Wall clock time and date at job start Tue Mar 31 2020 05:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46669 * 2 1 4 4 C 1.50697 * 109.46786 * 240.00048 * 2 1 3 5 5 H 1.08004 * 119.99884 * 239.99152 * 4 2 1 6 6 C 1.37878 * 120.00163 * 60.00088 * 4 2 1 7 7 N 1.31512 * 120.00084 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99900 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47094 * 89.99687 * 8 6 4 10 10 H 1.48501 * 109.47278 * 209.99770 * 8 6 4 11 11 H 1.48501 * 109.47211 * 329.99923 * 8 6 4 12 12 C 1.52998 * 109.47027 * 119.99509 * 2 1 3 13 13 N 1.46497 * 109.47600 * 300.00107 * 12 2 1 14 14 C 1.34777 * 120.00151 * 179.97438 * 13 12 2 15 15 O 1.21589 * 119.99652 * 0.02562 * 14 13 12 16 16 N 1.34776 * 120.00164 * 179.97438 * 14 13 12 17 17 C 1.46496 * 119.99874 * 180.02562 * 16 14 13 18 18 C 1.50703 * 109.46724 * 180.02562 * 17 16 14 19 19 C 1.38425 * 122.53762 * 90.00099 * 18 17 16 20 20 C 1.33390 * 114.92123 * 179.97438 * 19 18 17 21 21 S 1.75891 * 109.59251 * 0.02562 * 20 19 18 22 22 C 1.33383 * 122.54063 * 269.97373 * 18 17 16 23 23 H 1.09004 * 109.47192 * 300.00297 * 1 2 3 24 24 H 1.09003 * 109.47263 * 60.00357 * 1 2 3 25 25 H 1.09002 * 109.47279 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46871 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.46987 * 299.99812 * 3 2 1 28 28 H 1.08996 * 109.47269 * 59.99841 * 3 2 1 29 29 H 0.96995 * 120.00160 * 179.97438 * 7 6 4 30 30 H 1.09006 * 109.46549 * 180.02562 * 12 2 1 31 31 H 1.09006 * 109.46729 * 60.00733 * 12 2 1 32 32 H 0.97000 * 119.99924 * 0.02562 * 13 12 2 33 33 H 0.97000 * 119.99911 * 0.02562 * 16 14 13 34 34 H 1.08999 * 109.47237 * 60.00275 * 17 16 14 35 35 H 1.09003 * 109.47393 * 299.99862 * 17 16 14 36 36 H 1.07997 * 122.54292 * 359.71157 * 19 18 17 37 37 H 1.08003 * 125.20243 * 179.97438 * 20 19 18 38 38 H 1.08000 * 125.20529 * 0.06732 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3223 -1.1196 -4.0079 9 1 1.3446 -2.1617 -4.4123 10 1 2.4871 -0.1403 -5.1121 11 1 3.6307 -1.7566 -3.7120 12 6 2.0400 -0.7211 1.2493 13 7 1.5517 -0.0305 2.4454 14 6 1.8769 -0.4913 3.6696 15 8 2.5759 -1.4798 3.7811 16 7 1.4281 0.1444 4.7700 17 6 1.7820 -0.3561 6.1005 18 6 1.1583 0.5260 7.1513 19 6 -0.1026 0.2880 7.6704 20 6 -0.5052 1.1636 8.5926 21 16 0.7485 2.3708 8.8469 22 6 1.7797 1.5948 7.6518 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 3.1299 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9564 0.8899 29 1 0.7087 1.1613 -3.4844 30 1 3.1300 -0.7207 1.2494 31 1 1.6767 -1.7489 1.2492 32 1 0.9937 0.7579 2.3564 33 1 0.8707 0.9333 4.6810 34 1 2.8659 -0.3478 6.2154 35 1 1.4122 -1.3750 6.2158 36 1 -0.7158 -0.5412 7.3499 37 1 -1.4560 1.1361 9.1042 38 1 2.7649 1.9329 7.3662 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457690975.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:24 Heat of formation + Delta-G solvation = -3.320054 kcal Electronic energy + Delta-G solvation = -19489.584063 eV Core-core repulsion = 16458.692661 eV Total energy + Delta-G solvation = -3030.891401 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.71602 -38.39964 -36.40518 -34.09134 -33.19601 -30.91912 -29.97518 -27.00998 -25.69603 -25.44765 -24.53438 -22.97790 -20.57687 -19.21550 -18.74695 -18.28139 -17.62045 -16.05392 -15.80892 -15.34482 -15.00011 -14.69237 -13.98198 -13.70221 -13.56743 -13.26998 -13.01055 -12.83363 -12.79442 -12.23739 -12.13583 -12.10154 -11.34705 -11.17396 -11.03947 -10.84188 -10.67163 -10.35609 -10.19074 -9.81872 -9.60172 -9.29776 -9.11638 -8.95368 -8.77166 -8.72164 -8.39168 -8.15314 -6.00091 -4.09916 0.68539 1.35690 1.67769 2.26843 3.29881 3.34133 3.36965 3.42424 3.67664 4.40968 4.59611 4.71452 4.83580 5.09792 5.18305 5.26719 5.43231 5.66684 5.74831 6.09718 6.21102 6.24478 6.39928 6.53594 6.64761 6.83108 6.85849 6.94108 7.06129 7.13374 7.34145 7.45152 7.58676 7.72128 8.03836 8.15195 8.40883 8.52015 8.90131 9.07819 9.55777 11.01371 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.040898 B = 0.002899 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.463112 B = 9655.308609 C = 9907.965242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.505 4.505 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.150 3.850 13 N -0.733 5.733 14 C 0.698 3.302 15 O -0.600 6.600 16 N -0.750 5.750 17 C 0.202 3.798 18 C -0.121 4.121 19 C -0.121 4.121 20 C -0.215 4.215 21 S 0.096 5.904 22 C -0.190 4.190 23 H 0.005 0.995 24 H 0.085 0.915 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.085 0.915 28 H 0.006 0.994 29 H 0.259 0.741 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.393 0.607 33 H 0.394 0.606 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.143 0.857 37 H 0.165 0.835 38 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.155 4.438 20.528 21.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.187 4.187 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.027 3.973 13 N -0.387 5.387 14 C 0.397 3.603 15 O -0.480 6.480 16 N -0.408 5.408 17 C 0.075 3.925 18 C -0.134 4.134 19 C -0.151 4.151 20 C -0.350 4.350 21 S 0.359 5.641 22 C -0.326 4.326 23 H 0.024 0.976 24 H 0.103 0.897 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.103 0.897 28 H 0.025 0.975 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.228 0.772 33 H 0.228 0.772 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.161 0.839 37 H 0.182 0.818 38 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -2.438 4.899 21.397 22.086 hybrid contribution -0.411 -0.892 -1.761 2.017 sum -2.849 4.007 19.636 20.242 Atomic orbital electron populations 1.21821 0.97801 0.99143 0.99984 1.18360 0.92779 0.92769 0.90564 1.21817 0.98569 0.98376 0.99981 1.21000 1.31396 1.12075 0.89888 0.92398 1.24879 0.94896 0.94920 0.98839 1.69805 1.36775 1.22778 1.23176 0.86573 0.79342 0.79375 0.82587 1.20725 1.21299 1.19889 1.21581 0.97862 0.95410 0.82402 1.45504 1.55598 1.33037 1.04571 1.16068 0.80548 0.82983 0.80660 1.90885 1.43189 1.27780 1.86109 1.45153 1.57718 1.33450 1.04430 1.19621 0.99097 0.95503 0.78271 1.19042 0.95487 0.97881 1.00957 1.20150 0.96034 1.01166 0.97789 1.25616 1.03836 1.00114 1.05414 1.84336 1.09136 1.30122 1.40461 1.25652 1.04568 1.00084 1.02327 0.97557 0.89669 0.95466 0.95461 0.89679 0.97547 0.93046 0.92976 0.92969 0.77203 0.77234 0.90975 0.90839 0.83911 0.81768 0.81521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 2 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 3 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 4 C -0.50 -13.33 8.01 -34.44 -0.28 -13.60 16 5 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 7 N -0.89 -23.72 9.35 55.43 0.52 -23.20 16 8 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 12 C 0.15 3.27 4.50 -4.04 -0.02 3.25 16 13 N -0.73 -13.35 4.96 -65.22 -0.32 -13.67 16 14 C 0.70 12.56 8.57 -86.92 -0.74 11.81 16 15 O -0.60 -13.17 16.34 5.29 0.09 -13.08 16 16 N -0.75 -9.99 5.55 -66.41 -0.37 -10.36 16 17 C 0.20 2.36 5.92 -5.19 -0.03 2.33 16 18 C -0.12 -1.16 5.17 -106.25 -0.55 -1.71 16 19 C -0.12 -1.06 9.98 -41.21 -0.41 -1.47 16 20 C -0.21 -1.66 11.23 29.04 0.33 -1.33 16 21 S 0.10 0.74 23.34 -107.50 -2.51 -1.77 16 22 C -0.19 -1.66 10.98 29.04 0.32 -1.34 16 23 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 24 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 28 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 29 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 30 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.39 6.44 6.18 -40.82 -0.25 6.19 16 33 H 0.39 4.43 8.48 -40.82 -0.35 4.08 16 34 H 0.07 0.88 8.12 -51.93 -0.42 0.46 16 35 H 0.07 0.90 8.13 -51.93 -0.42 0.47 16 36 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 37 H 0.16 0.92 8.06 -52.48 -0.42 0.50 16 38 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 326.14 15.07 4.91 4.91 Total: -1.00 -29.49 326.14 -8.94 -38.43 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -5.29 Total: 7.41 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -0.95 Total: -4.47 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: -0.17 Total: -47.23 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.09 Total: -13.08 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 0.74 SS G_CDS: -2.51 Total: -1.77 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.49 -8.94 -38.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457690975.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.111 kcal (2) G-P(sol) polarization free energy of solvation -29.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds