Wall clock time and date at job start Tue Mar 31 2020 06:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47338 * 2 1 4 4 N 1.46498 * 109.47242 * 119.99759 * 2 1 3 5 5 C 1.34779 * 119.99978 * 275.00222 * 4 2 1 6 6 O 1.21279 * 119.99890 * 359.97438 * 5 4 2 7 7 C 1.50697 * 119.99775 * 179.97438 * 5 4 2 8 8 H 1.08998 * 109.47793 * 40.00300 * 7 5 4 9 9 N 1.46901 * 109.46912 * 159.99971 * 7 5 4 10 10 C 1.53006 * 109.47301 * 279.99751 * 7 5 4 11 11 C 1.52999 * 109.46997 * 175.00426 * 10 7 5 12 12 C 1.50706 * 109.46573 * 180.02562 * 11 10 7 13 13 H 1.07995 * 120.00167 * 359.72054 * 12 11 10 14 14 C 1.37879 * 119.99394 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00338 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99424 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47474 * 90.00322 * 16 14 12 18 18 H 1.48507 * 109.46754 * 210.00056 * 16 14 12 19 19 H 1.48498 * 109.47278 * 329.99887 * 16 14 12 20 20 C 1.50708 * 109.47417 * 239.99724 * 2 1 3 21 21 C 1.33384 * 125.20233 * 99.99556 * 20 2 1 22 22 C 1.38427 * 114.91735 * 179.97438 * 21 20 2 23 23 C 1.33385 * 114.92427 * 0.02562 * 22 21 20 24 24 S 1.75881 * 125.20165 * 279.69864 * 20 2 1 25 25 H 1.09007 * 109.47159 * 60.00498 * 1 2 3 26 26 H 1.08998 * 109.47338 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47107 * 300.00275 * 1 2 3 28 28 H 0.97004 * 120.00084 * 94.99622 * 4 2 1 29 29 H 1.00903 * 110.99982 * 296.03961 * 9 7 5 30 30 H 1.00900 * 111.00110 * 60.00140 * 9 7 5 31 31 H 1.09000 * 109.46866 * 55.00213 * 10 7 5 32 32 H 1.09001 * 109.46611 * 295.00330 * 10 7 5 33 33 H 1.09000 * 109.47486 * 60.00167 * 11 10 7 34 34 H 1.09001 * 109.47362 * 299.99445 * 11 10 7 35 35 H 0.96996 * 119.99730 * 179.97438 * 15 14 12 36 36 H 1.08000 * 122.54226 * 0.02562 * 21 20 2 37 37 H 1.08005 * 122.53689 * 180.02562 * 22 21 20 38 38 H 1.08003 * 125.20606 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3571 6 8 1.8589 1.1587 2.4114 7 6 2.6488 -0.7287 3.5877 8 1 3.4549 -1.4084 3.3116 9 7 3.1501 0.2587 4.5530 10 6 1.5047 -1.5242 4.2196 11 6 2.0415 -2.3435 5.3949 12 6 0.9146 -3.1275 6.0168 13 1 -0.0852 -3.0458 5.6168 14 6 1.1593 -3.9451 7.0997 15 7 2.3758 -4.0404 7.5902 16 14 -0.2373 -4.9175 7.8701 17 1 -0.3419 -6.2428 7.2083 18 1 0.0316 -5.1072 9.3182 19 1 -1.5119 -4.1755 7.6964 20 6 2.0324 -0.7105 -1.2305 21 6 2.4671 -0.1119 -2.3404 22 6 2.8812 -0.9719 -3.3429 23 6 2.7823 -2.2689 -3.0473 24 16 2.1421 -2.4556 -1.4198 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 2.2490 -1.6318 1.1527 29 1 3.9482 0.7531 4.1831 30 1 2.4210 0.9010 4.8250 31 1 1.0743 -2.1947 3.4757 32 1 0.7377 -0.8366 4.5761 33 1 2.4719 -1.6730 6.1388 34 1 2.8085 -3.0311 5.0384 35 1 2.5477 -4.6154 8.3523 36 1 2.4946 0.9623 -2.4484 37 1 3.2560 -0.6195 -4.2925 38 1 3.0573 -3.0801 -3.7050 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424063210.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:14 Heat of formation + Delta-G solvation = -20.571794 kcal Electronic energy + Delta-G solvation = -19456.052299 eV Core-core repulsion = 16424.412806 eV Total energy + Delta-G solvation = -3031.639493 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.99189 -38.23277 -35.79166 -35.03226 -32.79518 -31.39712 -30.08168 -28.70255 -26.45866 -24.78173 -23.72145 -22.00176 -20.78888 -20.11422 -19.19370 -17.95861 -16.94858 -16.26239 -15.81097 -15.58942 -15.36191 -14.83123 -14.41387 -14.11774 -13.85701 -13.51615 -13.23940 -12.96673 -12.67398 -12.45672 -12.31753 -12.12051 -11.97846 -11.62255 -11.50221 -10.91429 -10.88854 -10.67207 -10.55179 -10.14328 -9.80178 -9.37157 -9.25939 -8.99758 -8.94802 -8.74660 -8.34898 -8.20266 -5.93111 -3.95243 0.68294 1.31146 1.71413 2.42625 2.73984 3.24047 3.35133 3.41658 3.45106 4.30152 4.50632 4.77822 4.84926 5.00975 5.04108 5.16219 5.19531 5.27059 5.42425 5.52325 5.53310 5.69472 5.80386 5.83088 5.95758 6.05888 6.13314 6.39305 6.45270 6.65136 7.08698 7.34471 7.55139 7.76720 7.79895 7.96931 8.13677 8.26344 8.49036 9.12703 9.67872 11.17789 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.020514 B = 0.003660 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.619221 B = 7649.359375 C = 8318.588439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.212 3.788 3 H 0.102 0.898 4 N -0.728 5.728 5 C 0.487 3.513 6 O -0.551 6.551 7 C 0.078 3.922 8 H 0.098 0.902 9 N -0.806 5.806 10 C -0.095 4.095 11 C 0.031 3.969 12 C -0.522 4.522 13 H 0.052 0.948 14 C 0.058 3.942 15 N -0.892 5.892 16 Si 0.889 3.111 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.275 1.275 20 C -0.186 4.186 21 C -0.130 4.130 22 C -0.135 4.135 23 C -0.214 4.214 24 S 0.115 5.885 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.401 0.599 29 H 0.334 0.666 30 H 0.348 0.652 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.035 0.965 34 H 0.013 0.987 35 H 0.259 0.741 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.178 6.014 -22.213 23.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.106 3.894 3 H 0.120 0.880 4 N -0.381 5.381 5 C 0.273 3.727 6 O -0.429 6.429 7 C -0.038 4.038 8 H 0.116 0.884 9 N -0.334 5.334 10 C -0.133 4.133 11 C -0.006 4.006 12 C -0.561 4.561 13 H 0.070 0.930 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.717 3.283 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.200 1.200 20 C -0.304 4.304 21 C -0.161 4.161 22 C -0.165 4.165 23 C -0.349 4.349 24 S 0.378 5.622 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.236 0.764 29 H 0.146 0.854 30 H 0.162 0.838 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.031 0.969 35 H 0.069 0.931 36 H 0.158 0.842 37 H 0.158 0.842 38 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 0.881 4.908 -20.609 21.203 hybrid contribution -0.516 0.783 -1.437 1.716 sum 0.366 5.691 -22.046 22.772 Atomic orbital electron populations 1.22199 0.93782 1.02859 1.02944 1.19290 0.94256 0.96130 0.79764 0.87999 1.46384 1.68123 1.14136 1.09450 1.22801 0.76472 0.87874 0.85524 1.90641 1.50616 1.16464 1.85142 1.21859 1.00100 0.94860 0.86952 0.88402 1.58996 1.11721 1.21914 1.40747 1.21663 0.94406 0.97515 0.99759 1.19019 0.95829 0.93989 0.91766 1.21278 0.95035 1.25618 1.14135 0.92984 1.24991 0.95401 0.97000 0.96941 1.69974 1.19592 1.38944 1.24655 0.86653 0.82735 0.80407 0.78519 1.20775 1.21273 1.19978 1.24742 1.08397 0.96838 1.00429 1.20100 1.01792 1.01402 0.92846 1.20160 1.03289 0.92242 1.00853 1.25688 1.08728 1.00740 0.99788 1.84461 1.62543 1.03606 1.11582 0.91446 0.91995 0.91104 0.76407 0.85432 0.83801 0.92853 0.92791 0.94643 0.96851 0.93104 0.84159 0.84179 0.81766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 9.47 37.15 0.35 -1.41 16 2 C 0.21 2.45 3.00 -69.08 -0.21 2.24 16 3 H 0.10 1.26 7.56 -51.93 -0.39 0.86 16 4 N -0.73 -9.42 5.06 -54.93 -0.28 -9.70 16 5 C 0.49 7.62 7.03 -10.99 -0.08 7.54 16 6 O -0.55 -9.87 15.91 5.56 0.09 -9.78 16 7 C 0.08 1.31 3.15 -68.86 -0.22 1.10 16 8 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 9 N -0.81 -13.58 8.44 -5.65 -0.05 -13.62 16 10 C -0.10 -1.92 4.78 -26.73 -0.13 -2.04 16 11 C 0.03 0.79 4.86 -27.88 -0.14 0.66 16 12 C -0.52 -14.76 9.11 -34.44 -0.31 -15.08 16 13 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -26.92 13.29 55.43 0.74 -26.19 16 16 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 20 C -0.19 -1.89 5.45 -36.00 -0.20 -2.09 16 21 C -0.13 -1.18 10.04 -41.21 -0.41 -1.59 16 22 C -0.13 -1.09 10.18 -41.21 -0.42 -1.51 16 23 C -0.21 -1.75 11.23 29.04 0.33 -1.42 16 24 S 0.11 1.09 22.30 -107.50 -2.40 -1.30 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.40 4.79 7.67 -40.82 -0.31 4.47 16 29 H 0.33 4.88 9.06 -39.29 -0.36 4.52 16 30 H 0.35 5.92 8.58 -39.29 -0.34 5.59 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.04 0.98 7.75 -51.93 -0.40 0.58 16 34 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 38 H 0.16 0.98 8.06 -52.48 -0.42 0.55 16 LS Contribution 337.45 15.07 5.09 5.09 Total: -1.00 -32.02 337.45 -8.93 -40.95 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -5.57 Total: 9.86 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -1.53 Total: -12.04 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: 0.41 Total: -49.51 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.09 Total: -9.78 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -2.40 Total: -1.30 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.02 -8.93 -40.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424063210.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.381 kcal (2) G-P(sol) polarization free energy of solvation -32.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds