Wall clock time and date at job start Tue Mar 31 2020 05:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47469 * 2 1 4 4 C 1.50699 * 109.46925 * 120.00146 * 2 1 3 5 5 N 1.30945 * 122.90638 * 305.57308 * 4 2 1 6 6 C 1.29426 * 117.36612 * 180.34591 * 5 4 2 7 7 S 1.70956 * 110.39132 * 359.71352 * 6 5 4 8 8 C 1.35663 * 122.90677 * 125.38161 * 4 2 1 9 9 C 1.46684 * 126.12891 * 359.96452 * 8 4 2 10 10 O 1.21690 * 120.00230 * 354.26335 * 9 8 4 11 11 N 1.34775 * 120.00066 * 174.26531 * 9 8 4 12 12 C 1.46507 * 119.99989 * 179.72493 * 11 9 8 13 13 C 1.53000 * 109.47140 * 180.27354 * 12 11 9 14 14 C 1.53000 * 109.47098 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.46980 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00040 * 359.97438 * 15 14 13 17 17 C 1.37872 * 119.99738 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00350 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99989 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46944 * 90.00032 * 19 17 15 21 21 H 1.48495 * 109.47352 * 209.99942 * 19 17 15 22 22 H 1.48498 * 109.47082 * 330.00109 * 19 17 15 23 23 H 1.08998 * 109.47546 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46741 * 300.00281 * 1 2 3 25 25 H 1.09004 * 109.46475 * 60.00003 * 1 2 3 26 26 H 1.09002 * 109.46741 * 239.99719 * 2 1 3 27 27 H 1.09002 * 109.47564 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.46982 * 300.00236 * 3 2 1 29 29 H 1.09002 * 109.47369 * 60.00103 * 3 2 1 30 30 H 1.07995 * 124.80837 * 179.72715 * 6 5 4 31 31 H 0.96998 * 120.00212 * 359.97438 * 11 9 8 32 32 H 1.08999 * 109.46555 * 300.27280 * 12 11 9 33 33 H 1.09003 * 109.46933 * 60.27045 * 12 11 9 34 34 H 1.09000 * 109.46899 * 299.99756 * 13 12 11 35 35 H 1.08995 * 109.47176 * 59.99426 * 13 12 11 36 36 H 1.08999 * 109.46424 * 299.99820 * 14 13 12 37 37 H 1.08995 * 109.47257 * 59.99332 * 14 13 12 38 38 H 0.97006 * 120.00413 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.6664 -0.3780 2.4430 6 6 2.1696 -1.0568 3.4234 7 16 3.2217 -2.2673 2.8316 8 6 2.8997 -1.7522 1.1775 9 6 3.4720 -2.3402 -0.0383 10 8 3.0970 -1.9612 -1.1322 11 7 4.4132 -3.3003 0.0560 12 6 4.9804 -3.8918 -1.1584 13 6 6.0137 -4.9528 -0.7743 14 6 6.6065 -5.5701 -2.0425 15 6 7.6237 -6.6156 -1.6641 16 1 7.8274 -6.8191 -0.6232 17 6 8.2944 -7.3123 -2.6468 18 7 8.0461 -7.0649 -3.9144 19 14 9.5559 -8.6078 -2.1778 20 1 8.8860 -9.9266 -2.0472 21 1 10.6006 -8.6854 -3.2303 22 1 10.1840 -8.2412 -0.8830 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.9551 -0.8832 4.4675 31 1 4.7124 -3.6022 0.9278 32 1 4.1850 -4.3541 -1.7430 33 1 5.4616 -3.1137 -1.7510 34 1 6.8090 -4.4905 -0.1897 35 1 5.5325 -5.7308 -0.1817 36 1 5.8113 -6.0323 -2.6274 37 1 7.0877 -4.7919 -2.6347 38 1 8.5177 -7.5554 -4.6058 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000448913124.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:03 Heat of formation + Delta-G solvation = -38.660469 kcal Electronic energy + Delta-G solvation = -19179.334023 eV Core-core repulsion = 16146.910146 eV Total energy + Delta-G solvation = -3032.423877 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.61612 -40.22757 -37.07538 -35.81580 -35.21778 -33.23895 -31.38398 -28.69448 -28.05666 -26.84287 -25.11417 -23.31346 -22.45431 -22.34922 -20.42063 -18.91140 -18.56047 -17.82177 -17.07309 -16.88628 -16.48217 -15.98020 -15.93625 -15.35324 -15.21994 -15.06223 -14.64498 -14.27493 -13.82727 -13.79348 -13.54714 -13.35703 -13.01933 -12.75967 -12.58374 -12.41227 -12.19808 -12.14527 -11.88870 -11.70489 -11.52154 -11.22533 -11.05418 -10.67086 -10.61094 -10.55315 -10.21707 -9.87388 -8.19470 -6.30913 -0.79884 0.16975 0.55330 1.37248 1.42164 1.43314 1.54259 1.98604 2.04001 2.42464 3.14501 3.14713 3.64970 3.86943 4.00750 4.13917 4.17866 4.22524 4.32085 4.50775 4.53212 4.77786 4.82165 4.89850 4.91210 4.92818 5.01235 5.14187 5.16483 5.28725 5.30217 5.50410 5.52845 5.69648 5.83786 6.21481 6.31882 6.57716 6.86403 7.00502 7.38761 8.92585 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.030143 B = 0.003052 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.680336 B = 9171.574089 C = 9894.780825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.060 4.060 3 C -0.129 4.129 4 C 0.151 3.849 5 N -0.492 5.492 6 C 0.050 3.950 7 S 0.211 5.789 8 C -0.330 4.330 9 C 0.590 3.410 10 O -0.559 6.559 11 N -0.709 5.709 12 C 0.130 3.870 13 C -0.103 4.103 14 C 0.024 3.976 15 C -0.541 4.541 16 H 0.067 0.933 17 C -0.003 4.003 18 N -0.935 5.935 19 Si 0.966 3.034 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.260 1.260 23 H 0.042 0.958 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.102 0.898 27 H 0.041 0.959 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.249 0.751 31 H 0.409 0.591 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.069 0.931 36 H -0.006 1.006 37 H -0.006 1.006 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.791 13.426 17.947 25.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.080 4.080 3 C -0.187 4.187 4 C 0.012 3.988 5 N -0.206 5.206 6 C -0.244 4.244 7 S 0.467 5.533 8 C -0.454 4.454 9 C 0.377 3.623 10 O -0.440 6.440 11 N -0.360 5.360 12 C 0.007 3.993 13 C -0.141 4.141 14 C -0.013 4.013 15 C -0.579 4.579 16 H 0.085 0.915 17 C -0.201 4.201 18 N -0.575 5.575 19 Si 0.791 3.209 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.184 1.184 23 H 0.061 0.939 24 H 0.084 0.916 25 H 0.091 0.909 26 H 0.119 0.881 27 H 0.060 0.940 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.265 0.735 31 H 0.246 0.754 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.012 0.988 37 H 0.012 0.988 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.719 13.252 17.700 25.508 hybrid contribution 0.544 -0.492 -0.719 1.027 sum -12.175 12.760 16.981 24.483 Atomic orbital electron populations 1.21666 0.92639 1.01428 1.02875 1.20410 0.97416 0.96750 0.93448 1.21676 1.00163 0.93949 1.02910 1.20798 0.91983 0.92010 0.93995 1.66101 1.26454 1.29543 0.98471 1.29534 0.95902 0.94132 1.04859 1.83794 1.42181 1.32914 0.94376 1.25404 1.12834 1.08387 0.98792 1.17046 0.78886 0.79046 0.87319 1.90695 1.62041 1.62454 1.28828 1.45899 1.40449 1.38910 1.10785 1.21347 0.96112 0.95701 0.86150 1.21621 0.96790 0.96479 0.99227 1.18933 0.94686 0.94630 0.93096 1.21676 1.22309 1.20556 0.93372 0.91518 1.26012 0.99460 0.99730 0.94855 1.70109 1.43785 1.43074 1.00531 0.85425 0.78302 0.78924 0.78258 1.19839 1.21089 1.18392 0.93901 0.91609 0.90881 0.88058 0.94002 0.90738 0.91727 0.73518 0.75417 0.92505 0.92498 0.91321 0.91280 0.98804 0.98789 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 9.09 71.98 0.65 -2.02 16 2 C -0.06 -1.47 3.16 -11.54 -0.04 -1.50 16 3 C -0.13 -2.73 9.17 71.98 0.66 -2.07 16 4 C 0.15 3.70 5.39 42.09 0.23 3.92 16 5 N -0.49 -9.96 10.30 -190.40 -1.96 -11.92 16 6 C 0.05 0.65 12.22 130.60 1.60 2.25 16 7 S 0.21 3.14 22.37 -56.49 -1.26 1.88 16 8 C -0.33 -8.18 6.48 23.88 0.15 -8.03 16 9 C 0.59 18.27 7.77 86.45 0.67 18.94 16 10 O -0.56 -21.01 14.02 -4.32 -0.06 -21.07 16 11 N -0.71 -20.43 5.55 -467.06 -2.59 -23.02 16 12 C 0.13 4.56 5.67 86.38 0.49 5.05 16 13 C -0.10 -3.92 5.27 30.59 0.16 -3.76 16 14 C 0.02 1.25 4.97 29.85 0.15 1.39 16 15 C -0.54 -29.89 9.11 25.60 0.23 -29.66 16 16 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 17 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 18 N -0.93 -56.76 13.29 21.45 0.28 -56.48 16 19 Si 0.97 43.42 29.54 68.60 2.03 45.45 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 21 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 22 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 23 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.06 1.28 8.07 -2.39 -0.02 1.26 16 25 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.10 3.08 4.95 -2.39 -0.01 3.07 16 27 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 29 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.25 0.79 8.06 -2.91 -0.02 0.77 16 31 H 0.41 9.40 7.67 -92.71 -0.71 8.68 16 32 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.07 2.44 8.14 -2.39 -0.02 2.43 16 36 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 37 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 38 H 0.26 15.04 8.31 -92.70 -0.77 14.26 16 Total: -1.00 -70.45 334.51 2.20 -68.25 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 0.35 Total: 12.09 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: 5.42 Total: -15.18 kcal Atomic # 7 Polarization: -87.15 SS G_CDS: -4.27 Total: -91.42 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.06 Total: -21.07 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: 3.14 SS G_CDS: -1.26 Total: 1.88 kcal Total: -70.45 2.20 -68.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448913124.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.588 kcal (2) G-P(sol) polarization free energy of solvation -70.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds