Wall clock time and date at job start Tue Mar 31 2020 05:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.47232 * 2 1 4 4 N 1.30947 * 122.90369 * 269.99811 * 3 2 1 5 5 C 1.29422 * 117.36060 * 180.02562 * 4 3 2 6 6 S 1.70948 * 110.39485 * 359.72725 * 5 4 3 7 7 C 1.35660 * 122.90232 * 90.00257 * 3 2 1 8 8 C 1.46680 * 126.13148 * 359.97438 * 7 3 2 9 9 O 1.21683 * 120.00091 * 0.02562 * 8 7 3 10 10 N 1.34777 * 119.99703 * 179.97438 * 8 7 3 11 11 C 1.46499 * 119.99665 * 179.72441 * 10 8 7 12 12 C 1.53004 * 109.47198 * 180.27868 * 11 10 8 13 13 C 1.52998 * 109.46876 * 299.99984 * 12 11 10 14 14 C 1.53005 * 109.46795 * 60.00011 * 12 11 10 15 15 C 1.50700 * 109.47208 * 180.02562 * 12 11 10 16 16 H 1.08002 * 119.99770 * 359.97438 * 15 12 11 17 17 C 1.37876 * 119.99720 * 179.97438 * 15 12 11 18 18 N 1.31514 * 120.00513 * 0.02562 * 17 15 12 19 19 Si 1.86809 * 119.99651 * 179.97438 * 17 15 12 20 20 H 1.48491 * 109.47115 * 89.99974 * 19 17 15 21 21 H 1.48509 * 109.46780 * 210.00159 * 19 17 15 22 22 H 1.48497 * 109.46888 * 329.99916 * 19 17 15 23 23 H 1.08997 * 109.47373 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47079 * 299.99849 * 1 2 3 25 25 H 1.09001 * 109.47072 * 59.99991 * 1 2 3 26 26 H 1.09007 * 109.46665 * 239.99853 * 2 1 3 27 27 H 1.08998 * 109.46905 * 120.00760 * 2 1 3 28 28 H 1.08009 * 124.80161 * 179.97438 * 5 4 3 29 29 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 30 30 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 31 31 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 32 32 H 1.08996 * 109.47009 * 60.00253 * 13 12 11 33 33 H 1.09004 * 109.46783 * 179.97438 * 13 12 11 34 34 H 1.08998 * 109.47156 * 300.00070 * 13 12 11 35 35 H 1.09000 * 109.47011 * 60.00556 * 14 12 11 36 36 H 1.09004 * 109.46658 * 180.02562 * 14 12 11 37 37 H 1.08996 * 109.47069 * 299.99740 * 14 12 11 38 38 H 0.96999 * 120.00239 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2695 2.0914 -1.0994 5 6 2.6994 3.3057 -0.9744 6 16 2.8388 3.7212 0.6780 7 6 2.2780 2.1155 1.1390 8 6 2.1026 1.6209 2.5087 9 8 1.7020 0.4879 2.6998 10 7 2.3862 2.4209 3.5556 11 6 2.2053 1.9289 4.9235 12 6 2.5890 3.0284 5.9159 13 6 4.0531 3.4187 5.7038 14 6 1.6974 4.2515 5.6917 15 6 2.4034 2.5221 7.3232 16 1 2.0471 1.5168 7.4927 17 6 2.6887 3.3423 8.3941 18 7 3.1221 4.5667 8.1876 19 14 2.4580 2.7149 10.1385 20 1 3.7166 2.0813 10.6071 21 1 2.1130 3.8503 11.0313 22 1 1.3609 1.7144 10.1636 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 2.9330 3.9648 -1.7976 29 1 2.7059 3.3240 3.4033 30 1 1.1621 1.6509 5.0748 31 1 2.8403 1.0576 5.0833 32 1 4.1876 3.7848 4.6860 33 1 4.3263 4.2023 6.4105 34 1 4.6881 2.5473 5.8634 35 1 0.6544 3.9735 5.8429 36 1 1.9711 5.0350 6.3984 37 1 1.8321 4.6176 4.6739 38 1 3.3231 5.1436 8.9411 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457998098.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:20 Heat of formation + Delta-G solvation = -6.337794 kcal Electronic energy + Delta-G solvation = -20106.549285 eV Core-core repulsion = 17075.527025 eV Total energy + Delta-G solvation = -3031.022261 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.36855 -38.90288 -36.41462 -33.59690 -33.24158 -31.12219 -29.71918 -26.48905 -25.77669 -25.52694 -24.75647 -23.23302 -21.44293 -19.44290 -18.74616 -18.32630 -16.78029 -15.96613 -15.49073 -15.32781 -14.75478 -14.44185 -14.38110 -14.08015 -13.81915 -13.33773 -12.96074 -12.81764 -12.43440 -12.25726 -11.93637 -11.44972 -11.30804 -11.22482 -10.91440 -10.84098 -10.72037 -10.43839 -10.23663 -10.01714 -9.69136 -9.63466 -9.61221 -9.34302 -8.97231 -8.83904 -8.52692 -8.37566 -6.05367 -4.15663 0.20762 1.12351 1.50368 2.43990 3.26590 3.33724 3.36979 3.37467 3.55468 4.04231 4.37713 4.86269 4.92817 5.14432 5.21606 5.40821 5.47155 5.50439 5.95622 5.99935 6.14852 6.25302 6.25593 6.34768 6.44591 6.69087 6.77065 6.86289 6.91523 6.96399 7.29598 7.49180 7.50696 7.65607 7.88780 7.95985 8.09176 8.32990 8.49387 8.84705 9.50412 10.96144 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.029543 B = 0.004187 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.550521 B = 6686.048670 C = 7360.311576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.059 4.059 3 C 0.137 3.863 4 N -0.473 5.473 5 C 0.025 3.975 6 S 0.163 5.837 7 C -0.280 4.280 8 C 0.584 3.416 9 O -0.529 6.529 10 N -0.708 5.708 11 C 0.132 3.868 12 C 0.055 3.945 13 C -0.131 4.131 14 C -0.131 4.131 15 C -0.506 4.506 16 H 0.058 0.942 17 C 0.067 3.933 18 N -0.886 5.886 19 Si 0.894 3.106 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 H 0.062 0.938 24 H 0.058 0.942 25 H 0.050 0.950 26 H 0.075 0.925 27 H 0.106 0.894 28 H 0.204 0.796 29 H 0.396 0.604 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.004 0.996 33 H 0.087 0.913 34 H 0.028 0.972 35 H 0.028 0.972 36 H 0.087 0.913 37 H 0.004 0.996 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.463 -0.130 -15.832 15.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.099 4.099 3 C 0.000 4.000 4 N -0.187 5.187 5 C -0.270 4.270 6 S 0.417 5.583 7 C -0.404 4.404 8 C 0.368 3.632 9 O -0.409 6.409 10 N -0.359 5.359 11 C 0.010 3.990 12 C 0.054 3.946 13 C -0.189 4.189 14 C -0.189 4.189 15 C -0.545 4.545 16 H 0.076 0.924 17 C -0.135 4.135 18 N -0.524 5.524 19 Si 0.722 3.278 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.094 0.906 27 H 0.125 0.875 28 H 0.220 0.780 29 H 0.231 0.769 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.023 0.977 33 H 0.105 0.895 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.105 0.895 37 H 0.023 0.977 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.429 0.003 -15.571 15.577 hybrid contribution -0.133 -0.425 0.722 0.849 sum -0.562 -0.423 -14.849 14.865 Atomic orbital electron populations 1.21593 0.93970 1.02047 1.01766 1.20408 0.96678 0.88358 1.04422 1.20712 0.96041 0.98337 0.84942 1.66099 1.15000 1.06180 1.31410 1.28658 1.01730 0.96130 1.00501 1.84107 1.58856 1.12239 1.03059 1.25760 1.16485 0.98413 0.99778 1.16727 0.78591 0.85514 0.82346 1.90756 1.47022 1.18260 1.84875 1.46273 1.65788 1.16593 1.07199 1.21820 1.00584 0.98687 0.77930 1.18378 0.92646 0.90691 0.92838 1.21843 0.97862 1.01580 0.97634 1.21843 0.98259 1.01205 0.97615 1.20957 1.44578 0.99473 0.89459 0.92358 1.24875 0.94742 0.94807 0.99028 1.69797 1.45061 1.06795 1.30751 0.86563 0.78535 0.78430 0.84298 1.20696 1.21255 1.19880 0.91916 0.92262 0.93122 0.90623 0.87544 0.77959 0.76862 0.92270 0.92263 0.97656 0.89452 0.95317 0.95310 0.89453 0.97654 0.92963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.89 37.16 0.37 -1.32 16 2 C -0.06 -0.79 5.75 -27.88 -0.16 -0.95 16 3 C 0.14 1.97 6.04 -83.89 -0.51 1.46 16 4 N -0.47 -6.17 10.50 -11.53 -0.12 -6.29 16 5 C 0.03 0.26 12.22 51.75 0.63 0.89 16 6 S 0.16 1.82 22.35 -107.50 -2.40 -0.58 16 7 C -0.28 -4.18 6.48 -37.10 -0.24 -4.42 16 8 C 0.58 10.36 7.78 -12.85 -0.10 10.26 16 9 O -0.53 -10.53 14.27 5.20 0.07 -10.45 16 10 N -0.71 -12.77 4.95 -61.62 -0.31 -13.08 16 11 C 0.13 2.75 4.50 -4.04 -0.02 2.73 16 12 C 0.06 1.26 0.50 -155.66 -0.08 1.18 16 13 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 14 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 15 C -0.51 -13.01 8.01 -34.44 -0.28 -13.29 16 16 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 17 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 18 N -0.89 -23.22 9.35 55.43 0.52 -22.70 16 19 Si 0.89 20.44 29.54 -169.99 -5.02 15.41 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.08 0.90 8.14 -51.92 -0.42 0.47 16 27 H 0.11 1.60 6.01 -51.93 -0.31 1.29 16 28 H 0.20 1.20 8.06 -52.48 -0.42 0.77 16 29 H 0.40 6.61 5.35 -40.82 -0.22 6.39 16 30 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 31 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 33 H 0.09 2.14 6.07 -51.93 -0.32 1.83 16 34 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 2.14 6.07 -51.93 -0.32 1.83 16 37 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 38 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 LS Contribution 321.24 15.07 4.84 4.84 Total: -1.00 -28.07 321.24 -7.51 -35.57 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -5.22 Total: 4.34 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: 0.13 Total: -7.07 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: 0.09 Total: -42.06 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.07 Total: -10.45 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 16 Polarization: 1.82 SS G_CDS: -2.40 Total: -0.58 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.07 -7.51 -35.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457998098.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.235 kcal (2) G-P(sol) polarization free energy of solvation -28.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds