Wall clock time and date at job start Tue Mar 31 2020 05:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.50706 * 109.46783 * 239.99845 * 2 1 3 5 5 H 1.07996 * 119.99928 * 239.99923 * 4 2 1 6 6 C 1.37880 * 119.99611 * 60.00217 * 4 2 1 7 7 N 1.31511 * 120.00327 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99743 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46725 * 60.00093 * 8 6 4 10 10 H 1.48505 * 109.46988 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47116 * 300.00069 * 8 6 4 12 12 C 1.53000 * 109.47233 * 120.00458 * 2 1 3 13 13 N 1.46499 * 109.46840 * 299.99500 * 12 2 1 14 14 C 1.39846 * 120.00047 * 180.02562 * 13 12 2 15 15 C 1.38830 * 120.07727 * 359.72334 * 14 13 12 16 16 C 1.38163 * 119.94781 * 179.74254 * 15 14 13 17 17 C 1.38271 * 120.10581 * 0.51274 * 16 15 14 18 18 N 1.48013 * 119.91392 * 179.74108 * 17 16 15 19 19 O 1.21796 * 119.99800 * 180.02562 * 18 17 16 20 20 O 1.21804 * 120.00033 * 0.02931 * 18 17 16 21 21 C 1.38282 * 120.16675 * 359.76839 * 17 16 15 22 22 C 1.38274 * 120.04841 * 359.97218 * 21 17 16 23 23 F 1.35097 * 120.05680 * 179.97438 * 22 21 17 24 24 H 1.09000 * 109.46986 * 299.99746 * 1 2 3 25 25 H 1.08993 * 109.47662 * 59.99968 * 1 2 3 26 26 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47554 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47108 * 300.00289 * 3 2 1 29 29 H 1.09000 * 109.46870 * 60.00183 * 3 2 1 30 30 H 0.97000 * 120.00354 * 180.02562 * 7 6 4 31 31 H 1.09002 * 109.47398 * 59.99826 * 12 2 1 32 32 H 1.09001 * 109.47194 * 180.02562 * 12 2 1 33 33 H 0.97000 * 120.00420 * 0.02562 * 13 12 2 34 34 H 1.07997 * 120.02717 * 359.97438 * 15 14 13 35 35 H 1.08001 * 119.94180 * 180.26052 * 16 15 14 36 36 H 1.08005 * 119.97525 * 179.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.8277 -2.5198 -4.0082 10 1 1.8266 -0.4199 -5.2205 11 1 3.8072 -1.1191 -4.0079 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8901 -0.5082 3.7155 15 6 2.6838 -1.6399 3.8447 16 6 3.0208 -2.1063 5.1008 17 6 2.5601 -1.4538 6.2295 18 7 2.9190 -1.9604 7.5732 19 8 2.5136 -1.3871 8.5684 20 8 3.6197 -2.9505 7.6836 21 6 1.7644 -0.3295 6.1062 22 6 1.4275 0.1460 4.8523 23 9 0.6498 1.2441 4.7315 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9562 0.8900 30 1 0.7080 1.1609 -3.4844 31 1 1.6767 -1.7490 1.2492 32 1 3.1301 -0.7209 1.2494 33 1 0.9939 0.7578 2.3565 34 1 3.0406 -2.1532 2.9641 35 1 3.6417 -2.9842 5.2012 36 1 1.4059 0.1775 6.9899 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413409664.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:13 Heat of formation + Delta-G solvation = -31.603615 kcal Electronic energy + Delta-G solvation = -21753.684335 eV Core-core repulsion = 18155.353290 eV Total energy + Delta-G solvation = -3598.331045 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.03870 -42.02907 -39.58070 -37.24291 -36.44572 -34.51849 -31.69009 -31.08014 -29.79592 -26.51129 -25.95669 -25.68246 -24.68659 -23.04598 -21.96821 -19.51491 -19.05055 -18.57460 -17.84796 -17.42387 -16.64270 -16.37883 -15.98917 -15.87944 -14.98782 -14.48972 -14.17475 -14.16534 -13.83272 -13.22330 -12.80470 -12.75923 -12.52685 -11.85520 -11.79796 -11.46360 -11.37541 -11.15133 -11.07968 -11.06757 -10.88403 -10.74388 -10.37583 -10.36602 -9.79737 -9.63763 -9.37227 -9.04638 -8.57793 -7.74100 -6.21120 -4.33620 -0.02035 0.77582 1.45235 1.52896 3.16513 3.16913 3.20050 3.22701 3.28383 3.87472 4.23110 4.27256 4.53417 4.69797 5.05956 5.06889 5.21684 5.54735 5.64488 5.72012 5.75589 5.84997 6.14109 6.15389 6.43695 6.50266 6.59744 6.67136 6.75050 6.94970 7.14879 7.31596 7.46388 7.53856 7.76614 7.77816 7.91112 8.15027 8.66040 9.33775 10.80235 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.032534 B = 0.003622 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.423256 B = 7728.447729 C = 8397.804605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.059 3.941 3 C -0.134 4.134 4 C -0.514 4.514 5 H 0.058 0.942 6 C 0.069 3.931 7 N -0.883 5.883 8 Si 0.896 3.104 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.120 3.880 13 N -0.697 5.697 14 C 0.252 3.748 15 C -0.184 4.184 16 C -0.004 4.004 17 C -0.105 4.105 18 N 0.047 4.953 19 O -0.183 6.183 20 O -0.179 6.179 21 C -0.038 4.038 22 C 0.009 3.991 23 F -0.129 7.129 24 H 0.006 0.994 25 H 0.088 0.912 26 H 0.028 0.972 27 H 0.028 0.972 28 H 0.088 0.912 29 H 0.006 0.994 30 H 0.263 0.737 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.411 0.589 34 H 0.156 0.844 35 H 0.154 0.846 36 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.383 -1.960 10.785 11.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.058 3.942 3 C -0.191 4.191 4 C -0.553 4.553 5 H 0.076 0.924 6 C -0.133 4.133 7 N -0.520 5.520 8 Si 0.723 3.277 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 C -0.002 4.002 13 N -0.317 5.317 14 C 0.136 3.864 15 C -0.208 4.208 16 C -0.025 4.025 17 C -0.193 4.193 18 N 0.560 4.440 19 O -0.394 6.394 20 O -0.391 6.391 21 C -0.059 4.059 22 C -0.016 4.016 23 F -0.108 7.108 24 H 0.025 0.975 25 H 0.107 0.893 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.107 0.893 29 H 0.025 0.975 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.249 0.751 34 H 0.174 0.826 35 H 0.172 0.828 36 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 1.151 -1.633 9.739 9.942 hybrid contribution 0.014 -0.014 -0.555 0.556 sum 1.165 -1.647 9.184 9.403 Atomic orbital electron populations 1.21862 0.97529 0.99351 1.00373 1.18342 0.92977 0.92843 0.90031 1.21860 0.98681 0.98207 1.00374 1.20859 1.32282 1.12404 0.89726 0.92367 1.24883 0.94634 0.94830 0.98998 1.69777 1.36041 1.22520 1.23707 0.86595 0.79252 0.79773 0.82047 1.20183 1.21198 1.20179 1.22124 0.98354 0.96210 0.83512 1.45772 1.52073 1.31471 1.02376 1.18413 0.90558 0.91662 0.85800 1.20575 1.04302 0.98060 0.97847 1.20774 0.94416 0.97832 0.89473 1.20271 1.13593 1.03184 0.82205 1.43404 0.98166 0.99471 1.02921 1.94507 1.57187 1.59580 1.28164 1.94507 1.35213 1.15957 1.93383 1.20490 0.94178 0.93600 0.97681 1.16618 1.02851 0.90270 0.91851 1.91512 1.72515 1.50340 1.96448 0.97521 0.89320 0.95251 0.95247 0.89327 0.97512 0.92674 0.91942 0.91945 0.75080 0.82606 0.82812 0.82408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 8.08 37.16 0.30 -2.46 16 2 C 0.06 1.21 0.50 -155.66 -0.08 1.13 16 3 C -0.13 -2.76 8.08 37.16 0.30 -2.46 16 4 C -0.51 -12.11 8.01 -34.44 -0.28 -12.38 16 5 H 0.06 1.35 7.74 -52.49 -0.41 0.94 16 6 C 0.07 1.68 5.15 -17.82 -0.09 1.59 16 7 N -0.88 -22.17 9.35 55.43 0.52 -21.65 16 8 Si 0.90 19.29 29.54 -169.99 -5.02 14.27 16 9 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 10 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 12 C 0.12 1.99 3.74 -4.04 -0.02 1.98 16 13 N -0.70 -10.24 5.14 -58.56 -0.30 -10.54 16 14 C 0.25 3.32 6.66 -83.67 -0.56 2.76 16 15 C -0.18 -2.13 9.31 -39.39 -0.37 -2.49 16 16 C 0.00 -0.05 9.55 -39.60 -0.38 -0.43 16 17 C -0.10 -1.33 6.85 -79.92 -0.55 -1.88 16 18 N 0.05 0.68 4.45 33.98 0.15 0.83 16 19 O -0.18 -2.76 18.44 -29.46 -0.54 -3.30 16 20 O -0.18 -2.65 18.44 -29.46 -0.54 -3.19 16 21 C -0.04 -0.47 9.53 -39.55 -0.38 -0.84 16 22 C 0.01 0.12 7.31 -39.26 -0.29 -0.17 16 23 F -0.13 -1.75 16.64 2.25 0.04 -1.71 16 24 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 25 H 0.09 2.08 6.07 -51.93 -0.32 1.77 16 26 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.09 2.08 6.07 -51.93 -0.32 1.76 16 29 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 30 H 0.26 6.44 8.31 -40.82 -0.34 6.10 16 31 H 0.06 1.01 7.94 -51.93 -0.41 0.60 16 32 H 0.06 1.01 7.96 -51.93 -0.41 0.60 16 33 H 0.41 6.23 5.65 -40.82 -0.23 5.99 16 34 H 0.16 1.63 6.74 -52.49 -0.35 1.28 16 35 H 0.15 1.44 7.60 -52.49 -0.40 1.04 16 36 H 0.16 1.70 7.60 -52.48 -0.40 1.30 16 LS Contribution 307.80 15.07 4.64 4.64 Total: -1.00 -24.62 307.80 -7.38 -32.00 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -3.94 Total: 4.32 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: -2.37 Total: -15.67 kcal Atomic # 7 Polarization: -31.73 SS G_CDS: 0.37 Total: -31.36 kcal Atomic # 8 Polarization: -5.41 SS G_CDS: -1.09 Total: -6.49 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.27 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -24.62 -7.38 -32.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413409664.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.393 kcal (2) G-P(sol) polarization free energy of solvation -24.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds