Wall clock time and date at job start Tue Mar 31 2020 06:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47308 * 2 1 4 4 N 1.46496 * 109.47195 * 120.00462 * 2 1 3 5 5 C 1.34773 * 120.00079 * 275.00026 * 4 2 1 6 6 O 1.21283 * 119.99672 * 359.97438 * 5 4 2 7 7 C 1.50698 * 120.00352 * 180.02562 * 5 4 2 8 8 H 1.09001 * 109.47122 * 319.99720 * 7 5 4 9 9 N 1.46906 * 109.47167 * 199.99509 * 7 5 4 10 10 C 1.52997 * 109.47342 * 79.99610 * 7 5 4 11 11 C 1.53011 * 109.47134 * 185.00123 * 10 7 5 12 12 C 1.50697 * 109.46746 * 179.97438 * 11 10 7 13 13 H 1.07996 * 120.00457 * 0.02562 * 12 11 10 14 14 C 1.37887 * 119.99417 * 179.97438 * 12 11 10 15 15 N 1.31510 * 120.00162 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99665 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47231 * 90.00052 * 16 14 12 18 18 H 1.48508 * 109.47010 * 210.00035 * 16 14 12 19 19 H 1.48494 * 109.47398 * 329.99988 * 16 14 12 20 20 C 1.50700 * 109.46858 * 239.99844 * 2 1 3 21 21 C 1.33391 * 125.19962 * 99.99993 * 20 2 1 22 22 C 1.38421 * 114.92191 * 179.97438 * 21 20 2 23 23 C 1.33387 * 114.92049 * 0.02562 * 22 21 20 24 24 S 1.75879 * 125.20668 * 279.69845 * 20 2 1 25 25 H 1.09003 * 109.46567 * 300.00007 * 1 2 3 26 26 H 1.09000 * 109.47144 * 59.99577 * 1 2 3 27 27 H 1.09002 * 109.47308 * 179.97438 * 1 2 3 28 28 H 0.97007 * 120.00296 * 94.99564 * 4 2 1 29 29 H 1.00896 * 111.00309 * 299.99562 * 9 7 5 30 30 H 1.00902 * 110.99923 * 63.95725 * 9 7 5 31 31 H 1.09000 * 109.47278 * 304.99798 * 10 7 5 32 32 H 1.08994 * 109.47510 * 65.00307 * 10 7 5 33 33 H 1.09000 * 109.46772 * 299.99985 * 11 10 7 34 34 H 1.08998 * 109.46554 * 60.00185 * 11 10 7 35 35 H 0.96991 * 119.99848 * 179.97438 * 15 14 12 36 36 H 1.08004 * 122.54167 * 0.02562 * 21 20 2 37 37 H 1.08005 * 122.54105 * 180.02562 * 22 21 20 38 38 H 1.08009 * 125.20562 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1471 -0.0185 2.3571 6 8 1.8591 1.1584 2.4115 7 6 2.6500 -0.7287 3.5874 8 1 2.2157 -1.7275 3.6333 9 7 2.2614 0.0298 4.7839 10 6 4.1748 -0.8380 3.5257 11 6 4.6750 -1.6669 4.7106 12 6 6.1769 -1.7750 4.6495 13 1 6.7203 -1.2998 3.8463 14 6 6.8573 -2.4799 5.6198 15 7 6.1956 -3.0583 6.5981 16 14 8.7189 -2.6134 5.5445 17 1 9.3269 -1.4829 6.2912 18 1 9.1483 -3.8975 6.1546 19 1 9.1618 -2.5660 4.1279 20 6 2.0323 -0.7105 -1.2305 21 6 2.4670 -0.1118 -2.3404 22 6 2.8810 -0.9716 -3.3430 23 6 2.7821 -2.2686 -3.0475 24 16 2.1420 -2.4556 -1.4200 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 2.2490 -1.6319 1.1525 29 1 2.6519 0.9599 4.7651 30 1 1.2577 0.0609 4.8822 31 1 4.4670 -1.3227 2.5942 32 1 4.6126 0.1592 3.5694 33 1 4.3828 -1.1823 5.6422 34 1 4.2372 -2.6642 4.6668 35 1 6.6742 -3.5544 7.2804 36 1 2.4947 0.9625 -2.4483 37 1 3.2559 -0.6191 -4.2926 38 1 3.0570 -3.0799 -3.7055 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424063207.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:11 Heat of formation + Delta-G solvation = -20.456545 kcal Electronic energy + Delta-G solvation = -19491.828765 eV Core-core repulsion = 16460.194269 eV Total energy + Delta-G solvation = -3031.634495 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.98927 -38.20045 -35.79236 -35.02667 -32.79115 -31.40099 -30.07602 -28.70213 -26.44187 -24.79689 -23.70707 -22.00257 -20.75502 -20.11211 -19.17334 -17.95939 -16.91176 -16.23959 -15.79045 -15.65651 -15.40328 -14.65618 -14.44839 -14.13155 -13.97514 -13.42193 -13.26151 -12.93565 -12.67381 -12.44001 -12.30145 -12.14555 -11.99879 -11.63175 -11.51679 -10.90761 -10.88690 -10.66721 -10.54228 -10.14462 -9.78942 -9.37521 -9.24894 -8.98806 -8.92486 -8.70548 -8.34543 -8.19850 -5.92695 -3.94666 0.72127 1.34197 1.74083 2.46695 2.74479 3.24267 3.35862 3.42009 3.45127 4.30839 4.51148 4.81771 4.85614 4.97724 5.05232 5.13541 5.22226 5.30773 5.42901 5.47826 5.52952 5.66534 5.82330 5.83383 5.93536 6.03356 6.17068 6.39496 6.46250 6.66048 7.09421 7.34562 7.55227 7.77259 7.80009 7.97247 8.14139 8.26458 8.49753 9.13236 9.68409 11.18265 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.016481 B = 0.004090 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.527207 B = 6844.560421 C = 8022.379771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.212 3.788 3 H 0.103 0.897 4 N -0.727 5.727 5 C 0.487 3.513 6 O -0.551 6.551 7 C 0.079 3.921 8 H 0.098 0.902 9 N -0.806 5.806 10 C -0.096 4.096 11 C 0.031 3.969 12 C -0.522 4.522 13 H 0.052 0.948 14 C 0.058 3.942 15 N -0.893 5.893 16 Si 0.888 3.112 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.275 1.275 20 C -0.187 4.187 21 C -0.129 4.129 22 C -0.134 4.134 23 C -0.211 4.211 24 S 0.111 5.889 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.401 0.599 29 H 0.348 0.652 30 H 0.334 0.666 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.035 0.965 34 H 0.013 0.987 35 H 0.259 0.741 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.970 2.642 -18.852 22.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.105 3.895 3 H 0.121 0.879 4 N -0.381 5.381 5 C 0.273 3.727 6 O -0.429 6.429 7 C -0.037 4.037 8 H 0.116 0.884 9 N -0.334 5.334 10 C -0.134 4.134 11 C -0.006 4.006 12 C -0.560 4.560 13 H 0.070 0.930 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.716 3.284 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.200 1.200 20 C -0.305 4.305 21 C -0.160 4.160 22 C -0.165 4.165 23 C -0.347 4.347 24 S 0.374 5.626 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.236 0.764 29 H 0.162 0.838 30 H 0.146 0.854 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.031 0.969 35 H 0.069 0.931 36 H 0.159 0.841 37 H 0.159 0.841 38 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -12.083 1.576 -17.302 21.162 hybrid contribution 1.082 1.205 -1.827 2.442 sum -11.000 2.781 -19.129 22.241 Atomic orbital electron populations 1.22187 0.93946 1.02569 1.02873 1.19289 0.94006 0.96359 0.79845 0.87930 1.46381 1.68010 1.14204 1.09472 1.22804 0.75975 0.88016 0.85887 1.90642 1.50686 1.16213 1.85327 1.21853 0.99963 0.97471 0.84446 0.88401 1.58995 1.15300 1.22295 1.36787 1.21667 0.88229 1.01653 1.01855 1.19018 0.94801 0.94121 0.92636 1.21278 0.92510 1.32514 1.09737 0.93002 1.24984 0.98061 0.95728 0.95504 1.69969 1.35272 1.34693 1.13261 0.86658 0.86227 0.77373 0.78096 1.20718 1.21285 1.20015 1.24705 1.08643 0.96769 1.00341 1.20108 1.01573 1.01435 0.92859 1.20163 1.03186 0.92238 1.00902 1.25669 1.08740 1.00753 0.99560 1.84326 1.62714 1.03704 1.11840 0.91333 0.91376 0.92180 0.76400 0.83795 0.85448 0.92826 0.92808 0.94643 0.96853 0.93109 0.84129 0.84136 0.81743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 9.47 37.16 0.35 -1.23 16 2 C 0.21 2.45 3.00 -69.08 -0.21 2.24 16 3 H 0.10 1.32 7.56 -51.93 -0.39 0.92 16 4 N -0.73 -9.44 5.06 -54.93 -0.28 -9.72 16 5 C 0.49 7.63 7.03 -10.99 -0.08 7.55 16 6 O -0.55 -9.88 15.91 5.55 0.09 -9.79 16 7 C 0.08 1.32 3.15 -68.86 -0.22 1.10 16 8 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 9 N -0.81 -13.55 8.44 -5.65 -0.05 -13.59 16 10 C -0.10 -1.95 4.78 -26.73 -0.13 -2.08 16 11 C 0.03 0.80 4.86 -27.88 -0.14 0.67 16 12 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 13 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 15 N -0.89 -26.98 13.29 55.43 0.74 -26.24 16 16 Si 0.89 21.84 29.54 -169.99 -5.02 16.81 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 C -0.19 -1.97 5.45 -36.00 -0.20 -2.17 16 21 C -0.13 -1.25 10.04 -41.21 -0.41 -1.66 16 22 C -0.13 -1.18 10.18 -41.21 -0.42 -1.59 16 23 C -0.21 -1.85 11.23 29.04 0.33 -1.52 16 24 S 0.11 1.08 22.30 -107.50 -2.40 -1.31 16 25 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.40 4.80 7.67 -40.82 -0.31 4.49 16 29 H 0.35 5.93 8.58 -39.29 -0.34 5.59 16 30 H 0.33 4.83 9.06 -39.29 -0.36 4.48 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.04 0.98 7.75 -51.93 -0.40 0.58 16 34 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.14 1.16 8.06 -52.48 -0.42 0.73 16 37 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 38 H 0.17 1.07 8.06 -52.48 -0.42 0.65 16 LS Contribution 337.45 15.07 5.09 5.09 Total: -1.00 -32.20 337.45 -8.93 -41.14 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -5.57 Total: 9.88 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: -1.53 Total: -12.25 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: 0.41 Total: -49.55 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -2.40 Total: -1.31 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.20 -8.93 -41.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424063207.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.679 kcal (2) G-P(sol) polarization free energy of solvation -32.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds