Wall clock time and date at job start Tue Mar 31 2020 05:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47233 * 2 1 4 4 C 1.50702 * 109.47107 * 240.00021 * 2 1 3 5 5 H 1.08004 * 120.00003 * 241.36309 * 4 2 1 6 6 C 1.37876 * 120.00106 * 61.35962 * 4 2 1 7 7 N 1.31516 * 120.00140 * 193.96405 * 6 4 2 8 8 Si 1.86805 * 119.99811 * 13.96360 * 6 4 2 9 9 H 1.48501 * 109.46967 * 84.55307 * 8 6 4 10 10 H 1.48497 * 109.46762 * 204.55328 * 8 6 4 11 11 H 1.48495 * 109.47000 * 324.55572 * 8 6 4 12 12 C 1.53004 * 109.46897 * 119.99917 * 2 1 3 13 13 N 1.46894 * 109.47371 * 299.99812 * 12 2 1 14 14 C 1.46900 * 111.00086 * 179.97438 * 13 12 2 15 15 C 1.50700 * 109.47101 * 180.02562 * 14 13 12 16 16 C 1.32775 * 124.71184 * 90.00249 * 15 14 13 17 17 C 1.44423 * 113.08264 * 179.76691 * 16 15 14 18 18 C 1.47194 * 123.46107 * 180.31619 * 17 16 15 19 19 N 1.34781 * 119.99502 * 180.18829 * 18 17 16 20 20 O 1.21628 * 120.00176 * 0.19531 * 18 17 16 21 21 C 1.36008 * 113.07965 * 0.46769 * 17 16 15 22 22 S 1.70454 * 110.81581 * 359.54859 * 21 17 16 23 23 H 1.08996 * 109.47060 * 309.31546 * 1 2 3 24 24 H 1.08998 * 109.47117 * 69.31877 * 1 2 3 25 25 H 1.09004 * 109.47133 * 189.31283 * 1 2 3 26 26 H 1.08996 * 109.47460 * 179.97438 * 3 2 1 27 27 H 1.08996 * 109.47321 * 300.00293 * 3 2 1 28 28 H 1.08998 * 109.47170 * 59.99783 * 3 2 1 29 29 H 0.96998 * 119.99579 * 180.02562 * 7 6 4 30 30 H 1.09003 * 109.46654 * 179.97438 * 12 2 1 31 31 H 1.08995 * 109.46856 * 60.00401 * 12 2 1 32 32 H 1.00898 * 110.99905 * 303.96047 * 13 12 2 33 33 H 1.08997 * 109.46793 * 60.00148 * 14 13 12 34 34 H 1.08997 * 109.47422 * 300.00219 * 14 13 12 35 35 H 1.07997 * 123.45885 * 0.02562 * 16 15 14 36 36 H 0.96996 * 120.00776 * 0.02562 * 19 18 17 37 37 H 0.97000 * 119.98988 * 180.02562 * 19 18 17 38 38 H 1.08002 * 124.59612 * 179.81044 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6350 -1.6012 -1.1315 6 6 1.7226 -0.2232 -2.4825 7 7 1.9162 -0.9723 -3.5461 8 14 1.0278 1.5008 -2.6683 9 1 2.1419 2.4818 -2.7080 10 1 0.2474 1.5867 -3.9287 11 1 0.1419 1.8043 -1.5158 12 6 2.0400 -0.7213 1.2493 13 7 1.5504 -0.0288 2.4487 14 6 2.0209 -0.6953 3.6703 15 6 1.4993 0.0414 4.8771 16 6 0.3464 -0.2192 5.4821 17 6 0.0970 0.6368 6.6182 18 6 -1.1086 0.5412 7.4572 19 7 -1.2720 1.3794 8.5000 20 8 -1.9573 -0.2941 7.2095 21 6 1.0891 1.5425 6.8314 22 16 2.3311 1.3632 5.6778 23 1 -0.3633 0.6511 0.7950 24 1 -0.3633 0.3629 -0.9614 25 1 -0.3633 -1.0142 0.1663 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6767 1.9563 0.8899 29 1 1.6986 -0.6294 -4.4269 30 1 3.1300 -0.7216 1.2490 31 1 1.6767 -1.7489 1.2492 32 1 1.8198 0.9435 2.4401 33 1 3.1107 -0.6955 3.6873 34 1 1.6570 -1.7226 3.6869 35 1 -0.3330 -0.9946 5.1603 36 1 -0.5954 2.0458 8.6974 37 1 -2.0664 1.3161 9.0531 38 1 1.0918 2.2732 7.6266 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459725488.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:22 Heat of formation + Delta-G solvation = 3.802174 kcal Electronic energy + Delta-G solvation = -19502.244634 eV Core-core repulsion = 16471.662075 eV Total energy + Delta-G solvation = -3030.582559 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.87130 -37.73558 -36.78357 -34.41536 -33.77255 -31.68986 -29.97788 -26.29109 -26.08256 -25.16491 -24.90573 -23.17887 -21.02490 -19.43600 -18.81938 -18.23087 -17.13969 -16.53077 -16.01794 -15.65647 -15.07294 -14.99362 -14.58021 -14.12677 -13.77923 -13.45986 -12.98261 -12.86777 -12.64271 -12.44737 -12.34336 -12.04028 -11.93050 -11.70153 -11.14962 -10.88829 -10.32126 -10.23866 -10.08308 -10.00840 -10.00023 -9.82209 -9.07433 -8.92902 -8.62502 -8.56443 -8.37002 -7.94740 -6.07595 -4.03440 0.53358 1.32683 1.73597 1.87299 3.18303 3.26331 3.32005 3.41590 3.45791 4.42764 4.44593 4.69437 4.78639 4.96863 5.17282 5.25543 5.32418 5.62241 5.75121 5.95160 6.07285 6.11134 6.21576 6.24585 6.44047 6.47186 6.57389 6.75600 6.81590 6.94406 7.01845 7.06847 7.40188 7.42153 7.59024 7.78279 7.90245 7.99680 8.54881 8.96886 9.58519 11.05837 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.028721 B = 0.003567 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.670585 B = 7848.026162 C = 8057.537703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.041 3.959 3 C -0.150 4.150 4 C -0.513 4.513 5 H 0.072 0.928 6 C 0.074 3.926 7 N -0.896 5.896 8 Si 0.884 3.116 9 H -0.288 1.288 10 H -0.307 1.307 11 H -0.245 1.245 12 C 0.084 3.916 13 N -0.684 5.684 14 C 0.127 3.873 15 C -0.184 4.184 16 C -0.074 4.074 17 C -0.155 4.155 18 C 0.583 3.417 19 N -0.853 5.853 20 O -0.536 6.536 21 C -0.220 4.220 22 S 0.188 5.812 23 H 0.032 0.968 24 H 0.044 0.956 25 H 0.041 0.959 26 H 0.046 0.954 27 H 0.040 0.960 28 H 0.033 0.967 29 H 0.263 0.737 30 H 0.023 0.977 31 H 0.068 0.932 32 H 0.337 0.663 33 H 0.038 0.962 34 H 0.092 0.908 35 H 0.156 0.844 36 H 0.399 0.601 37 H 0.404 0.596 38 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.170 7.609 23.943 25.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.040 3.960 3 C -0.207 4.207 4 C -0.551 4.551 5 H 0.090 0.910 6 C -0.128 4.128 7 N -0.534 5.534 8 Si 0.717 3.283 9 H -0.216 1.216 10 H -0.236 1.236 11 H -0.171 1.171 12 C -0.044 4.044 13 N -0.317 5.317 14 C -0.004 4.004 15 C -0.301 4.301 16 C -0.103 4.103 17 C -0.174 4.174 18 C 0.367 3.633 19 N -0.417 5.417 20 O -0.414 6.414 21 C -0.358 4.358 22 S 0.455 5.545 23 H 0.051 0.949 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.042 0.958 31 H 0.086 0.914 32 H 0.156 0.844 33 H 0.056 0.944 34 H 0.110 0.890 35 H 0.173 0.827 36 H 0.227 0.773 37 H 0.235 0.765 38 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 0.506 7.383 23.167 24.320 hybrid contribution -0.711 0.970 0.432 1.278 sum -0.205 8.352 23.599 25.034 Atomic orbital electron populations 1.22078 0.97343 0.99826 0.99258 1.18474 0.92985 0.91465 0.93069 1.22371 1.00318 0.99160 0.98827 1.20857 1.33675 1.12080 0.88504 0.91033 1.24973 0.94665 0.97337 0.95833 1.69964 1.48753 1.35977 0.98679 0.87314 0.79387 0.85556 0.76075 1.21618 1.23551 1.17123 1.22007 0.96139 0.98078 0.88192 1.60663 1.63859 1.06356 1.00777 1.20422 0.96582 0.97624 0.85814 1.24441 0.99736 1.02723 1.03174 1.21028 0.96176 0.99960 0.93089 1.20181 0.96617 1.00429 1.00189 1.17665 0.85357 0.80409 0.79845 1.43686 1.26828 1.38438 1.32753 1.90853 1.43881 1.36073 1.70557 1.25565 1.00226 1.04227 1.05815 1.83115 1.20214 1.30540 1.20669 0.94893 0.93770 0.94013 0.93526 0.94147 0.94790 0.92727 0.95846 0.91374 0.84407 0.94380 0.89033 0.82677 0.77264 0.76454 0.81600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 7.55 37.16 0.28 -2.57 16 2 C 0.04 0.93 0.57 -155.66 -0.09 0.84 16 3 C -0.15 -3.15 7.36 37.16 0.27 -2.87 16 4 C -0.51 -14.05 8.62 -34.44 -0.30 -14.35 16 5 H 0.07 2.12 7.99 -52.48 -0.42 1.70 16 6 C 0.07 2.11 5.32 -17.82 -0.09 2.01 16 7 N -0.90 -27.38 13.96 55.43 0.77 -26.60 16 8 Si 0.88 21.93 22.79 -169.99 -3.87 18.06 16 9 H -0.29 -7.07 7.10 56.52 0.40 -6.67 16 10 H -0.31 -7.77 7.11 56.52 0.40 -7.37 16 11 H -0.25 -5.69 4.65 56.52 0.26 -5.43 16 12 C 0.08 1.60 4.57 -3.83 -0.02 1.58 16 13 N -0.68 -10.94 5.88 -115.06 -0.68 -11.62 16 14 C 0.13 1.66 6.15 -4.98 -0.03 1.63 16 15 C -0.18 -2.20 5.95 -36.18 -0.22 -2.41 16 16 C -0.07 -0.94 9.95 -39.02 -0.39 -1.33 16 17 C -0.15 -1.72 5.98 -104.63 -0.63 -2.35 16 18 C 0.58 6.75 8.06 -12.62 -0.10 6.64 16 19 N -0.85 -5.67 8.84 30.38 0.27 -5.40 16 20 O -0.54 -8.54 17.63 5.25 0.09 -8.45 16 21 C -0.22 -1.83 10.38 29.93 0.31 -1.52 16 22 S 0.19 1.73 23.00 -107.50 -2.47 -0.75 16 23 H 0.03 0.67 7.88 -51.93 -0.41 0.26 16 24 H 0.04 1.04 4.30 -51.93 -0.22 0.81 16 25 H 0.04 0.92 8.12 -51.93 -0.42 0.50 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.04 0.91 2.25 -51.93 -0.12 0.79 16 28 H 0.03 0.61 6.57 -51.93 -0.34 0.27 16 29 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.34 5.22 6.76 -39.29 -0.27 4.96 16 33 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.16 2.12 8.06 -52.49 -0.42 1.70 16 36 H 0.40 1.42 7.33 -40.82 -0.30 1.12 16 37 H 0.40 2.16 8.93 -40.82 -0.36 1.79 16 38 H 0.17 0.76 7.01 -52.49 -0.37 0.40 16 LS Contribution 315.65 15.07 4.76 4.76 Total: -1.00 -33.17 315.65 -7.17 -40.33 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -5.04 Total: 4.36 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: -0.99 Total: -14.69 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: 0.37 Total: -43.62 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.09 Total: -8.45 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -3.87 Total: 18.06 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -2.47 Total: -0.75 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.17 -7.17 -40.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459725488.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.136 kcal (2) G-P(sol) polarization free energy of solvation -33.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds