Wall clock time and date at job start Tue Mar 31 2020 05:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47469 * 2 1 4 4 C 1.50699 * 109.46925 * 120.00146 * 2 1 3 5 5 N 1.30945 * 122.90638 * 305.57308 * 4 2 1 6 6 C 1.29426 * 117.36612 * 180.34591 * 5 4 2 7 7 S 1.70956 * 110.39132 * 359.71352 * 6 5 4 8 8 C 1.35663 * 122.90677 * 125.38161 * 4 2 1 9 9 C 1.46684 * 126.12891 * 359.96452 * 8 4 2 10 10 O 1.21690 * 120.00230 * 354.26335 * 9 8 4 11 11 N 1.34775 * 120.00066 * 174.26531 * 9 8 4 12 12 C 1.46507 * 119.99989 * 179.72493 * 11 9 8 13 13 C 1.53000 * 109.47140 * 180.27354 * 12 11 9 14 14 C 1.53000 * 109.47098 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.46980 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00040 * 359.97438 * 15 14 13 17 17 C 1.37872 * 119.99738 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00350 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99989 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46944 * 90.00032 * 19 17 15 21 21 H 1.48495 * 109.47352 * 209.99942 * 19 17 15 22 22 H 1.48498 * 109.47082 * 330.00109 * 19 17 15 23 23 H 1.08998 * 109.47546 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46741 * 300.00281 * 1 2 3 25 25 H 1.09004 * 109.46475 * 60.00003 * 1 2 3 26 26 H 1.09002 * 109.46741 * 239.99719 * 2 1 3 27 27 H 1.09002 * 109.47564 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.46982 * 300.00236 * 3 2 1 29 29 H 1.09002 * 109.47369 * 60.00103 * 3 2 1 30 30 H 1.07995 * 124.80837 * 179.72715 * 6 5 4 31 31 H 0.96998 * 120.00212 * 359.97438 * 11 9 8 32 32 H 1.08999 * 109.46555 * 300.27280 * 12 11 9 33 33 H 1.09003 * 109.46933 * 60.27045 * 12 11 9 34 34 H 1.09000 * 109.46899 * 299.99756 * 13 12 11 35 35 H 1.08995 * 109.47176 * 59.99426 * 13 12 11 36 36 H 1.08999 * 109.46424 * 299.99820 * 14 13 12 37 37 H 1.08995 * 109.47257 * 59.99332 * 14 13 12 38 38 H 0.97006 * 120.00413 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.6664 -0.3780 2.4430 6 6 2.1696 -1.0568 3.4234 7 16 3.2217 -2.2673 2.8316 8 6 2.8997 -1.7522 1.1775 9 6 3.4720 -2.3402 -0.0383 10 8 3.0970 -1.9612 -1.1322 11 7 4.4132 -3.3003 0.0560 12 6 4.9804 -3.8918 -1.1584 13 6 6.0137 -4.9528 -0.7743 14 6 6.6065 -5.5701 -2.0425 15 6 7.6237 -6.6156 -1.6641 16 1 7.8274 -6.8191 -0.6232 17 6 8.2944 -7.3123 -2.6468 18 7 8.0461 -7.0649 -3.9144 19 14 9.5559 -8.6078 -2.1778 20 1 8.8860 -9.9266 -2.0472 21 1 10.6006 -8.6854 -3.2303 22 1 10.1840 -8.2412 -0.8830 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.9551 -0.8832 4.4675 31 1 4.7124 -3.6022 0.9278 32 1 4.1850 -4.3541 -1.7430 33 1 5.4616 -3.1137 -1.7510 34 1 6.8090 -4.4905 -0.1897 35 1 5.5325 -5.7308 -0.1817 36 1 5.8113 -6.0323 -2.6274 37 1 7.0877 -4.7919 -2.6347 38 1 8.5177 -7.5554 -4.6058 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448913124.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:03 Heat of formation + Delta-G solvation = -17.835022 kcal Electronic energy + Delta-G solvation = -19178.430964 eV Core-core repulsion = 16146.910146 eV Total energy + Delta-G solvation = -3031.520818 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.67554 -39.11165 -35.63057 -34.86255 -33.39912 -31.55704 -30.28412 -27.21242 -27.06164 -25.81964 -23.49071 -22.31113 -21.31159 -20.73226 -19.29870 -18.03972 -17.00029 -16.32978 -15.91393 -15.64871 -14.99817 -14.79493 -14.50906 -14.40883 -14.23571 -13.74109 -13.64173 -12.99385 -12.57811 -12.33137 -12.21657 -11.89416 -11.81053 -11.26878 -11.24817 -11.03307 -10.93315 -10.78090 -10.61045 -10.17403 -9.92349 -9.79227 -9.76841 -9.41468 -9.15897 -9.14718 -8.89378 -8.39885 -6.04439 -4.07756 0.02719 0.94443 1.31879 2.26640 3.10538 3.18298 3.29095 3.35710 3.38433 3.88505 4.42034 4.61718 4.72492 4.82371 5.10186 5.14826 5.31450 5.32694 5.58215 5.63189 5.70040 5.71868 5.76943 5.86281 6.01264 6.08501 6.15168 6.24332 6.46985 6.52757 6.73772 6.93715 7.32973 7.51446 7.59918 7.71865 7.93779 8.15336 8.34865 8.98739 9.56663 11.06801 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.030143 B = 0.003052 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.680336 B = 9171.574089 C = 9894.780825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.052 4.052 3 C -0.136 4.136 4 C 0.151 3.849 5 N -0.468 5.468 6 C 0.031 3.969 7 S 0.159 5.841 8 C -0.288 4.288 9 C 0.591 3.409 10 O -0.522 6.522 11 N -0.717 5.717 12 C 0.116 3.884 13 C -0.122 4.122 14 C 0.024 3.976 15 C -0.523 4.523 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 H 0.051 0.949 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.128 0.872 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.205 0.795 31 H 0.396 0.604 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.020 0.980 37 H 0.020 0.980 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.810 13.472 14.769 23.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.072 4.072 3 C -0.194 4.194 4 C 0.013 3.987 5 N -0.182 5.182 6 C -0.264 4.264 7 S 0.414 5.586 8 C -0.412 4.412 9 C 0.376 3.624 10 O -0.401 6.401 11 N -0.367 5.367 12 C -0.006 4.006 13 C -0.160 4.160 14 C -0.013 4.013 15 C -0.562 4.562 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.532 5.532 19 Si 0.721 3.279 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.199 1.199 23 H 0.070 0.930 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.146 0.854 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.221 0.779 31 H 0.230 0.770 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.743 13.306 14.468 23.426 hybrid contribution 0.593 -0.542 0.195 0.826 sum -12.151 12.764 14.663 22.925 Atomic orbital electron populations 1.21727 0.93775 1.01805 1.02051 1.20435 0.96424 0.96225 0.94125 1.21734 1.00946 0.94673 1.02051 1.20709 0.92424 0.92297 0.93267 1.66040 1.25164 1.28317 0.98642 1.28707 0.98165 0.95970 1.03577 1.84013 1.42960 1.33731 0.97924 1.25633 1.11111 1.06952 0.97510 1.16708 0.79422 0.79568 0.86707 1.90708 1.60981 1.61420 1.27032 1.46154 1.40475 1.38942 1.11151 1.21754 0.97000 0.96564 0.85262 1.21913 0.96179 0.95916 1.01988 1.19026 0.95717 0.95550 0.91034 1.21191 1.22001 1.20201 0.92769 0.92630 1.25026 0.97150 0.97269 0.94985 1.69962 1.42366 1.41634 0.99268 0.86580 0.81212 0.81941 0.78177 1.20644 1.21187 1.19879 0.92963 0.92184 0.92032 0.85436 0.92897 0.91870 0.92387 0.77858 0.76982 0.91275 0.91260 0.92622 0.92626 0.96203 0.96188 0.92890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.09 37.16 0.34 -1.10 16 2 C -0.05 -0.63 3.16 -91.77 -0.29 -0.92 16 3 C -0.14 -1.46 9.17 37.15 0.34 -1.12 16 4 C 0.15 1.90 5.39 -83.89 -0.45 1.45 16 5 N -0.47 -5.26 10.30 -11.53 -0.12 -5.38 16 6 C 0.03 0.26 12.22 51.75 0.63 0.89 16 7 S 0.16 1.40 22.37 -107.50 -2.40 -1.00 16 8 C -0.29 -3.68 6.48 -37.09 -0.24 -3.92 16 9 C 0.59 9.02 7.77 -12.85 -0.10 8.92 16 10 O -0.52 -9.37 14.02 5.20 0.07 -9.30 16 11 N -0.72 -10.43 5.55 -61.61 -0.34 -10.77 16 12 C 0.12 2.00 5.67 -4.04 -0.02 1.97 16 13 C -0.12 -2.33 5.27 -26.73 -0.14 -2.47 16 14 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 15 C -0.52 -14.43 9.11 -34.44 -0.31 -14.75 16 16 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.56 13.29 55.43 0.74 -25.83 16 19 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.62 8.07 -51.93 -0.42 0.20 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.13 1.84 4.95 -51.93 -0.26 1.58 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.20 0.87 8.06 -52.49 -0.42 0.44 16 31 H 0.40 4.84 7.67 -40.82 -0.31 4.52 16 32 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 334.51 15.07 5.04 5.04 Total: -1.00 -31.76 334.51 -8.12 -39.89 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -5.60 Total: 0.13 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: -0.48 Total: -9.05 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: 0.28 Total: -41.97 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.07 Total: -9.30 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -2.40 Total: -1.00 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.76 -8.12 -39.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448913124.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.050 kcal (2) G-P(sol) polarization free energy of solvation -31.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds