Wall clock time and date at job start Tue Mar 31 2020 05:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47017 * 2 1 4 4 C 1.50693 * 109.47207 * 239.99464 * 2 1 3 5 5 H 1.07996 * 120.00249 * 239.99952 * 4 2 1 6 6 C 1.37881 * 119.99947 * 60.00898 * 4 2 1 7 7 N 1.31508 * 119.99929 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00064 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47357 * 89.99389 * 8 6 4 10 10 H 1.48498 * 109.47135 * 209.99184 * 8 6 4 11 11 H 1.48500 * 109.47358 * 329.99313 * 8 6 4 12 12 C 1.53002 * 109.46610 * 119.99873 * 2 1 3 13 13 N 1.46903 * 109.47157 * 299.99912 * 12 2 1 14 14 C 1.39842 * 110.99746 * 180.02562 * 13 12 2 15 15 C 1.39123 * 120.08140 * 276.31202 * 14 13 12 16 16 F 1.35099 * 120.05498 * 359.97438 * 15 14 13 17 17 C 1.38241 * 119.88444 * 180.25577 * 15 14 13 18 18 C 1.38332 * 120.05106 * 359.73144 * 17 15 14 19 19 C 1.38227 * 120.16096 * 0.02562 * 18 17 15 20 20 C 1.38194 * 120.11426 * 359.97438 * 19 18 17 21 21 N 1.48012 * 120.02514 * 179.97438 * 20 19 18 22 22 O 1.21802 * 119.99799 * 143.06705 * 21 20 19 23 23 O 1.21798 * 120.00032 * 322.78788 * 21 20 19 24 24 H 1.08993 * 109.47497 * 300.00353 * 1 2 3 25 25 H 1.09002 * 109.47131 * 60.00485 * 1 2 3 26 26 H 1.09002 * 109.47507 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46738 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47296 * 299.99280 * 3 2 1 29 29 H 1.09000 * 109.47063 * 60.00134 * 3 2 1 30 30 H 0.96998 * 120.00563 * 180.02562 * 7 6 4 31 31 H 1.09004 * 109.46915 * 179.97438 * 12 2 1 32 32 H 1.08995 * 109.47514 * 60.00342 * 12 2 1 33 33 H 1.00900 * 110.99875 * 303.95681 * 13 12 2 34 34 H 1.08001 * 119.97286 * 179.74743 * 17 15 14 35 35 H 1.07998 * 119.91571 * 179.97438 * 18 17 15 36 36 H 1.08003 * 119.94275 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6532 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 0.9431 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.3450 -2.1617 -4.4122 10 1 2.4874 -0.1404 -5.1119 11 1 3.6310 -1.7567 -3.7118 12 6 2.0399 -0.7213 1.2493 13 7 1.5502 -0.0287 2.4487 14 6 1.9989 -0.6625 3.6117 15 6 1.3095 -1.7596 4.1183 16 9 0.2046 -2.2144 3.4879 17 6 1.7537 -2.3798 5.2712 18 6 2.8849 -1.9137 5.9167 19 6 3.5743 -0.8270 5.4123 20 6 3.1363 -0.2019 4.2603 21 7 3.8757 0.9619 3.7222 22 8 3.9872 1.1089 2.5182 23 8 4.3682 1.7754 4.4832 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 0.7085 1.1609 -3.4844 31 1 3.1299 -0.7217 1.2491 32 1 1.6766 -1.7489 1.2493 33 1 1.8196 0.9436 2.4402 34 1 1.2173 -3.2290 5.6680 35 1 3.2298 -2.3996 6.8174 36 1 4.4574 -0.4663 5.9189 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413403883.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:10 Heat of formation + Delta-G solvation = -15.045179 kcal Electronic energy + Delta-G solvation = -22898.071441 eV Core-core repulsion = 19300.458424 eV Total energy + Delta-G solvation = -3597.613017 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.94568 -42.22692 -39.54333 -37.19690 -36.30800 -34.30639 -31.83326 -31.19795 -29.10085 -26.53911 -25.57713 -25.31978 -24.47046 -22.71462 -22.21729 -19.42513 -18.74032 -18.62517 -17.84987 -17.03530 -16.55344 -16.34958 -15.81742 -15.68709 -15.14357 -14.54375 -14.27086 -13.67377 -13.37400 -12.87480 -12.66511 -12.63246 -12.22396 -12.02734 -11.52158 -11.32473 -11.10732 -11.03756 -10.98421 -10.78067 -10.62617 -10.22824 -10.08569 -9.91262 -9.51223 -9.38682 -9.04177 -8.70362 -8.31462 -8.16627 -5.92006 -4.02633 -0.14113 0.65049 1.06923 1.34326 2.91682 3.32502 3.39489 3.42354 3.69495 4.05374 4.26787 4.33499 4.46206 4.60435 4.81220 5.29242 5.34040 5.36775 5.50230 5.64452 5.99327 6.12931 6.17558 6.40708 6.60490 6.82509 7.00457 7.09192 7.24028 7.26070 7.39564 7.53829 7.66177 7.75243 7.79848 8.18889 8.28379 8.51031 8.96939 9.62131 11.08913 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.021195 B = 0.005520 C = 0.004888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.747252 B = 5071.603873 C = 5727.248648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.072 3.928 3 C -0.129 4.129 4 C -0.506 4.506 5 H 0.053 0.947 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.891 3.109 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.275 1.275 12 C 0.082 3.918 13 N -0.636 5.636 14 C 0.151 3.849 15 C 0.104 3.896 16 F -0.110 7.110 17 C -0.097 4.097 18 C -0.114 4.114 19 C -0.058 4.058 20 C -0.070 4.070 21 N 0.022 4.978 22 O -0.133 6.133 23 O -0.155 6.155 24 H 0.016 0.984 25 H 0.079 0.921 26 H 0.020 0.980 27 H 0.033 0.967 28 H 0.084 0.916 29 H 0.003 0.997 30 H 0.259 0.741 31 H 0.043 0.957 32 H 0.063 0.937 33 H 0.362 0.638 34 H 0.153 0.847 35 H 0.152 0.848 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.733 -5.041 17.121 18.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.072 3.928 3 C -0.187 4.187 4 C -0.545 4.545 5 H 0.071 0.929 6 C -0.134 4.134 7 N -0.521 5.521 8 Si 0.719 3.281 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.200 1.200 12 C -0.041 4.041 13 N -0.264 5.264 14 C 0.048 3.952 15 C 0.082 3.918 16 F -0.088 7.088 17 C -0.117 4.117 18 C -0.133 4.133 19 C -0.077 4.077 20 C -0.156 4.156 21 N 0.544 4.456 22 O -0.351 6.351 23 O -0.371 6.371 24 H 0.035 0.965 25 H 0.097 0.903 26 H 0.039 0.961 27 H 0.052 0.948 28 H 0.102 0.898 29 H 0.022 0.978 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.187 0.813 34 H 0.171 0.829 35 H 0.170 0.830 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.629 -5.779 17.102 18.126 hybrid contribution 1.118 0.079 -1.011 1.510 sum 2.747 -5.700 16.091 17.291 Atomic orbital electron populations 1.21707 0.97403 0.98784 1.00193 1.18124 0.93086 0.92490 0.89144 1.21809 0.98920 0.98186 0.99802 1.20988 1.31415 1.11965 0.90135 0.92868 1.24857 0.94941 0.94913 0.98685 1.69825 1.36605 1.22668 1.23048 0.86617 0.79177 0.79397 0.82898 1.20835 1.21246 1.20041 1.22502 0.97337 0.97396 0.86869 1.58154 1.59982 1.08080 1.00225 1.18881 0.89087 0.93143 0.94118 1.17147 0.86366 0.95190 0.93117 1.91597 1.48709 1.87341 1.81198 1.21486 0.96917 1.00020 0.93250 1.20854 0.95042 0.96288 1.01102 1.20867 1.00331 0.94542 0.92004 1.21435 0.97009 0.95278 1.01918 1.43520 0.99513 1.01353 1.01206 1.94698 1.62571 1.80917 0.96961 1.94518 1.48631 1.37601 1.56386 0.96515 0.90274 0.96050 0.94795 0.89759 0.97759 0.93083 0.93884 0.91882 0.81343 0.82914 0.82986 0.83327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.03 8.09 37.16 0.30 -2.73 16 2 C 0.07 1.76 0.57 -155.66 -0.09 1.67 16 3 C -0.13 -3.14 7.82 37.16 0.29 -2.85 16 4 C -0.51 -13.62 8.01 -34.44 -0.28 -13.90 16 5 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 6 C 0.07 1.82 5.15 -17.82 -0.09 1.73 16 7 N -0.88 -24.45 9.35 55.43 0.52 -23.93 16 8 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 C 0.08 1.75 4.02 -3.82 -0.02 1.74 16 13 N -0.64 -11.98 5.24 -58.28 -0.31 -12.28 16 14 C 0.15 2.38 5.30 -83.67 -0.44 1.94 16 15 C 0.10 1.42 7.29 -39.25 -0.29 1.13 16 16 F -0.11 -1.72 17.08 2.25 0.04 -1.68 16 17 C -0.10 -0.89 10.02 -39.55 -0.40 -1.29 16 18 C -0.11 -0.88 10.04 -39.55 -0.40 -1.28 16 19 C -0.06 -0.59 9.66 -39.60 -0.38 -0.98 16 20 C -0.07 -1.01 6.49 -79.76 -0.52 -1.53 16 21 N 0.02 0.37 4.12 34.05 0.14 0.51 16 22 O -0.13 -2.53 15.29 -29.46 -0.45 -2.98 16 23 O -0.15 -2.51 18.94 -29.46 -0.56 -3.07 16 24 H 0.02 0.37 7.60 -51.93 -0.39 -0.02 16 25 H 0.08 2.12 6.07 -51.93 -0.32 1.81 16 26 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.03 0.81 7.98 -51.93 -0.41 0.40 16 28 H 0.08 2.25 6.07 -51.93 -0.32 1.93 16 29 H 0.00 0.08 6.57 -51.93 -0.34 -0.26 16 30 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 31 H 0.04 0.93 7.04 -51.93 -0.37 0.57 16 32 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.36 7.02 4.74 -39.29 -0.19 6.84 16 34 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.15 0.61 8.06 -52.49 -0.42 0.18 16 36 H 0.15 1.23 8.01 -52.48 -0.42 0.81 16 LS Contribution 305.85 15.07 4.61 4.61 Total: -1.00 -29.12 305.85 -7.32 -36.44 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -3.98 Total: 2.59 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -2.30 Total: -16.34 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: 0.35 Total: -35.70 kcal Atomic # 8 Polarization: -5.04 SS G_CDS: -1.01 Total: -6.05 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.12 -7.32 -36.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413403883.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.394 kcal (2) G-P(sol) polarization free energy of solvation -29.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds