Wall clock time and date at job start Tue Mar 31 2020 05:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38427 * 122.53962 * 2 1 4 4 C 1.33393 * 114.92075 * 180.27713 * 3 2 1 5 5 S 1.75890 * 109.59051 * 359.77167 * 4 3 2 6 6 C 1.33392 * 122.54116 * 179.83651 * 2 1 3 7 7 C 1.50701 * 125.19966 * 0.02562 * 6 2 1 8 8 N 1.46499 * 109.46992 * 89.71940 * 7 6 2 9 9 C 1.34779 * 119.99872 * 179.97438 * 8 7 6 10 10 O 1.21278 * 120.00071 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.99944 * 180.02562 * 9 8 7 12 12 H 1.09000 * 109.47233 * 39.99819 * 11 9 8 13 13 N 1.46899 * 109.47186 * 160.00102 * 11 9 8 14 14 C 1.53002 * 109.46903 * 280.00082 * 11 9 8 15 15 C 1.53000 * 109.46897 * 174.99962 * 14 11 9 16 16 C 1.50704 * 109.47161 * 180.02562 * 15 14 11 17 17 H 1.07994 * 119.99613 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00013 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99834 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99708 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47371 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47282 * 119.99927 * 20 18 16 23 23 H 1.48508 * 109.47202 * 239.99789 * 20 18 16 24 24 H 1.09006 * 109.46888 * 270.16701 * 1 2 3 25 25 H 1.09000 * 109.46973 * 30.16503 * 1 2 3 26 26 H 1.09003 * 109.46896 * 150.16686 * 1 2 3 27 27 H 1.08001 * 122.54146 * 0.04564 * 3 2 1 28 28 H 1.07996 * 125.20270 * 179.75230 * 4 3 2 29 29 H 1.09002 * 109.47060 * 209.72152 * 7 6 2 30 30 H 1.09001 * 109.47380 * 329.72240 * 7 6 2 31 31 H 0.97000 * 120.00420 * 0.02562 * 8 7 6 32 32 H 1.00902 * 111.00261 * 296.04666 * 13 11 9 33 33 H 1.00900 * 110.99955 * 60.00114 * 13 11 9 34 34 H 1.09002 * 109.47089 * 294.99911 * 14 11 9 35 35 H 1.09003 * 109.47194 * 55.00321 * 14 11 9 36 36 H 1.09002 * 109.47209 * 299.99875 * 15 14 11 37 37 H 1.09003 * 109.46906 * 60.00182 * 15 14 11 38 38 H 0.97000 * 119.99904 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1670 0.0000 4 6 3.5737 0.9901 -0.0059 5 16 3.9386 -0.7305 -0.0052 6 6 2.2245 -1.1245 0.0032 7 6 1.6537 -2.5192 0.0066 8 7 1.4630 -2.9722 -1.3735 9 6 0.9605 -4.1989 -1.6167 10 8 0.6666 -4.9279 -0.6931 11 6 0.7648 -4.6651 -3.0364 12 1 1.6090 -4.3407 -3.6450 13 7 0.6770 -6.1312 -3.0627 14 6 -0.5272 -4.0666 -3.5962 15 6 -0.6625 -4.4376 -5.0744 16 6 -1.9348 -3.8476 -5.6260 17 1 -2.5823 -3.2666 -4.9861 18 6 -2.2727 -4.0505 -6.9473 19 7 -1.4848 -4.7594 -7.7260 20 14 -3.8501 -3.3198 -7.6307 21 1 -4.5548 -2.5726 -6.5582 22 1 -3.5247 -2.3958 -8.7467 23 1 -4.7251 -4.4107 -8.1304 24 1 -0.3633 0.0030 1.0277 25 1 -0.3633 0.8885 -0.5164 26 1 -0.3633 -0.8915 -0.5113 27 1 1.7965 2.1464 0.0007 28 1 4.3078 1.7822 -0.0106 29 1 2.3418 -3.1922 0.5182 30 1 0.6945 -2.5180 0.5244 31 1 1.6990 -2.3895 -2.1122 32 1 1.5426 -6.5509 -2.7581 33 1 -0.0985 -6.4570 -2.5054 34 1 -1.3797 -4.4609 -3.0431 35 1 -0.4988 -2.9816 -3.4951 36 1 0.1900 -4.0433 -5.6274 37 1 -0.6909 -5.5225 -5.1755 38 1 -1.7223 -4.9018 -8.6556 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424088256.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:05 Heat of formation + Delta-G solvation = -46.652403 kcal Electronic energy + Delta-G solvation = -19375.003455 eV Core-core repulsion = 16342.233022 eV Total energy + Delta-G solvation = -3032.770433 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.10285 -39.42433 -36.86530 -35.94860 -34.80100 -32.15454 -31.90927 -30.06464 -28.09625 -26.33856 -24.85151 -23.39344 -22.32871 -21.24718 -19.49120 -18.88698 -18.29622 -17.90199 -17.14359 -16.88249 -16.43425 -16.24977 -15.84887 -15.36716 -14.97848 -14.65872 -14.56013 -14.26919 -13.84039 -13.64422 -13.61274 -13.38301 -12.93433 -12.81946 -12.79264 -12.56924 -12.50091 -12.23285 -11.77932 -11.66913 -11.65732 -11.25185 -10.99911 -10.48570 -10.22301 -9.85951 -9.49991 -9.28971 -8.12743 -6.22808 -0.08457 0.64492 1.03820 1.42224 1.43251 1.48528 1.55868 1.65000 2.31182 2.45943 3.20550 3.55870 3.59584 3.86361 4.01771 4.07839 4.15084 4.32652 4.45401 4.55821 4.57269 4.69454 4.77411 4.79207 4.95073 5.10208 5.11256 5.25758 5.27946 5.45569 5.56513 5.58846 5.85735 5.99998 6.09609 6.31716 6.40963 6.53380 6.96093 7.08358 7.45365 8.98747 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.017771 B = 0.003713 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.193870 B = 7538.499122 C = 8404.160651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.079 4.079 3 C -0.146 4.146 4 C -0.196 4.196 5 S 0.102 5.898 6 C -0.228 4.228 7 C 0.198 3.802 8 N -0.712 5.712 9 C 0.492 3.508 10 O -0.580 6.580 11 C 0.086 3.914 12 H 0.109 0.891 13 N -0.818 5.818 14 C -0.081 4.081 15 C 0.038 3.962 16 C -0.542 4.542 17 H 0.056 0.944 18 C 0.002 3.998 19 N -0.930 5.930 20 Si 0.959 3.041 21 H -0.263 1.263 22 H -0.278 1.278 23 H -0.281 1.281 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.056 0.944 27 H 0.161 0.839 28 H 0.190 0.810 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.412 0.588 32 H 0.347 0.653 33 H 0.346 0.654 34 H 0.044 0.956 35 H 0.066 0.934 36 H -0.007 1.007 37 H 0.006 0.994 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.797 12.722 17.474 24.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.094 4.094 3 C -0.175 4.175 4 C -0.332 4.332 5 S 0.367 5.633 6 C -0.345 4.345 7 C 0.073 3.927 8 N -0.364 5.364 9 C 0.277 3.723 10 O -0.460 6.460 11 C -0.030 4.030 12 H 0.127 0.873 13 N -0.347 5.347 14 C -0.119 4.119 15 C 0.001 3.999 16 C -0.580 4.580 17 H 0.074 0.926 18 C -0.196 4.196 19 N -0.571 5.571 20 Si 0.784 3.216 21 H -0.187 1.187 22 H -0.203 1.203 23 H -0.207 1.207 24 H 0.100 0.900 25 H 0.100 0.900 26 H 0.075 0.925 27 H 0.179 0.821 28 H 0.207 0.793 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.248 0.752 32 H 0.160 0.840 33 H 0.159 0.841 34 H 0.062 0.938 35 H 0.085 0.915 36 H 0.012 0.988 37 H 0.024 0.976 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.878 11.362 17.180 23.776 hybrid contribution -1.627 1.213 0.130 2.034 sum 10.250 12.575 17.309 23.724 Atomic orbital electron populations 1.20632 0.89111 1.03261 1.03072 1.19206 0.98124 0.91813 1.00216 1.20318 0.93049 0.99845 1.04337 1.26014 1.00297 0.98966 1.07930 1.84376 1.04616 1.01511 1.72770 1.24150 0.96893 0.97925 1.15535 1.19506 1.00403 0.89067 0.83719 1.46187 1.64813 1.16511 1.08935 1.22383 0.75333 0.81364 0.93212 1.90641 1.52358 1.55851 1.47143 1.21636 1.01245 0.89974 0.90104 0.87332 1.58977 1.09794 1.03900 1.62049 1.21382 0.93780 0.99258 0.97484 1.18838 0.94648 0.96057 0.90331 1.21760 1.07796 1.32666 0.95761 0.92564 1.25897 1.00302 0.95744 0.97671 1.70113 1.39202 1.41084 1.06659 0.85490 0.79444 0.78222 0.78415 1.18723 1.20331 1.20734 0.90047 0.89988 0.92478 0.82122 0.79251 0.91163 0.90292 0.75208 0.84009 0.84061 0.93767 0.91493 0.98824 0.97574 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.68 9.60 71.24 0.68 -1.00 16 2 C -0.08 -1.42 5.80 -20.92 -0.12 -1.54 16 3 C -0.15 -2.15 9.98 21.22 0.21 -1.94 16 4 C -0.20 -2.68 11.23 66.72 0.75 -1.93 16 5 S 0.10 1.70 23.33 -56.49 -1.32 0.39 16 6 C -0.23 -4.40 5.87 24.59 0.14 -4.26 16 7 C 0.20 4.42 5.52 85.63 0.47 4.90 16 8 N -0.71 -17.42 5.55 -466.78 -2.59 -20.01 16 9 C 0.49 15.03 7.07 87.66 0.62 15.65 16 10 O -0.58 -20.90 16.25 -3.02 -0.05 -20.95 16 11 C 0.09 2.85 3.15 44.17 0.14 2.99 16 12 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 13 N -0.82 -27.71 8.44 -171.80 -1.45 -29.16 16 14 C -0.08 -3.23 4.78 30.59 0.15 -3.08 16 15 C 0.04 2.00 4.86 29.85 0.15 2.14 16 16 C -0.54 -30.69 9.11 25.60 0.23 -30.45 16 17 H 0.06 3.07 7.74 -2.91 -0.02 3.05 16 18 C 0.00 0.09 5.46 84.66 0.46 0.55 16 19 N -0.93 -56.74 13.29 21.45 0.28 -56.45 16 20 Si 0.96 44.34 29.54 68.60 2.03 46.37 16 21 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 23 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 24 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 25 H 0.08 1.16 8.13 -2.39 -0.02 1.14 16 26 H 0.06 1.12 7.26 -2.39 -0.02 1.11 16 27 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 28 H 0.19 1.55 8.06 -2.91 -0.02 1.52 16 29 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.08 1.86 7.33 -2.39 -0.02 1.84 16 31 H 0.41 9.02 8.46 -92.71 -0.78 8.23 16 32 H 0.35 10.07 9.06 -89.69 -0.81 9.26 16 33 H 0.35 11.94 8.58 -89.69 -0.77 11.17 16 34 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 36 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 37 H 0.01 0.34 7.75 -2.39 -0.02 0.32 16 38 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -68.52 337.74 -0.48 -69.01 By element: Atomic # 1 Polarization: 30.06 SS G_CDS: -1.28 Total: 28.78 kcal Atomic # 6 Polarization: -21.86 SS G_CDS: 3.89 Total: -17.97 kcal Atomic # 7 Polarization: -101.87 SS G_CDS: -3.75 Total: -105.63 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.05 Total: -20.95 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -1.32 Total: 0.39 kcal Total: -68.52 -0.48 -69.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424088256.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.357 kcal (2) G-P(sol) polarization free energy of solvation -68.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds