Wall clock time and date at job start Tue Mar 31 2020 05:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.33386 * 122.53763 * 2 1 4 4 S 1.75891 * 109.59176 * 179.74980 * 3 2 1 5 5 C 1.75886 * 90.96733 * 0.23276 * 4 3 2 6 6 C 1.50709 * 125.19972 * 179.97438 * 5 4 3 7 7 N 1.46500 * 109.46862 * 270.01996 * 6 5 4 8 8 C 1.34770 * 120.00014 * 180.02562 * 7 6 5 9 9 O 1.21588 * 120.00074 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00074 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99941 * 180.02562 * 10 8 7 12 12 C 1.53007 * 109.47067 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.47098 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47330 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99506 * 359.97438 * 14 13 12 16 16 C 1.37870 * 120.00192 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00288 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00194 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46918 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47235 * 119.99728 * 18 16 14 21 21 H 1.48498 * 109.47275 * 240.00005 * 18 16 14 22 22 C 1.33384 * 109.59693 * 359.97438 * 5 4 3 23 23 H 1.09002 * 109.46861 * 90.02234 * 1 2 3 24 24 H 1.08996 * 109.46955 * 210.02379 * 1 2 3 25 25 H 1.08999 * 109.46605 * 330.02360 * 1 2 3 26 26 H 1.08002 * 125.20849 * 0.02562 * 3 2 1 27 27 H 1.08998 * 109.47224 * 30.02114 * 6 5 4 28 28 H 1.08995 * 109.46643 * 150.02296 * 6 5 4 29 29 H 0.97002 * 119.99693 * 359.97438 * 7 6 5 30 30 H 0.96996 * 120.00053 * 359.97438 * 10 8 7 31 31 H 1.09007 * 109.47393 * 299.99606 * 11 10 8 32 32 H 1.08995 * 109.47574 * 59.99662 * 11 10 8 33 33 H 1.09005 * 109.46741 * 299.99461 * 12 11 10 34 34 H 1.08995 * 109.47250 * 59.99401 * 12 11 10 35 35 H 1.09005 * 109.46727 * 299.99277 * 13 12 11 36 36 H 1.08999 * 109.47539 * 59.99017 * 13 12 11 37 37 H 0.97004 * 120.00342 * 180.02562 * 17 16 14 38 38 H 1.07997 * 122.54195 * 179.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2245 1.1245 0.0000 4 16 3.9387 0.7305 0.0072 5 6 3.5737 -0.9901 0.0028 6 6 4.5981 -2.0955 0.0052 7 7 4.9360 -2.4510 -1.3753 8 6 5.8374 -3.4227 -1.6195 9 8 6.3704 -4.0040 -0.6942 10 7 6.1487 -3.7493 -2.8895 11 6 7.1281 -4.8060 -3.1550 12 6 7.2975 -4.9764 -4.6660 13 6 8.3198 -6.0804 -4.9433 14 6 8.4872 -6.2479 -6.4316 15 1 7.9206 -5.6290 -7.1117 16 6 9.3635 -7.1910 -6.9250 17 7 10.0537 -7.9442 -6.0969 18 14 9.5704 -7.3991 -8.7698 19 1 8.6868 -6.4387 -9.4784 20 1 10.9843 -7.1388 -9.1418 21 1 9.2042 -8.7855 -9.1557 22 6 2.2516 -1.1669 -0.0030 23 1 -0.3633 -0.0004 -1.0277 24 1 -0.3633 -0.8897 0.5142 25 1 -0.3632 0.8902 0.5135 26 1 1.8155 2.1241 0.0004 27 1 5.4955 -1.7581 0.5236 28 1 4.1899 -2.9679 0.5155 29 1 4.5105 -1.9874 -2.1135 30 1 5.7238 -3.2853 -3.6277 31 1 8.0856 -4.5339 -2.7108 32 1 6.7790 -5.7426 -2.7202 33 1 6.3401 -5.2484 -5.1106 34 1 7.6467 -4.0398 -5.1004 35 1 9.2773 -5.8089 -4.4987 36 1 7.9702 -7.0170 -4.5089 37 1 10.6705 -8.6076 -6.4440 38 1 1.7965 -2.1463 -0.0070 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454439023.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:46 Heat of formation + Delta-G solvation = -19.812318 kcal Electronic energy + Delta-G solvation = -18381.727114 eV Core-core repulsion = 15350.120554 eV Total energy + Delta-G solvation = -3031.606560 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.87170 -38.69149 -35.72696 -34.79494 -33.30209 -31.77852 -30.82497 -28.30748 -27.02481 -25.86865 -23.05963 -21.92241 -20.85317 -20.37764 -19.33813 -18.35161 -17.29051 -16.53415 -16.01802 -15.66113 -15.23778 -14.56163 -14.36811 -14.35044 -14.06014 -13.93162 -13.58339 -13.26690 -12.94049 -12.35081 -12.27569 -12.16331 -12.04547 -11.78730 -11.64551 -11.05971 -10.91202 -10.71350 -10.55862 -10.17255 -9.84797 -9.45588 -9.24712 -9.12137 -9.06568 -8.69731 -8.59737 -8.36516 -6.00880 -4.03847 0.52610 1.24994 1.63659 2.21961 2.96216 3.30554 3.36393 3.38019 3.41572 4.24418 4.40939 4.47565 4.62943 4.83488 4.94542 5.16164 5.21844 5.23555 5.34936 5.42448 5.53254 5.72200 5.76682 5.83386 5.99317 6.12006 6.19954 6.35398 6.54103 6.64138 6.81320 7.03670 7.07290 7.65396 7.78118 7.98250 8.14130 8.39204 8.74079 9.03101 9.60291 11.10434 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.035228 B = 0.002267 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.623408 B =12347.751946 C =12620.552080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.106 4.106 3 C -0.215 4.215 4 S 0.115 5.885 5 C -0.198 4.198 6 C 0.213 3.787 7 N -0.749 5.749 8 C 0.701 3.299 9 O -0.593 6.593 10 N -0.740 5.740 11 C 0.135 3.865 12 C -0.120 4.120 13 C 0.023 3.977 14 C -0.521 4.521 15 H 0.056 0.944 16 C 0.056 3.944 17 N -0.893 5.893 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.112 4.112 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.164 0.836 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.396 0.604 30 H 0.394 0.606 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.260 0.740 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.904 19.130 12.761 29.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.351 4.351 4 S 0.381 5.619 5 C -0.316 4.316 6 C 0.088 3.912 7 N -0.406 5.406 8 C 0.401 3.599 9 O -0.471 6.471 10 N -0.395 5.395 11 C 0.012 3.988 12 C -0.158 4.158 13 C -0.014 4.014 14 C -0.559 4.559 15 H 0.074 0.926 16 C -0.146 4.146 17 N -0.533 5.533 18 Si 0.721 3.279 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.144 4.144 23 H 0.089 0.911 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.181 0.819 27 H 0.094 0.906 28 H 0.103 0.897 29 H 0.230 0.770 30 H 0.227 0.773 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.070 0.930 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -16.874 19.295 13.645 29.038 hybrid contribution -1.518 -0.468 -1.719 2.340 sum -18.392 18.827 11.927 28.895 Atomic orbital electron populations 1.20528 0.89659 1.02806 1.02439 1.18948 0.97590 0.91888 1.03420 1.25546 0.96111 1.02452 1.10983 1.84456 1.05674 0.99539 1.72258 1.24503 0.97836 0.97550 1.11664 1.19406 0.94999 0.93520 0.83321 1.45178 1.46566 1.40834 1.08059 1.15983 0.79806 0.80140 0.83992 1.90927 1.56689 1.56133 1.43322 1.45381 1.47036 1.41698 1.05346 1.21523 0.90545 0.88683 0.98076 1.21892 1.01304 1.01409 0.91228 1.19037 0.93210 0.92462 0.96734 1.21241 1.23656 1.19072 0.91966 0.92610 1.25035 0.95791 0.95841 0.97883 1.69976 1.26623 1.22516 1.34142 0.86526 0.77875 0.77907 0.85610 1.19782 1.21011 1.21014 1.20113 0.92204 0.99699 1.02349 0.91115 0.91330 0.91580 0.81883 0.90568 0.89725 0.77006 0.77283 0.91924 0.91918 0.92771 0.92760 0.96224 0.96222 0.92989 0.83969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.48 10.14 36.01 0.37 -0.12 16 2 C -0.11 -0.77 5.80 -106.25 -0.62 -1.38 16 3 C -0.21 -1.51 10.98 29.04 0.32 -1.19 16 4 S 0.11 0.92 23.33 -107.50 -2.51 -1.59 16 5 C -0.20 -1.71 5.88 -36.00 -0.21 -1.92 16 6 C 0.21 2.20 6.16 -5.19 -0.03 2.17 16 7 N -0.75 -8.43 5.55 -66.41 -0.37 -8.80 16 8 C 0.70 10.85 8.57 -86.92 -0.74 10.11 16 9 O -0.59 -11.71 16.34 5.29 0.09 -11.62 16 10 N -0.74 -10.91 5.56 -65.22 -0.36 -11.27 16 11 C 0.13 2.43 5.67 -4.04 -0.02 2.41 16 12 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 13 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 14 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 15 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 18 Si 0.89 21.56 29.54 -169.99 -5.02 16.53 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 C -0.11 -0.88 9.85 -41.21 -0.41 -1.29 16 23 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 24 H 0.07 0.31 8.13 -51.93 -0.42 -0.11 16 25 H 0.07 0.27 8.12 -51.93 -0.42 -0.15 16 26 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16 27 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.40 3.54 8.48 -40.82 -0.35 3.19 16 30 H 0.39 4.64 8.49 -40.82 -0.35 4.29 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 341.44 15.07 5.15 5.15 Total: -1.00 -33.13 341.44 -10.06 -43.19 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -5.73 Total: 1.30 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -2.04 Total: -6.70 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: 0.00 Total: -46.26 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.09 Total: -11.62 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 0.92 SS G_CDS: -2.51 Total: -1.59 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.13 -10.06 -43.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454439023.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.377 kcal (2) G-P(sol) polarization free energy of solvation -33.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds