Wall clock time and date at job start Tue Mar 31 2020 05:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46851 * 2 1 4 4 C 1.50706 * 109.47148 * 239.99912 * 2 1 3 5 5 H 1.07996 * 119.99755 * 241.10519 * 4 2 1 6 6 C 1.37881 * 119.99695 * 61.10439 * 4 2 1 7 7 N 1.31513 * 119.99216 * 194.52721 * 6 4 2 8 8 Si 1.86798 * 120.00240 * 14.52671 * 6 4 2 9 9 H 1.48496 * 109.47087 * 84.74510 * 8 6 4 10 10 H 1.48500 * 109.46903 * 204.74427 * 8 6 4 11 11 H 1.48501 * 109.46904 * 324.74639 * 8 6 4 12 12 C 1.52997 * 109.46960 * 120.00164 * 2 1 3 13 13 N 1.46502 * 109.46784 * 300.00036 * 12 2 1 14 14 C 1.39830 * 119.99878 * 180.02562 * 13 12 2 15 15 C 1.38902 * 120.04898 * 2.66363 * 14 13 12 16 16 C 1.38095 * 119.95198 * 180.02562 * 15 14 13 17 17 C 1.38490 * 120.05022 * 359.97438 * 16 15 14 18 18 F 1.35093 * 119.95207 * 179.97438 * 17 16 15 19 19 C 1.38444 * 120.09591 * 0.02627 * 17 16 15 20 20 C 1.38144 * 120.05161 * 359.67702 * 19 17 16 21 21 N 1.48008 * 120.02943 * 180.30314 * 20 19 17 22 22 O 1.21790 * 120.00217 * 142.18607 * 21 20 19 23 23 O 1.21798 * 119.99420 * 322.18345 * 21 20 19 24 24 H 1.08993 * 109.47393 * 309.07324 * 1 2 3 25 25 H 1.08999 * 109.47032 * 69.07836 * 1 2 3 26 26 H 1.09004 * 109.47368 * 189.07416 * 1 2 3 27 27 H 1.09000 * 109.46534 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47224 * 299.99890 * 3 2 1 29 29 H 1.08999 * 109.47285 * 60.00118 * 3 2 1 30 30 H 0.97002 * 119.99225 * 179.97438 * 7 6 4 31 31 H 1.08997 * 109.47422 * 60.00181 * 12 2 1 32 32 H 1.09000 * 109.47120 * 180.02562 * 12 2 1 33 33 H 0.97002 * 120.00721 * 0.02562 * 13 12 2 34 34 H 1.08003 * 120.02462 * 0.02562 * 15 14 13 35 35 H 1.08000 * 119.97827 * 180.02562 * 16 15 14 36 36 H 1.08001 * 119.97641 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6385 -1.5988 -1.1314 6 6 1.7182 -0.2262 -2.4826 7 7 1.9020 -0.9803 -3.5443 8 14 1.0315 1.5007 -2.6710 9 1 2.1506 2.4752 -2.7253 10 1 0.2406 1.5848 -3.9251 11 1 0.1573 1.8149 -1.5124 12 6 2.0400 -0.7213 1.2492 13 7 1.5516 -0.0306 2.4453 14 6 1.8898 -0.5081 3.7154 15 6 2.7336 -1.6038 3.8446 16 6 3.0659 -2.0739 5.0998 17 6 2.5588 -1.4535 6.2294 18 9 2.8847 -1.9154 7.4563 19 6 1.7175 -0.3612 6.1029 20 6 1.3874 0.1163 4.8494 21 7 0.4934 1.2881 4.7150 22 8 0.6996 2.1148 3.8447 23 8 -0.4486 1.4256 5.4747 24 1 -0.3634 0.6477 0.7977 25 1 -0.3633 0.3670 -0.9599 26 1 -0.3634 -1.0148 0.1621 27 1 3.1300 1.4424 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6805 -0.6398 -4.4252 31 1 1.6767 -1.7489 1.2492 32 1 3.1300 -0.7209 1.2495 33 1 0.9936 0.7578 2.3564 34 1 3.1296 -2.0877 2.9640 35 1 3.7223 -2.9256 5.2007 36 1 1.3229 0.1209 6.9851 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413410906.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:15 Heat of formation + Delta-G solvation = -6.759771 kcal Electronic energy + Delta-G solvation = -22359.085464 eV Core-core repulsion = 18761.831729 eV Total energy + Delta-G solvation = -3597.253735 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.07020 -42.20355 -39.66731 -37.45424 -36.49431 -34.32434 -32.20140 -31.82412 -29.24316 -26.62513 -26.47028 -26.04712 -24.88114 -22.83566 -22.21631 -19.59592 -19.19821 -18.70782 -18.02202 -17.34369 -16.64541 -16.35119 -16.16695 -15.82073 -15.34569 -14.75611 -14.54701 -14.42139 -13.42134 -13.33290 -13.10511 -12.95853 -12.79614 -12.28253 -12.11238 -12.01101 -11.67500 -11.56989 -11.11524 -11.04639 -10.58811 -10.41842 -10.39233 -10.21665 -9.99530 -9.83860 -9.27456 -8.79063 -8.57915 -7.74594 -6.27552 -4.26313 -0.03745 0.88469 1.10221 1.40712 3.06163 3.19008 3.19714 3.28232 3.33950 3.94722 4.15159 4.26710 4.44544 4.69938 4.79701 5.03620 5.14339 5.42132 5.47278 5.60410 5.71980 5.74423 5.91277 6.08362 6.17230 6.29916 6.37168 6.39232 6.42594 6.60135 6.71162 6.95675 7.04146 7.24737 7.45962 7.59544 7.66338 8.28025 8.73897 9.36531 10.84880 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.025142 B = 0.004817 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.409714 B = 5810.944454 C = 6664.418358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.032 3.968 3 C -0.153 4.153 4 C -0.519 4.519 5 H 0.077 0.923 6 C 0.080 3.920 7 N -0.887 5.887 8 Si 0.882 3.118 9 H -0.284 1.284 10 H -0.303 1.303 11 H -0.248 1.248 12 C 0.130 3.870 13 N -0.706 5.706 14 C 0.281 3.719 15 C -0.168 4.168 16 C -0.053 4.053 17 C 0.029 3.971 18 F -0.135 7.135 19 C -0.048 4.048 20 C -0.113 4.113 21 N 0.042 4.958 22 O -0.176 6.176 23 O -0.157 6.157 24 H 0.022 0.978 25 H 0.060 0.940 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.044 0.956 29 H 0.036 0.964 30 H 0.266 0.734 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.413 0.587 34 H 0.159 0.841 35 H 0.151 0.849 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.399 -0.792 16.444 16.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.030 3.970 3 C -0.209 4.209 4 C -0.557 4.557 5 H 0.095 0.905 6 C -0.124 4.124 7 N -0.523 5.523 8 Si 0.715 3.285 9 H -0.211 1.211 10 H -0.232 1.232 11 H -0.174 1.174 12 C 0.008 3.992 13 N -0.332 5.332 14 C 0.164 3.836 15 C -0.191 4.191 16 C -0.073 4.073 17 C 0.007 3.993 18 F -0.114 7.114 19 C -0.068 4.068 20 C -0.203 4.203 21 N 0.558 4.442 22 O -0.385 6.385 23 O -0.375 6.375 24 H 0.041 0.959 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.255 0.745 34 H 0.176 0.824 35 H 0.169 0.831 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.885 -1.431 16.038 16.211 hybrid contribution -0.702 1.497 -0.107 1.657 sum 1.183 0.066 15.930 15.974 Atomic orbital electron populations 1.22319 0.97723 0.99809 1.00397 1.18690 0.92651 0.92567 0.93065 1.22394 1.01160 0.98053 0.99337 1.20608 1.34564 1.12607 0.87881 0.90525 1.24936 0.94406 0.97314 0.95752 1.69939 1.47627 1.35820 0.98928 0.87323 0.79537 0.85418 0.76259 1.21103 1.23192 1.17407 1.21900 0.98794 0.96057 0.82409 1.46121 1.52523 1.32154 1.02406 1.17685 0.89869 0.91375 0.84685 1.20692 1.01874 0.97763 0.98726 1.21282 0.96839 0.98566 0.90580 1.16858 1.03870 0.97853 0.80727 1.91512 1.91590 1.88015 1.40267 1.20414 0.95514 0.94815 0.96075 1.19984 1.08887 0.96534 0.94925 1.43361 1.00253 1.01103 0.99457 1.94504 1.78125 1.37294 1.28590 1.94522 1.20515 1.82180 1.40268 0.95925 0.92144 0.93438 0.92710 0.93730 0.94519 0.92376 0.91339 0.91231 0.74483 0.82383 0.83131 0.82972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 7.54 37.16 0.28 -2.65 16 2 C 0.03 0.65 0.50 -155.66 -0.08 0.57 16 3 C -0.15 -3.07 7.52 37.16 0.28 -2.79 16 4 C -0.52 -12.99 8.62 -34.44 -0.30 -13.29 16 5 H 0.08 2.05 7.99 -52.49 -0.42 1.63 16 6 C 0.08 2.12 5.31 -17.82 -0.09 2.03 16 7 N -0.89 -25.46 13.96 55.43 0.77 -24.68 16 8 Si 0.88 20.69 22.81 -169.99 -3.88 16.81 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 11 H -0.25 -5.42 4.64 56.52 0.26 -5.16 16 12 C 0.13 2.18 3.74 -4.04 -0.02 2.17 16 13 N -0.71 -10.93 5.06 -58.61 -0.30 -11.23 16 14 C 0.28 3.81 6.61 -83.73 -0.55 3.26 16 15 C -0.17 -1.83 9.31 -39.39 -0.37 -2.19 16 16 C -0.05 -0.49 10.02 -39.54 -0.40 -0.88 16 17 C 0.03 0.31 7.30 -39.41 -0.29 0.02 16 18 F -0.14 -1.44 17.26 2.25 0.04 -1.40 16 19 C -0.05 -0.55 9.64 -39.54 -0.38 -0.93 16 20 C -0.11 -1.55 6.50 -79.76 -0.52 -2.07 16 21 N 0.04 0.66 4.31 34.06 0.15 0.81 16 22 O -0.18 -3.00 16.67 -29.46 -0.49 -3.49 16 23 O -0.16 -2.49 18.95 -29.46 -0.56 -3.05 16 24 H 0.02 0.41 7.12 -51.93 -0.37 0.04 16 25 H 0.06 1.31 4.32 -51.93 -0.22 1.08 16 26 H 0.05 0.92 8.12 -51.93 -0.42 0.50 16 27 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.04 0.96 2.24 -51.93 -0.12 0.84 16 29 H 0.04 0.66 6.86 -51.93 -0.36 0.31 16 30 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.07 1.11 8.05 -51.93 -0.42 0.69 16 32 H 0.07 1.11 7.85 -51.93 -0.41 0.70 16 33 H 0.41 6.88 3.67 -40.82 -0.15 6.73 16 34 H 0.16 1.55 6.74 -52.48 -0.35 1.19 16 35 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.15 1.53 8.02 -52.49 -0.42 1.11 16 LS Contribution 295.99 15.07 4.46 4.46 Total: -1.00 -27.90 295.99 -6.01 -33.91 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -3.78 Total: 4.63 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -2.43 Total: -16.77 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: 0.62 Total: -35.11 kcal Atomic # 8 Polarization: -5.49 SS G_CDS: -1.05 Total: -6.54 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -3.88 Total: 16.81 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.90 -6.01 -33.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413410906.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.153 kcal (2) G-P(sol) polarization free energy of solvation -27.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds