Wall clock time and date at job start Tue Mar 31 2020 06:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47199 * 308.81393 * 3 2 1 5 5 C 1.36936 * 120.00160 * 264.35505 * 4 3 2 6 6 H 1.07995 * 120.00213 * 196.60022 * 5 4 3 7 7 C 1.38820 * 119.99863 * 16.59969 * 5 4 3 8 8 N 1.31615 * 120.00013 * 22.37924 * 7 5 4 9 9 Si 1.86799 * 119.99848 * 202.38079 * 7 5 4 10 10 H 1.48491 * 109.47087 * 59.99981 * 9 7 5 11 11 H 1.48497 * 109.46960 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46975 * 300.00040 * 9 7 5 13 13 C 1.46495 * 119.99892 * 84.35334 * 4 3 2 14 14 C 1.50700 * 109.47241 * 270.00046 * 13 4 3 15 15 O 1.21394 * 120.00222 * 0.02562 * 14 13 4 16 16 C 1.41734 * 119.99769 * 180.02562 * 14 13 4 17 17 C 1.37864 * 126.91457 * 359.97438 * 16 14 13 18 18 N 1.34669 * 109.61838 * 179.97438 * 17 16 14 19 19 H 0.97000 * 124.63683 * 179.97438 * 18 17 16 20 20 C 1.38012 * 110.71272 * 0.02562 * 18 17 16 21 21 C 1.39140 * 133.04122 * 179.97438 * 20 18 17 22 22 C 1.37776 * 119.94895 * 179.97438 * 21 20 18 23 23 C 1.38720 * 120.63616 * 359.97438 * 22 21 20 24 24 C 1.37800 * 120.27072 * 0.02638 * 23 22 21 25 25 C 1.39183 * 119.67011 * 359.97191 * 24 23 22 26 26 H 4.40638 * 5.51372 * 179.97438 * 4 1 2 27 27 H 1.08999 * 109.46616 * 188.81480 * 3 2 1 28 28 H 1.08999 * 109.47178 * 68.81656 * 3 2 1 29 29 H 0.96998 * 119.99926 * 179.97438 * 8 7 5 30 30 H 1.09000 * 109.47171 * 149.99691 * 13 4 3 31 31 H 1.09005 * 109.47139 * 30.00128 * 13 4 3 32 32 H 1.08003 * 125.18886 * 359.97438 * 17 16 14 33 33 H 1.08006 * 120.02839 * 0.25498 * 21 20 18 34 34 H 1.07999 * 119.68103 * 179.97438 * 22 21 20 35 35 H 1.08002 * 119.86680 * 179.97438 * 23 22 21 36 36 H 1.08005 * 120.16283 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.8648 1.0762 5 6 3.4727 -0.3254 2.2886 6 1 4.0742 -0.8928 2.9833 7 6 3.0422 0.9508 2.6247 8 7 1.9889 1.4682 2.0288 9 14 3.9578 1.9337 3.9228 10 1 5.3651 2.1316 3.4925 11 1 3.3024 3.2549 4.0969 12 1 3.9331 1.1958 5.2112 13 6 3.2619 -2.3075 0.8553 14 6 1.9725 -2.9893 1.2345 15 8 1.0382 -2.3339 1.6484 16 6 1.8507 -4.3957 1.1078 17 6 2.8136 -5.2729 0.6562 18 7 2.3277 -6.5286 0.6790 19 1 2.8231 -7.3165 0.4057 20 6 1.0281 -6.5408 1.1433 21 6 0.1035 -7.5595 1.3514 22 6 -1.1507 -7.2613 1.8376 23 6 -1.5046 -5.9510 2.1242 24 6 -0.6027 -4.9284 1.9248 25 6 0.6676 -5.2160 1.4341 26 1 -1.0498 0.0000 0.0003 27 1 3.0088 1.0164 0.1575 28 1 3.0095 -0.3705 -0.9582 29 1 1.6878 2.3598 2.2639 30 1 4.0737 -2.6988 1.4684 31 1 3.4772 -2.4965 -0.1964 32 1 3.8062 -4.9953 0.3335 33 1 0.3702 -8.5837 1.1362 34 1 -1.8651 -8.0553 1.9971 35 1 -2.4913 -5.7313 2.5045 36 1 -0.8803 -3.9088 2.1482 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491662538.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:47 Heat of formation + Delta-G solvation = 118.621118 kcal Electronic energy + Delta-G solvation = -21223.157995 eV Core-core repulsion = 18062.110408 eV Total energy + Delta-G solvation = -3161.047587 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.28203 -38.06479 -36.85027 -35.37371 -31.93966 -31.34489 -31.10599 -29.50627 -29.26383 -26.79447 -25.76843 -23.12012 -22.87081 -21.69233 -21.00445 -18.44396 -17.55100 -17.28399 -16.40962 -16.12286 -15.42664 -14.96038 -14.74332 -14.71534 -13.88622 -13.80168 -13.74173 -13.61199 -13.03238 -12.69912 -12.60009 -12.16161 -11.65899 -11.49141 -11.33243 -11.15073 -10.85696 -10.79532 -10.62293 -10.20436 -9.91246 -9.47557 -8.90675 -8.63886 -8.51084 -8.23739 -8.16148 -7.57293 -6.86374 -5.64860 -3.06390 1.08565 1.64475 2.16734 3.04201 3.45315 3.51027 3.51910 3.76651 4.19290 4.40505 4.62055 4.73035 4.77409 4.80049 5.00546 5.18131 5.28795 5.36870 5.51361 5.62149 5.74815 5.78841 5.84329 6.06952 6.18722 6.23038 6.36218 6.50341 6.61370 6.62565 6.76345 6.81650 7.00538 7.20812 7.34348 7.41559 7.64441 7.83878 8.36762 8.84637 9.21570 9.50567 9.87279 10.32221 11.38096 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.023023 B = 0.004687 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.878249 B = 5971.969237 C = 6168.096259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 C -0.094 4.094 3 C 0.270 3.730 4 N -0.568 5.568 5 C -0.264 4.264 6 H 0.074 0.926 7 C 0.007 3.993 8 N -0.879 5.879 9 Si 0.899 3.101 10 H -0.284 1.284 11 H -0.292 1.292 12 H -0.285 1.285 13 C 0.105 3.895 14 C 0.365 3.635 15 O -0.417 6.417 16 C -0.243 4.243 17 C 0.108 3.892 18 N -0.578 5.578 19 H 0.415 0.585 20 C 0.075 3.925 21 C -0.131 4.131 22 C -0.106 4.106 23 C -0.146 4.146 24 C -0.061 4.061 25 C -0.065 4.065 26 H 0.184 0.816 27 H 0.096 0.904 28 H 0.033 0.967 29 H 0.253 0.747 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.183 0.817 33 H 0.117 0.883 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.638 -17.560 -5.014 18.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 C -0.097 4.097 3 C 0.145 3.855 4 N -0.286 5.286 5 C -0.393 4.393 6 H 0.091 0.909 7 C -0.193 4.193 8 N -0.522 5.522 9 Si 0.729 3.271 10 H -0.211 1.211 11 H -0.218 1.218 12 H -0.211 1.211 13 C -0.023 4.023 14 C 0.237 3.763 15 O -0.289 6.289 16 C -0.252 4.252 17 C -0.025 4.025 18 N -0.179 5.179 19 H 0.252 0.748 20 C -0.030 4.030 21 C -0.152 4.152 22 C -0.125 4.125 23 C -0.165 4.165 24 C -0.079 4.079 25 C -0.069 4.069 26 H 0.201 0.799 27 H 0.114 0.886 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.200 0.800 33 H 0.135 0.865 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.168 -17.071 -4.777 17.728 hybrid contribution 0.203 -0.030 0.805 0.831 sum 0.371 -17.101 -3.972 17.560 Atomic orbital electron populations 1.23963 0.95144 1.05580 1.06373 1.24013 0.95070 0.95758 0.94883 1.17834 0.83179 0.96659 0.87797 1.44103 1.73745 0.99113 1.11679 1.19103 1.26360 0.98613 0.95267 0.90860 1.24902 0.96227 0.99522 0.98627 1.70175 1.21122 1.16395 1.44466 0.86430 0.79576 0.79596 0.81544 1.21056 1.21781 1.21138 1.21351 0.94818 0.86680 0.99492 1.22119 0.92116 0.85648 0.76402 1.90588 1.39486 1.67081 1.31756 1.20827 0.94026 0.96603 1.13765 1.22518 0.98917 0.82729 0.98288 1.41361 1.11689 1.08688 1.56163 0.74787 1.18295 0.85686 0.95800 1.03227 1.19953 0.93220 0.96629 1.05383 1.20748 0.95378 0.96672 0.99734 1.20972 0.99772 0.92541 1.03231 1.20786 0.91238 1.00134 0.95744 1.19068 0.94542 0.91391 1.01855 0.79900 0.88599 0.94889 0.93661 0.90597 0.91452 0.79964 0.86533 0.85969 0.86005 0.84879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -7.39 18.78 29.55 0.56 -6.84 16 2 C -0.09 -2.47 10.03 -37.12 -0.37 -2.84 16 3 C 0.27 6.62 5.45 -6.83 -0.04 6.58 16 4 N -0.57 -14.08 2.09 -177.95 -0.37 -14.45 16 5 C -0.26 -7.24 9.66 -15.06 -0.15 -7.38 16 6 H 0.07 1.96 7.90 -52.49 -0.41 1.54 16 7 C 0.01 0.20 4.85 -17.43 -0.08 0.11 16 8 N -0.88 -26.02 9.49 55.49 0.53 -25.49 16 9 Si 0.90 21.98 29.61 -169.99 -5.03 16.94 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 C 0.11 2.07 5.46 -5.20 -0.03 2.04 16 14 C 0.37 7.70 6.93 -32.97 -0.23 7.47 16 15 O -0.42 -10.85 14.07 5.46 0.08 -10.77 16 16 C -0.24 -4.17 6.11 -104.87 -0.64 -4.82 16 17 C 0.11 1.29 11.31 -16.44 -0.19 1.10 16 18 N -0.58 -6.03 5.94 -10.31 -0.06 -6.09 16 19 H 0.42 2.59 8.96 -40.82 -0.37 2.23 16 20 C 0.07 1.01 7.24 -83.96 -0.61 0.40 16 21 C -0.13 -1.52 10.07 -39.42 -0.40 -1.92 16 22 C -0.11 -1.24 10.01 -39.57 -0.40 -1.64 16 23 C -0.15 -2.00 10.03 -39.56 -0.40 -2.39 16 24 C -0.06 -1.03 9.80 -39.39 -0.39 -1.42 16 25 C -0.06 -1.11 6.24 -104.93 -0.65 -1.76 16 26 H 0.18 4.08 7.80 -54.10 -0.42 3.66 16 27 H 0.10 2.53 6.41 -51.93 -0.33 2.19 16 28 H 0.03 0.69 7.97 -51.93 -0.41 0.28 16 29 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.08 1.34 8.02 -51.93 -0.42 0.92 16 31 H 0.07 1.10 7.95 -51.93 -0.41 0.69 16 32 H 0.18 1.44 7.91 -52.48 -0.42 1.03 16 33 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 34 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 36 H 0.13 2.53 7.38 -52.48 -0.39 2.15 16 LS Contribution 317.30 15.07 4.78 4.78 Total: -1.00 -36.21 317.30 -8.07 -44.28 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -3.98 Total: 4.10 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -4.01 Total: -13.30 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: 0.09 Total: -46.03 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.08 Total: -10.77 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -36.21 -8.07 -44.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491662538.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.900 kcal (2) G-P(sol) polarization free energy of solvation -36.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds