Wall clock time and date at job start Tue Mar 31 2020 05:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38427 * 122.53962 * 2 1 4 4 C 1.33393 * 114.92075 * 180.27713 * 3 2 1 5 5 S 1.75890 * 109.59051 * 359.77167 * 4 3 2 6 6 C 1.33392 * 122.54116 * 179.83651 * 2 1 3 7 7 C 1.50701 * 125.19966 * 0.02562 * 6 2 1 8 8 N 1.46499 * 109.46992 * 89.71940 * 7 6 2 9 9 C 1.34779 * 119.99872 * 179.97438 * 8 7 6 10 10 O 1.21278 * 120.00071 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.99944 * 180.02562 * 9 8 7 12 12 H 1.09000 * 109.47233 * 39.99819 * 11 9 8 13 13 N 1.46899 * 109.47186 * 160.00102 * 11 9 8 14 14 C 1.53002 * 109.46903 * 280.00082 * 11 9 8 15 15 C 1.53000 * 109.46897 * 174.99962 * 14 11 9 16 16 C 1.50704 * 109.47161 * 180.02562 * 15 14 11 17 17 H 1.07994 * 119.99613 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00013 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99834 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99708 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47371 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47282 * 119.99927 * 20 18 16 23 23 H 1.48508 * 109.47202 * 239.99789 * 20 18 16 24 24 H 1.09006 * 109.46888 * 270.16701 * 1 2 3 25 25 H 1.09000 * 109.46973 * 30.16503 * 1 2 3 26 26 H 1.09003 * 109.46896 * 150.16686 * 1 2 3 27 27 H 1.08001 * 122.54146 * 0.04564 * 3 2 1 28 28 H 1.07996 * 125.20270 * 179.75230 * 4 3 2 29 29 H 1.09002 * 109.47060 * 209.72152 * 7 6 2 30 30 H 1.09001 * 109.47380 * 329.72240 * 7 6 2 31 31 H 0.97000 * 120.00420 * 0.02562 * 8 7 6 32 32 H 1.00902 * 111.00261 * 296.04666 * 13 11 9 33 33 H 1.00900 * 110.99955 * 60.00114 * 13 11 9 34 34 H 1.09002 * 109.47089 * 294.99911 * 14 11 9 35 35 H 1.09003 * 109.47194 * 55.00321 * 14 11 9 36 36 H 1.09002 * 109.47209 * 299.99875 * 15 14 11 37 37 H 1.09003 * 109.46906 * 60.00182 * 15 14 11 38 38 H 0.97000 * 119.99904 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1670 0.0000 4 6 3.5737 0.9901 -0.0059 5 16 3.9386 -0.7305 -0.0052 6 6 2.2245 -1.1245 0.0032 7 6 1.6537 -2.5192 0.0066 8 7 1.4630 -2.9722 -1.3735 9 6 0.9605 -4.1989 -1.6167 10 8 0.6666 -4.9279 -0.6931 11 6 0.7648 -4.6651 -3.0364 12 1 1.6090 -4.3407 -3.6450 13 7 0.6770 -6.1312 -3.0627 14 6 -0.5272 -4.0666 -3.5962 15 6 -0.6625 -4.4376 -5.0744 16 6 -1.9348 -3.8476 -5.6260 17 1 -2.5823 -3.2666 -4.9861 18 6 -2.2727 -4.0505 -6.9473 19 7 -1.4848 -4.7594 -7.7260 20 14 -3.8501 -3.3198 -7.6307 21 1 -4.5548 -2.5726 -6.5582 22 1 -3.5247 -2.3958 -8.7467 23 1 -4.7251 -4.4107 -8.1304 24 1 -0.3633 0.0030 1.0277 25 1 -0.3633 0.8885 -0.5164 26 1 -0.3633 -0.8915 -0.5113 27 1 1.7965 2.1464 0.0007 28 1 4.3078 1.7822 -0.0106 29 1 2.3418 -3.1922 0.5182 30 1 0.6945 -2.5180 0.5244 31 1 1.6990 -2.3895 -2.1122 32 1 1.5426 -6.5509 -2.7581 33 1 -0.0985 -6.4570 -2.5054 34 1 -1.3797 -4.4609 -3.0431 35 1 -0.4988 -2.9816 -3.4951 36 1 0.1900 -4.0433 -5.6274 37 1 -0.6909 -5.5225 -5.1755 38 1 -1.7223 -4.9018 -8.6556 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424088256.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:06 Heat of formation + Delta-G solvation = -24.251412 kcal Electronic energy + Delta-G solvation = -19374.032075 eV Core-core repulsion = 16342.233022 eV Total energy + Delta-G solvation = -3031.799053 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.87569 -38.64180 -35.35808 -34.79199 -32.78973 -31.35871 -30.09781 -29.16825 -26.54351 -25.11861 -23.40083 -22.58481 -20.67429 -19.87724 -18.68785 -17.86834 -16.82495 -16.33566 -15.90797 -15.58397 -15.34603 -14.83683 -14.43359 -14.19095 -13.80917 -13.64659 -13.42312 -12.90108 -12.76351 -12.32582 -12.25882 -12.07052 -11.96301 -11.85548 -11.52003 -10.97383 -10.90914 -10.68561 -10.52482 -10.17677 -9.80104 -9.37710 -9.11169 -9.04519 -8.96911 -8.59570 -8.33337 -8.18753 -5.93402 -3.95420 0.62898 1.34558 1.71926 2.35802 2.76429 3.34082 3.40918 3.41969 3.45598 4.39640 4.50515 4.65083 4.88056 4.92912 5.08414 5.16459 5.30292 5.36974 5.42308 5.44621 5.50591 5.54997 5.77146 5.78052 5.84117 6.15318 6.25255 6.35913 6.45229 6.65684 7.09363 7.37420 7.58888 7.77035 7.80594 7.96924 8.13709 8.29094 8.49016 9.12803 9.67760 11.17573 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.017771 B = 0.003713 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.193870 B = 7538.499122 C = 8404.160651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.079 4.079 3 C -0.134 4.134 4 C -0.206 4.206 5 S 0.107 5.893 6 C -0.208 4.208 7 C 0.193 3.807 8 N -0.727 5.727 9 C 0.484 3.516 10 O -0.554 6.554 11 C 0.079 3.921 12 H 0.098 0.902 13 N -0.807 5.807 14 C -0.095 4.095 15 C 0.031 3.969 16 C -0.521 4.521 17 H 0.052 0.948 18 C 0.058 3.942 19 N -0.892 5.892 20 Si 0.888 3.112 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.284 1.284 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.141 0.859 28 H 0.165 0.835 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.405 0.595 32 H 0.334 0.666 33 H 0.348 0.652 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.013 0.987 37 H 0.035 0.965 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.811 10.718 16.862 22.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.093 4.093 3 C -0.164 4.164 4 C -0.342 4.342 5 S 0.373 5.627 6 C -0.326 4.326 7 C 0.068 3.932 8 N -0.380 5.380 9 C 0.270 3.730 10 O -0.432 6.432 11 C -0.037 4.037 12 H 0.116 0.884 13 N -0.334 5.334 14 C -0.133 4.133 15 C -0.007 4.007 16 C -0.560 4.560 17 H 0.071 0.929 18 C -0.143 4.143 19 N -0.532 5.532 20 Si 0.716 3.284 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.211 1.211 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.159 0.841 28 H 0.182 0.818 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.240 0.760 32 H 0.146 0.854 33 H 0.162 0.838 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.031 0.969 37 H 0.053 0.947 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 11.868 9.329 16.555 22.405 hybrid contribution -1.687 1.794 0.304 2.481 sum 10.181 11.123 16.859 22.618 Atomic orbital electron populations 1.20617 0.89380 1.03565 1.02521 1.18978 0.97717 0.91466 1.01114 1.20096 0.92854 0.99396 1.04073 1.25655 0.99834 0.99183 1.09539 1.84354 1.05404 1.00281 1.72684 1.24286 0.96106 0.98591 1.13573 1.19554 1.00594 0.88137 0.84913 1.46291 1.66318 1.17554 1.07839 1.22818 0.75162 0.80732 0.94296 1.90648 1.50904 1.54889 1.46725 1.21846 1.02695 0.90027 0.89106 0.88412 1.59002 1.09050 1.03643 1.61722 1.21656 0.92237 0.98306 1.01110 1.19026 0.96247 0.98283 0.87102 1.21315 1.06794 1.32612 0.95249 0.92938 1.24991 0.96752 0.95381 0.97216 1.69985 1.37171 1.39780 1.06235 0.86603 0.83846 0.78954 0.78963 1.19859 1.21116 1.21058 0.90989 0.91054 0.90892 0.84083 0.81754 0.90854 0.89779 0.76040 0.85449 0.83818 0.92832 0.92830 0.96879 0.94652 0.93166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.92 9.60 36.01 0.35 -0.57 16 2 C -0.08 -0.77 5.80 -106.25 -0.62 -1.39 16 3 C -0.13 -1.16 9.98 -41.21 -0.41 -1.57 16 4 C -0.21 -1.68 11.23 29.04 0.33 -1.36 16 5 S 0.11 0.98 23.33 -107.50 -2.51 -1.53 16 6 C -0.21 -2.14 5.87 -36.00 -0.21 -2.35 16 7 C 0.19 2.23 5.52 -5.19 -0.03 2.20 16 8 N -0.73 -9.20 5.55 -61.47 -0.34 -9.55 16 9 C 0.48 7.54 7.07 -10.98 -0.08 7.47 16 10 O -0.55 -10.08 16.25 5.56 0.09 -9.99 16 11 C 0.08 1.32 3.15 -68.86 -0.22 1.10 16 12 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 13 N -0.81 -13.59 8.44 -5.65 -0.05 -13.64 16 14 C -0.09 -1.90 4.78 -26.73 -0.13 -2.03 16 15 C 0.03 0.78 4.86 -27.88 -0.14 0.64 16 16 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 17 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -26.91 13.29 55.43 0.74 -26.17 16 20 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 21 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 26 H 0.07 0.75 7.26 -51.93 -0.38 0.37 16 27 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 28 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 1.01 7.33 -51.93 -0.38 0.62 16 31 H 0.40 4.68 8.46 -40.82 -0.35 4.33 16 32 H 0.33 4.89 9.06 -39.29 -0.36 4.53 16 33 H 0.35 5.94 8.58 -39.29 -0.34 5.60 16 34 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.04 0.98 7.75 -51.93 -0.40 0.57 16 38 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 LS Contribution 337.74 15.07 5.09 5.09 Total: -1.00 -32.18 337.74 -9.11 -41.29 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -5.54 Total: 9.11 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: -1.56 Total: -11.30 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: 0.35 Total: -49.36 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.09 Total: -9.99 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.51 Total: -1.53 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.18 -9.11 -41.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424088256.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.043 kcal (2) G-P(sol) polarization free energy of solvation -32.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds