Wall clock time and date at job start Tue Mar 31 2020 05:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.33386 * 122.53763 * 2 1 4 4 S 1.75891 * 109.59176 * 179.74980 * 3 2 1 5 5 C 1.75886 * 90.96733 * 0.23276 * 4 3 2 6 6 C 1.50709 * 125.19972 * 179.97438 * 5 4 3 7 7 N 1.46500 * 109.46862 * 270.01996 * 6 5 4 8 8 C 1.34770 * 120.00014 * 180.02562 * 7 6 5 9 9 O 1.21588 * 120.00074 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00074 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99941 * 180.02562 * 10 8 7 12 12 C 1.53007 * 109.47067 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.47098 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47330 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99506 * 359.97438 * 14 13 12 16 16 C 1.37870 * 120.00192 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00288 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00194 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46918 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47235 * 119.99728 * 18 16 14 21 21 H 1.48498 * 109.47275 * 240.00005 * 18 16 14 22 22 C 1.33384 * 109.59693 * 359.97438 * 5 4 3 23 23 H 1.09002 * 109.46861 * 90.02234 * 1 2 3 24 24 H 1.08996 * 109.46955 * 210.02379 * 1 2 3 25 25 H 1.08999 * 109.46605 * 330.02360 * 1 2 3 26 26 H 1.08002 * 125.20849 * 0.02562 * 3 2 1 27 27 H 1.08998 * 109.47224 * 30.02114 * 6 5 4 28 28 H 1.08995 * 109.46643 * 150.02296 * 6 5 4 29 29 H 0.97002 * 119.99693 * 359.97438 * 7 6 5 30 30 H 0.96996 * 120.00053 * 359.97438 * 10 8 7 31 31 H 1.09007 * 109.47393 * 299.99606 * 11 10 8 32 32 H 1.08995 * 109.47574 * 59.99662 * 11 10 8 33 33 H 1.09005 * 109.46741 * 299.99461 * 12 11 10 34 34 H 1.08995 * 109.47250 * 59.99401 * 12 11 10 35 35 H 1.09005 * 109.46727 * 299.99277 * 13 12 11 36 36 H 1.08999 * 109.47539 * 59.99017 * 13 12 11 37 37 H 0.97004 * 120.00342 * 180.02562 * 17 16 14 38 38 H 1.07997 * 122.54195 * 179.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2245 1.1245 0.0000 4 16 3.9387 0.7305 0.0072 5 6 3.5737 -0.9901 0.0028 6 6 4.5981 -2.0955 0.0052 7 7 4.9360 -2.4510 -1.3753 8 6 5.8374 -3.4227 -1.6195 9 8 6.3704 -4.0040 -0.6942 10 7 6.1487 -3.7493 -2.8895 11 6 7.1281 -4.8060 -3.1550 12 6 7.2975 -4.9764 -4.6660 13 6 8.3198 -6.0804 -4.9433 14 6 8.4872 -6.2479 -6.4316 15 1 7.9206 -5.6290 -7.1117 16 6 9.3635 -7.1910 -6.9250 17 7 10.0537 -7.9442 -6.0969 18 14 9.5704 -7.3991 -8.7698 19 1 8.6868 -6.4387 -9.4784 20 1 10.9843 -7.1388 -9.1418 21 1 9.2042 -8.7855 -9.1557 22 6 2.2516 -1.1669 -0.0030 23 1 -0.3633 -0.0004 -1.0277 24 1 -0.3633 -0.8897 0.5142 25 1 -0.3632 0.8902 0.5135 26 1 1.8155 2.1241 0.0004 27 1 5.4955 -1.7581 0.5236 28 1 4.1899 -2.9679 0.5155 29 1 4.5105 -1.9874 -2.1135 30 1 5.7238 -3.2853 -3.6277 31 1 8.0856 -4.5339 -2.7108 32 1 6.7790 -5.7426 -2.7202 33 1 6.3401 -5.2484 -5.1106 34 1 7.6467 -4.0398 -5.1004 35 1 9.2773 -5.8089 -4.4987 36 1 7.9702 -7.0170 -4.5089 37 1 10.6705 -8.6076 -6.4440 38 1 1.7965 -2.1463 -0.0070 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000454439023.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:45 Heat of formation + Delta-G solvation = -41.624688 kcal Electronic energy + Delta-G solvation = -18382.672969 eV Core-core repulsion = 15350.120554 eV Total energy + Delta-G solvation = -3032.552415 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.08307 -39.32620 -37.13481 -35.97368 -35.18630 -33.17854 -31.99186 -29.06704 -28.35059 -26.98498 -24.82403 -22.63608 -22.30400 -21.89653 -19.90486 -19.48140 -18.57187 -17.99343 -17.27390 -16.90368 -16.49399 -16.07066 -15.69718 -15.46321 -15.15789 -14.68473 -14.47041 -14.26902 -13.91435 -13.72255 -13.59806 -13.48237 -12.84773 -12.80226 -12.71423 -12.54920 -12.53767 -12.32724 -11.68890 -11.66726 -11.64157 -11.33702 -11.14705 -10.55301 -10.44562 -9.81783 -9.71254 -9.27785 -8.18706 -6.30050 -0.08784 0.64228 1.05866 1.42321 1.42489 1.54012 1.56099 1.92819 2.10887 2.42682 3.15070 3.35210 3.55340 4.12363 4.17470 4.21978 4.25118 4.41083 4.53013 4.57572 4.60186 4.76956 4.88187 4.97265 4.99823 5.10718 5.16192 5.18112 5.34795 5.46907 5.47821 5.55034 5.59407 5.72487 5.85512 5.96034 6.23673 6.87465 7.06234 7.39447 7.53454 8.93625 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.035228 B = 0.002267 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.623408 B =12347.751946 C =12620.552080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.116 4.116 3 C -0.209 4.209 4 S 0.103 5.897 5 C -0.211 4.211 6 C 0.216 3.784 7 N -0.729 5.729 8 C 0.700 3.300 9 O -0.638 6.638 10 N -0.729 5.729 11 C 0.150 3.850 12 C -0.100 4.100 13 C 0.023 3.977 14 C -0.539 4.539 15 H 0.067 0.933 16 C -0.005 4.005 17 N -0.935 5.935 18 Si 0.968 3.032 19 H -0.258 1.258 20 H -0.280 1.280 21 H -0.280 1.280 22 C -0.107 4.107 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.184 0.816 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.411 0.589 30 H 0.412 0.588 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.068 0.932 34 H 0.068 0.932 35 H -0.008 1.008 36 H -0.007 1.007 37 H 0.263 0.737 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.896 20.845 11.521 31.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.128 4.128 3 C -0.345 4.345 4 S 0.369 5.631 5 C -0.329 4.329 6 C 0.091 3.909 7 N -0.386 5.386 8 C 0.399 3.601 9 O -0.520 6.520 10 N -0.385 5.385 11 C 0.025 3.975 12 C -0.138 4.138 13 C -0.015 4.015 14 C -0.577 4.577 15 H 0.085 0.915 16 C -0.203 4.203 17 N -0.576 5.576 18 Si 0.793 3.207 19 H -0.182 1.182 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.140 4.140 23 H 0.095 0.905 24 H 0.091 0.909 25 H 0.095 0.905 26 H 0.202 0.798 27 H 0.084 0.916 28 H 0.099 0.901 29 H 0.247 0.753 30 H 0.248 0.752 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.011 0.989 36 H 0.011 0.989 37 H 0.072 0.928 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -18.921 21.070 12.381 30.907 hybrid contribution -0.950 -0.956 -1.265 1.848 sum -19.870 20.114 11.116 30.380 Atomic orbital electron populations 1.20575 0.88054 1.03622 1.03060 1.19202 0.98791 0.91526 1.03320 1.25850 0.95226 1.03500 1.09916 1.84503 1.06950 0.99139 1.72552 1.24274 0.97672 0.97336 1.13593 1.19360 0.95144 0.94064 0.82382 1.45017 1.45053 1.39322 1.09214 1.16107 0.80066 0.80492 0.83403 1.90901 1.58494 1.57919 1.44679 1.45026 1.46429 1.41030 1.05971 1.21092 0.90660 0.89079 0.96681 1.21589 1.00100 0.99757 0.92375 1.18954 0.93573 0.93333 0.95654 1.21706 1.23640 1.19133 0.93196 0.91519 1.26038 0.95464 0.95524 1.03250 1.70120 1.27478 1.23335 1.36628 0.85353 0.78049 0.78143 0.79204 1.18188 1.20615 1.20591 1.20323 0.91983 1.00539 1.01138 0.90519 0.90883 0.90488 0.79827 0.91558 0.90115 0.75304 0.75178 0.93485 0.93384 0.91322 0.91378 0.98927 0.98875 0.92831 0.83191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.72 10.14 71.24 0.72 0.01 16 2 C -0.12 -1.42 5.80 -20.92 -0.12 -1.54 16 3 C -0.21 -2.48 10.98 66.72 0.73 -1.74 16 4 S 0.10 1.51 23.33 -56.49 -1.32 0.19 16 5 C -0.21 -3.42 5.88 24.59 0.14 -3.28 16 6 C 0.22 4.36 6.16 85.64 0.53 4.89 16 7 N -0.73 -15.64 5.55 -482.30 -2.68 -18.32 16 8 C 0.70 21.32 8.57 179.06 1.53 22.85 16 9 O -0.64 -25.61 16.34 -3.99 -0.07 -25.68 16 10 N -0.73 -20.69 5.56 -478.53 -2.66 -23.35 16 11 C 0.15 5.40 5.67 86.38 0.49 5.89 16 12 C -0.10 -3.88 5.27 30.60 0.16 -3.72 16 13 C 0.02 1.18 4.97 29.85 0.15 1.33 16 14 C -0.54 -30.14 9.11 25.60 0.23 -29.91 16 15 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 16 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 17 N -0.94 -57.41 13.29 21.44 0.28 -57.12 16 18 Si 0.97 43.93 29.54 68.60 2.03 45.96 16 19 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 20 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 21 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 22 C -0.11 -1.52 9.85 21.22 0.21 -1.31 16 23 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 24 H 0.07 0.50 8.13 -2.39 -0.02 0.48 16 25 H 0.08 0.42 8.12 -2.39 -0.02 0.40 16 26 H 0.18 1.32 8.06 -2.91 -0.02 1.30 16 27 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.41 6.55 8.48 -92.71 -0.79 5.77 16 30 H 0.41 8.76 8.49 -92.71 -0.79 7.97 16 31 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 32 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 34 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 35 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 36 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 37 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 38 H 0.15 1.83 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -71.92 341.44 0.33 -71.59 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -0.51 Total: 13.10 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: 5.24 Total: -6.37 kcal Atomic # 7 Polarization: -93.74 SS G_CDS: -5.05 Total: -98.80 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.07 Total: -25.68 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -1.32 Total: 0.19 kcal Total: -71.92 0.33 -71.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454439023.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.967 kcal (2) G-P(sol) polarization free energy of solvation -71.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds