Wall clock time and date at job start Tue Mar 31 2020 06:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47199 * 308.81393 * 3 2 1 5 5 C 1.36936 * 120.00160 * 264.35505 * 4 3 2 6 6 H 1.07995 * 120.00213 * 196.60022 * 5 4 3 7 7 C 1.38820 * 119.99863 * 16.59969 * 5 4 3 8 8 N 1.31615 * 120.00013 * 22.37924 * 7 5 4 9 9 Si 1.86799 * 119.99848 * 202.38079 * 7 5 4 10 10 H 1.48491 * 109.47087 * 59.99981 * 9 7 5 11 11 H 1.48497 * 109.46960 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46975 * 300.00040 * 9 7 5 13 13 C 1.46495 * 119.99892 * 84.35334 * 4 3 2 14 14 C 1.50700 * 109.47241 * 270.00046 * 13 4 3 15 15 O 1.21394 * 120.00222 * 0.02562 * 14 13 4 16 16 C 1.41734 * 119.99769 * 180.02562 * 14 13 4 17 17 C 1.37864 * 126.91457 * 359.97438 * 16 14 13 18 18 N 1.34669 * 109.61838 * 179.97438 * 17 16 14 19 19 H 0.97000 * 124.63683 * 179.97438 * 18 17 16 20 20 C 1.38012 * 110.71272 * 0.02562 * 18 17 16 21 21 C 1.39140 * 133.04122 * 179.97438 * 20 18 17 22 22 C 1.37776 * 119.94895 * 179.97438 * 21 20 18 23 23 C 1.38720 * 120.63616 * 359.97438 * 22 21 20 24 24 C 1.37800 * 120.27072 * 0.02638 * 23 22 21 25 25 C 1.39183 * 119.67011 * 359.97191 * 24 23 22 26 26 H 4.40638 * 5.51372 * 179.97438 * 4 1 2 27 27 H 1.08999 * 109.46616 * 188.81480 * 3 2 1 28 28 H 1.08999 * 109.47178 * 68.81656 * 3 2 1 29 29 H 0.96998 * 119.99926 * 179.97438 * 8 7 5 30 30 H 1.09000 * 109.47171 * 149.99691 * 13 4 3 31 31 H 1.09005 * 109.47139 * 30.00128 * 13 4 3 32 32 H 1.08003 * 125.18886 * 359.97438 * 17 16 14 33 33 H 1.08006 * 120.02839 * 0.25498 * 21 20 18 34 34 H 1.07999 * 119.68103 * 179.97438 * 22 21 20 35 35 H 1.08002 * 119.86680 * 179.97438 * 23 22 21 36 36 H 1.08005 * 120.16283 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.8648 1.0762 5 6 3.4727 -0.3254 2.2886 6 1 4.0742 -0.8928 2.9833 7 6 3.0422 0.9508 2.6247 8 7 1.9889 1.4682 2.0288 9 14 3.9578 1.9337 3.9228 10 1 5.3651 2.1316 3.4925 11 1 3.3024 3.2549 4.0969 12 1 3.9331 1.1958 5.2112 13 6 3.2619 -2.3075 0.8553 14 6 1.9725 -2.9893 1.2345 15 8 1.0382 -2.3339 1.6484 16 6 1.8507 -4.3957 1.1078 17 6 2.8136 -5.2729 0.6562 18 7 2.3277 -6.5286 0.6790 19 1 2.8231 -7.3165 0.4057 20 6 1.0281 -6.5408 1.1433 21 6 0.1035 -7.5595 1.3514 22 6 -1.1507 -7.2613 1.8376 23 6 -1.5046 -5.9510 2.1242 24 6 -0.6027 -4.9284 1.9248 25 6 0.6676 -5.2160 1.4341 26 1 -1.0498 0.0000 0.0003 27 1 3.0088 1.0164 0.1575 28 1 3.0095 -0.3705 -0.9582 29 1 1.6878 2.3598 2.2639 30 1 4.0737 -2.6988 1.4684 31 1 3.4772 -2.4965 -0.1964 32 1 3.8062 -4.9953 0.3335 33 1 0.3702 -8.5837 1.1362 34 1 -1.8651 -8.0553 1.9971 35 1 -2.4913 -5.7313 2.5045 36 1 -0.8803 -3.9088 2.1482 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491662538.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:47 Heat of formation + Delta-G solvation = 95.547607 kcal Electronic energy + Delta-G solvation = -21224.158537 eV Core-core repulsion = 18062.110408 eV Total energy + Delta-G solvation = -3162.048129 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.32684 -39.64585 -37.86979 -37.24156 -33.39963 -33.23533 -32.79736 -30.67534 -30.43413 -28.36713 -27.74318 -24.69909 -23.89373 -22.92065 -22.41828 -19.68618 -19.29068 -18.70600 -18.17939 -17.38295 -16.73644 -16.44241 -16.18915 -16.01539 -15.56802 -15.37043 -15.00125 -14.77787 -14.52044 -14.45551 -14.21669 -13.34862 -13.28697 -13.05242 -12.66532 -12.62939 -12.54392 -12.38214 -12.22496 -11.92529 -11.88988 -10.79880 -10.65264 -10.55955 -10.39456 -10.08182 -9.25828 -8.81032 -8.66395 -7.74956 -5.16331 0.01795 0.58124 1.00144 1.49577 1.51117 1.58235 2.15067 2.44601 2.50957 2.61059 2.70706 3.01096 3.33122 3.68944 3.81082 3.91904 4.06175 4.19089 4.19948 4.30304 4.40603 4.58898 4.74641 4.77286 4.80523 4.86525 4.94147 5.13054 5.35510 5.40842 5.48830 5.56493 5.67035 5.68683 5.74251 5.81153 6.16528 6.34085 6.64378 7.14326 7.38276 7.51178 7.90658 8.30549 9.26525 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.023023 B = 0.004687 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.878249 B = 5971.969237 C = 6168.096259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 C -0.109 4.109 3 C 0.269 3.731 4 N -0.582 5.582 5 C -0.264 4.264 6 H 0.077 0.923 7 C -0.051 4.051 8 N -0.913 5.913 9 Si 0.962 3.038 10 H -0.269 1.269 11 H -0.302 1.302 12 H -0.286 1.286 13 C 0.098 3.902 14 C 0.366 3.634 15 O -0.493 6.493 16 C -0.316 4.316 17 C 0.167 3.833 18 N -0.551 5.551 19 H 0.442 0.558 20 C 0.065 3.935 21 C -0.113 4.113 22 C -0.111 4.111 23 C -0.141 4.141 24 C -0.111 4.111 25 C -0.096 4.096 26 H 0.201 0.799 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.242 0.758 30 H 0.102 0.898 31 H 0.108 0.892 32 H 0.234 0.766 33 H 0.161 0.839 34 H 0.161 0.839 35 H 0.134 0.866 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.885 -21.795 -5.985 22.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.331 4.331 2 C -0.112 4.112 3 C 0.144 3.856 4 N -0.300 5.300 5 C -0.394 4.394 6 H 0.095 0.905 7 C -0.247 4.247 8 N -0.558 5.558 9 Si 0.791 3.209 10 H -0.194 1.194 11 H -0.229 1.229 12 H -0.213 1.213 13 C -0.029 4.029 14 C 0.244 3.756 15 O -0.371 6.371 16 C -0.325 4.325 17 C 0.031 3.969 18 N -0.153 5.153 19 H 0.284 0.716 20 C -0.040 4.040 21 C -0.133 4.133 22 C -0.129 4.129 23 C -0.159 4.159 24 C -0.130 4.130 25 C -0.100 4.100 26 H 0.218 0.782 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.051 0.949 30 H 0.119 0.881 31 H 0.126 0.874 32 H 0.250 0.750 33 H 0.179 0.821 34 H 0.179 0.821 35 H 0.152 0.848 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.460 -21.409 -5.769 22.309 hybrid contribution -0.480 1.029 1.065 1.557 sum 1.980 -20.380 -4.704 21.009 Atomic orbital electron populations 1.24601 0.96180 1.05670 1.06652 1.24656 0.96095 0.95723 0.94759 1.17911 0.82237 0.95939 0.89541 1.44274 1.73490 1.01483 1.10803 1.19456 1.25247 0.98645 0.96013 0.90492 1.25631 0.97133 1.00797 1.01161 1.70371 1.22892 1.15962 1.46583 0.85431 0.78885 0.77485 0.79097 1.19419 1.22904 1.21296 1.21702 0.94918 0.83824 1.02411 1.22368 0.91334 0.87477 0.74383 1.90575 1.41656 1.68810 1.36050 1.20535 0.96647 0.95539 1.19747 1.23114 0.98981 0.81984 0.92821 1.41368 1.10618 1.09332 1.54002 0.71580 1.18455 0.87191 0.94645 1.03721 1.20486 0.92222 0.98092 1.02508 1.21184 0.96531 0.96234 0.98982 1.21225 0.99610 0.93103 1.01995 1.20658 0.93373 0.99073 0.99921 1.19361 0.94556 0.93618 1.02482 0.78200 0.91067 0.90962 0.94882 0.88066 0.87422 0.74990 0.82135 0.82146 0.84794 0.89425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -16.69 18.78 74.32 1.40 -15.29 16 2 C -0.11 -5.95 10.03 31.13 0.31 -5.64 16 3 C 0.27 13.37 5.45 84.58 0.46 13.83 16 4 N -0.58 -28.94 2.09 -716.91 -1.50 -30.44 16 5 C -0.26 -14.61 9.66 84.04 0.81 -13.80 16 6 H 0.08 4.10 7.90 -2.91 -0.02 4.08 16 7 C -0.05 -2.95 4.85 84.86 0.41 -2.54 16 8 N -0.91 -56.48 9.49 21.65 0.21 -56.27 16 9 Si 0.96 46.49 29.61 68.60 2.03 48.52 16 10 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 11 H -0.30 -14.97 7.11 99.48 0.71 -14.26 16 12 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 13 C 0.10 3.72 5.46 85.63 0.47 4.19 16 14 C 0.37 15.78 6.93 26.55 0.18 15.97 16 15 O -0.49 -27.48 14.07 -3.38 -0.05 -27.53 16 16 C -0.32 -10.66 6.11 -20.03 -0.12 -10.78 16 17 C 0.17 3.26 11.31 84.17 0.95 4.22 16 18 N -0.55 -8.71 5.94 -186.52 -1.11 -9.82 16 19 H 0.44 2.62 8.96 -92.71 -0.83 1.78 16 20 C 0.06 1.55 7.24 38.90 0.28 1.83 16 21 C -0.11 -2.13 10.07 22.38 0.23 -1.91 16 22 C -0.11 -2.25 10.01 22.28 0.22 -2.02 16 23 C -0.14 -3.88 10.03 22.28 0.22 -3.66 16 24 C -0.11 -4.11 9.80 22.39 0.22 -3.89 16 25 C -0.10 -3.34 6.24 -20.06 -0.13 -3.46 16 26 H 0.20 9.47 7.80 -4.43 -0.03 9.44 16 27 H 0.07 3.88 6.41 -2.39 -0.02 3.86 16 28 H 0.07 2.94 7.97 -2.39 -0.02 2.93 16 29 H 0.24 14.84 8.31 -92.71 -0.77 14.07 16 30 H 0.10 3.28 8.02 -2.39 -0.02 3.26 16 31 H 0.11 3.16 7.95 -2.38 -0.02 3.14 16 32 H 0.23 2.08 7.91 -2.91 -0.02 2.05 16 33 H 0.16 1.64 8.06 -2.91 -0.02 1.61 16 34 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 35 H 0.13 3.15 8.06 -2.91 -0.02 3.13 16 36 H 0.09 3.89 7.38 -2.91 -0.02 3.87 16 Total: -1.00 -87.79 317.30 5.78 -82.01 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 0.27 Total: 16.49 kcal Atomic # 6 Polarization: -28.88 SS G_CDS: 5.92 Total: -22.96 kcal Atomic # 7 Polarization: -94.13 SS G_CDS: -2.40 Total: -96.53 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.05 Total: -27.53 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -87.79 5.78 -82.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491662538.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.560 kcal (2) G-P(sol) polarization free energy of solvation -87.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds