 -13.43962 -13.30390 -12.91470 -12.84111 -12.65038 -12.51154 -12.36355 -12.13155 -11.37169 -11.33737 -11.16611 -10.78786 -10.68156 -10.31892 -10.16774 -10.10695 -9.83233 -9.48187 -9.40808 -9.16461 -8.95690 -8.49808 -8.29541 -7.04036 -5.93549 -4.05239 0.55372 1.43332 1.83526 2.24096 2.77593 2.92511 3.32205 3.36875 3.39616 3.98700 4.42869 4.61038 4.79825 5.06413 5.10392 5.16822 5.31660 5.44940 5.52360 5.61229 5.82442 5.99087 6.12224 6.41856 6.53997 6.62880 6.87907 7.08871 7.16258 7.16957 7.22101 7.32563 7.48071 7.71425 7.76571 8.11261 8.18623 8.28824 8.50024 8.95083 9.59842 11.06780 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.032553 B = 0.004134 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.920078 B = 6772.278630 C = 7225.977708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.412 3.588 3 O -0.449 6.449 4 C 0.011 3.989 5 N -0.619 5.619 6 H 0.422 0.578 7 C 0.337 3.663 8 N -0.523 5.523 9 C 0.079 3.921 10 C 0.077 3.923 11 C -0.127 4.127 12 C -0.120 4.120 13 C -0.510 4.510 14 H 0.053 0.947 15 C 0.067 3.933 16 N -0.884 5.884 17 Si 0.891 3.109 18 H -0.278 1.278 19 H -0.287 1.287 20 H -0.278 1.278 21 S 0.026 5.974 22 C -0.130 4.130 23 C -0.088 4.088 24 H 0.100 0.900 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.075 0.925 28 H 0.035 0.965 29 H 0.007 0.993 30 H 0.082 0.918 31 H 0.020 0.980 32 H 0.020 0.980 33 H 0.077 0.923 34 H 0.017 0.983 35 H 0.259 0.741 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.996 16.248 -6.318 17.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.290 3.710 3 O -0.326 6.326 4 C -0.102 4.102 5 N -0.249 5.249 6 H 0.262 0.738 7 C -0.051 4.051 8 N -0.252 5.252 9 C -0.050 4.050 10 C 0.076 3.924 11 C -0.185 4.185 12 C -0.178 4.178 13 C -0.549 4.549 14 H 0.072 0.928 15 C -0.134 4.134 16 N -0.522 5.522 17 Si 0.719 3.281 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 S 0.269 5.731 22 C -0.255 4.255 23 C -0.146 4.146 24 H 0.118 0.882 25 H 0.102 0.898 26 H 0.112 0.888 27 H 0.093 0.907 28 H 0.053 0.947 29 H 0.026 0.974 30 H 0.101 0.899 31 H 0.039 0.961 32 H 0.039 0.961 33 H 0.096 0.904 34 H 0.036 0.964 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.190 15.365 -6.135 16.689 hybrid contribution -0.275 -0.271 0.063 0.391 sum -2.464 15.094 -6.072 16.455 Atomic orbital electron populations 1.22268 0.93589 1.05168 1.04986 1.20208 0.91764 0.86442 0.72556 1.90582 1.71470 1.33175 1.37386 1.18255 0.92483 0.87792 1.11673 1.41277 1.09285 1.01075 1.73271 0.73782 1.24143 0.89503 0.90977 1.00459 1.71555 1.34695 0.95976 1.22948 1.22475 0.89488 0.91005 1.02057 1.18116 0.94638 0.91546 0.88135 1.21774 0.96576 0.97459 1.02680 1.21663 0.96062 0.98722 1.01366 1.21030 1.15301 1.11658 1.06912 0.92828 1.24873 0.95693 0.97433 0.95404 1.69831 1.35574 1.36541 1.10288 0.86677 0.82040 0.82043 0.77333 1.20329 1.21313 1.20322 1.85851 1.08419 0.96447 1.82374 1.24539 0.95341 1.00393 1.05240 1.20615 0.96952 0.93493 1.03543 0.88164 0.89844 0.88807 0.90697 0.94700 0.97362 0.89886 0.96072 0.96108 0.90410 0.96370 0.93038 0.90074 0.91142 0.88192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.37 9.90 36.01 0.36 -1.01 16 2 C 0.41 4.30 7.02 -33.25 -0.23 4.06 16 3 O -0.45 -5.52 14.46 5.36 0.08 -5.44 16 4 C 0.01 0.14 6.48 -85.58 -0.55 -0.42 16 5 N -0.62 -8.18 5.54 -12.05 -0.07 -8.25 16 6 H 0.42 4.58 7.36 -40.82 -0.30 4.28 16 7 C 0.34 5.70 8.32 -89.72 -0.75 4.95 16 8 N -0.52 -10.31 9.11 -61.53 -0.56 -10.87 16 9 C 0.08 1.73 5.17 -4.04 -0.02 1.71 16 10 C 0.08 1.91 0.57 -155.66 -0.09 1.82 16 11 C -0.13 -3.16 8.09 37.16 0.30 -2.86 16 12 C -0.12 -3.00 8.09 37.16 0.30 -2.70 16 13 C -0.51 -13.79 8.01 -34.44 -0.28 -14.07 16 14 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 15 C 0.07 1.83 5.15 -17.82 -0.09 1.73 16 16 N -0.88 -24.56 9.35 55.43 0.52 -24.05 16 17 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 S 0.03 0.41 21.34 -107.50 -2.29 -1.89 16 22 C -0.13 -1.70 6.51 -35.75 -0.23 -1.93 16 23 C -0.09 -0.94 9.53 36.01 0.34 -0.59 16 24 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.08 0.49 6.81 -51.93 -0.35 0.14 16 26 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.07 1.64 8.14 -51.93 -0.42 1.21 16 28 H 0.03 0.75 6.18 -51.93 -0.32 0.43 16 29 H 0.01 0.18 7.60 -51.93 -0.39 -0.22 16 30 H 0.08 2.25 6.07 -51.93 -0.32 1.94 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 2.10 6.07 -51.93 -0.32 1.79 16 34 H 0.02 0.42 7.60 -51.93 -0.39 0.02 16 35 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.10 1.07 5.80 -51.93 -0.30 0.77 16 LS Contribution 320.04 15.07 4.82 4.82 Total: -1.00 -29.84 320.04 -8.66 -38.50 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -5.20 Total: 0.44 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -0.94 Total: -9.31 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: -0.11 Total: -43.16 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: 0.08 Total: -5.44 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 0.41 SS G_CDS: -2.29 Total: -1.89 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.84 -8.66 -38.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413399220.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.161 kcal (2) G-P(sol) polarization free energy of solvation -29.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds