Wall clock time and date at job start Tue Mar 31 2020 06:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46507 * 109.46891 * 214.68058 * 3 2 1 5 5 C 1.36931 * 119.99863 * 263.91522 * 4 3 2 6 6 H 1.08001 * 119.99872 * 199.38604 * 5 4 3 7 7 C 1.38812 * 120.00312 * 19.38556 * 5 4 3 8 8 N 1.31620 * 119.99994 * 22.29686 * 7 5 4 9 9 Si 1.86798 * 120.00114 * 202.29340 * 7 5 4 10 10 H 1.48503 * 109.47090 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47140 * 120.00425 * 9 7 5 12 12 H 1.48507 * 109.47302 * 240.00140 * 9 7 5 13 13 C 1.46504 * 119.99816 * 83.91636 * 4 3 2 14 14 C 1.50698 * 109.46997 * 89.99905 * 13 4 3 15 15 C 1.34548 * 126.07674 * 95.00308 * 14 13 4 16 16 O 1.34782 * 107.26754 * 180.22738 * 15 14 13 17 17 C 1.34426 * 107.69481 * 359.57300 * 16 15 14 18 18 C 1.47832 * 125.72634 * 180.16440 * 17 16 15 19 19 C 1.39567 * 120.14141 * 180.02562 * 18 17 16 20 20 C 1.37956 * 119.84978 * 179.74385 * 19 18 17 21 21 C 1.38355 * 120.14620 * 0.56170 * 20 19 18 22 22 C 1.38358 * 120.29207 * 359.69096 * 21 20 19 23 23 C 1.37968 * 120.14298 * 0.02814 * 22 21 20 24 24 N 1.31225 * 108.54667 * 0.43092 * 17 16 15 25 25 H 4.40639 * 5.51532 * 179.97438 * 4 1 2 26 26 H 1.09000 * 109.47420 * 94.68658 * 3 2 1 27 27 H 1.08997 * 109.47560 * 334.68092 * 3 2 1 28 28 H 0.96996 * 120.00594 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.47248 * 329.99950 * 13 4 3 30 30 H 1.08996 * 109.47101 * 209.99992 * 13 4 3 31 31 H 1.07991 * 126.36518 * 359.95788 * 15 14 13 32 32 H 1.08005 * 120.07240 * 0.02562 * 19 18 17 33 33 H 1.08003 * 119.92953 * 180.27154 * 20 19 18 34 34 H 1.08002 * 119.85669 * 179.72091 * 21 20 19 35 35 H 1.08000 * 119.93356 * 180.02562 * 22 21 20 36 36 H 1.07992 * 120.07591 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.1368 0.7860 5 6 3.4800 2.3042 0.1597 6 1 4.1180 3.0172 0.6608 7 6 3.0109 2.5715 -1.1191 8 7 1.9265 1.9706 -1.5613 9 14 3.9185 3.7840 -2.2125 10 1 5.0977 4.3192 -1.4858 11 1 4.3688 3.0949 -3.4484 12 1 3.0100 4.9023 -2.5723 13 6 3.2512 1.0237 2.2419 14 6 4.6237 0.5126 2.5970 15 6 5.6892 1.2658 2.9253 16 8 6.7151 0.4250 3.1644 17 6 6.2645 -0.8294 2.9895 18 6 7.0615 -2.0636 3.1538 19 6 6.4731 -3.3113 2.9412 20 6 7.2239 -4.4589 3.0911 21 6 8.5540 -4.3756 3.4625 22 6 9.1419 -3.1421 3.6799 23 6 8.4039 -1.9864 3.5278 24 7 5.0001 -0.7742 2.6428 25 1 -1.0502 -0.0001 -0.0003 26 1 3.0093 0.0848 -1.0242 27 1 3.0098 -0.9281 0.4395 28 1 1.5984 2.1575 -2.4547 29 1 2.4975 0.3299 2.6144 30 1 3.0995 2.0030 2.6958 31 1 5.7182 2.3438 2.9819 32 1 5.4337 -3.3778 2.6556 33 1 6.7710 -5.4249 2.9226 34 1 9.1362 -5.2773 3.5829 35 1 10.1808 -3.0838 3.9692 36 1 8.8640 -1.0242 3.6973 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491779669.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:36 Heat of formation + Delta-G solvation = 135.059267 kcal Electronic energy + Delta-G solvation = -20676.991015 eV Core-core repulsion = 17516.656240 eV Total energy + Delta-G solvation = -3160.334775 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.80924 -39.06634 -36.28804 -34.31548 -32.48193 -31.53396 -31.17524 -30.94369 -28.88304 -26.32652 -25.77860 -23.68804 -22.88832 -21.94917 -20.88145 -20.12483 -17.61727 -17.39150 -16.47881 -16.25766 -16.06016 -15.49519 -15.05455 -14.91939 -14.04481 -13.83217 -13.60693 -13.55686 -13.33479 -13.05630 -12.95771 -12.14904 -11.59157 -11.50047 -11.36446 -11.22245 -10.94204 -10.81002 -10.69054 -10.26754 -10.11297 -10.00551 -9.50896 -9.10297 -8.90447 -8.77441 -8.42919 -7.93303 -7.04201 -5.80964 -3.24587 0.72908 1.26244 2.14487 2.99619 3.13247 3.35011 3.43889 3.45066 3.79817 4.18372 4.25974 4.43640 4.53672 4.78047 4.80962 4.97966 5.24283 5.28822 5.34010 5.50258 5.51485 5.67214 5.73394 5.88917 5.90796 5.98544 6.20584 6.28260 6.34330 6.41433 6.52548 6.56716 6.75329 6.78391 6.85386 7.24109 7.45782 7.72052 8.16951 8.25950 9.07529 9.23559 9.73722 10.21354 11.22141 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.019785 B = 0.004296 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.897620 B = 6515.831159 C = 7091.316532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 C -0.094 4.094 3 C 0.269 3.731 4 N -0.575 5.575 5 C -0.271 4.271 6 H 0.073 0.927 7 C 0.009 3.991 8 N -0.882 5.882 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.291 1.291 13 C 0.219 3.781 14 C -0.002 4.002 15 C -0.070 4.070 16 O -0.205 6.205 17 C 0.201 3.799 18 C -0.001 4.001 19 C -0.074 4.074 20 C -0.121 4.121 21 C -0.111 4.111 22 C -0.123 4.123 23 C -0.096 4.096 24 N -0.453 5.453 25 H 0.190 0.810 26 H 0.089 0.911 27 H 0.044 0.956 28 H 0.254 0.746 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.213 0.787 32 H 0.139 0.861 33 H 0.129 0.871 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.167 -9.567 10.457 18.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.319 4.319 2 C -0.097 4.097 3 C 0.144 3.856 4 N -0.294 5.294 5 C -0.400 4.400 6 H 0.091 0.909 7 C -0.191 4.191 8 N -0.524 5.524 9 Si 0.727 3.273 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.218 1.218 13 C 0.090 3.910 14 C -0.126 4.126 15 C -0.140 4.140 16 O -0.092 6.092 17 C -0.002 4.002 18 C -0.002 4.002 19 C -0.094 4.094 20 C -0.139 4.139 21 C -0.130 4.130 22 C -0.141 4.141 23 C -0.116 4.116 24 N -0.183 5.183 25 H 0.208 0.792 26 H 0.107 0.893 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.230 0.770 32 H 0.157 0.843 33 H 0.147 0.853 34 H 0.142 0.858 35 H 0.145 0.855 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 10.758 -10.012 10.152 17.862 hybrid contribution 0.539 1.613 -0.743 1.856 sum 11.297 -8.399 9.409 16.932 Atomic orbital electron populations 1.24159 0.95295 1.06380 1.06106 1.24223 0.95234 0.94830 0.95395 1.17705 0.82792 0.87910 0.97167 1.43946 1.74275 1.11604 0.99569 1.19159 1.24893 0.97345 0.98596 0.90893 1.24913 0.96032 0.98896 0.99297 1.70156 1.19221 1.45168 1.17842 0.86320 0.79524 0.80495 0.80981 1.20314 1.21515 1.21775 1.19137 0.87046 0.98603 0.86191 1.23412 1.01165 0.87506 1.00540 1.24925 0.85287 0.96596 1.07221 1.84406 1.39552 1.16942 1.68295 1.23687 0.89879 0.83757 1.02845 1.17319 0.92189 0.87697 1.03001 1.21248 1.00942 0.90303 0.96859 1.21109 0.94260 0.98310 1.00264 1.21301 0.95227 0.97753 0.98684 1.21036 0.99991 0.92088 1.00974 1.21244 0.92677 0.99370 0.98282 1.70537 1.09548 1.22291 1.15934 0.79245 0.89317 0.93849 0.93515 0.92348 0.91166 0.77007 0.84275 0.85274 0.85786 0.85537 0.85325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -7.00 19.25 29.55 0.57 -6.44 16 2 C -0.09 -2.35 11.50 -37.12 -0.43 -2.78 16 3 C 0.27 6.66 5.41 -6.83 -0.04 6.62 16 4 N -0.58 -14.16 2.47 -177.95 -0.44 -14.60 16 5 C -0.27 -7.17 9.63 -15.06 -0.15 -7.32 16 6 H 0.07 1.86 7.92 -52.49 -0.42 1.44 16 7 C 0.01 0.23 4.82 -17.43 -0.08 0.15 16 8 N -0.88 -25.09 9.61 55.49 0.53 -24.56 16 9 Si 0.90 21.40 29.61 -169.99 -5.03 16.37 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 C 0.22 4.55 6.21 -5.19 -0.03 4.51 16 14 C 0.00 -0.03 6.68 -82.88 -0.55 -0.58 16 15 C -0.07 -1.19 12.08 29.43 0.36 -0.84 16 16 O -0.21 -3.50 10.52 4.05 0.04 -3.46 16 17 C 0.20 3.49 7.90 -13.89 -0.11 3.38 16 18 C 0.00 -0.01 5.87 -104.98 -0.62 -0.63 16 19 C -0.07 -0.95 9.69 -39.19 -0.38 -1.33 16 20 C -0.12 -1.22 10.03 -39.64 -0.40 -1.61 16 21 C -0.11 -0.99 10.04 -39.49 -0.40 -1.39 16 22 C -0.12 -1.16 10.03 -39.64 -0.40 -1.56 16 23 C -0.10 -1.13 9.72 -39.18 -0.38 -1.52 16 24 N -0.45 -8.76 10.91 -7.97 -0.09 -8.84 16 25 H 0.19 3.70 7.80 -54.08 -0.42 3.28 16 26 H 0.09 2.39 6.59 -51.93 -0.34 2.05 16 27 H 0.04 1.00 8.12 -51.93 -0.42 0.58 16 28 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.06 1.20 8.07 -51.93 -0.42 0.78 16 30 H 0.07 1.36 8.04 -51.93 -0.42 0.94 16 31 H 0.21 2.96 8.06 -52.49 -0.42 2.53 16 32 H 0.14 1.85 7.83 -52.48 -0.41 1.44 16 33 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 34 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 35 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.13 1.40 7.90 -52.49 -0.41 0.98 16 LS Contribution 326.12 15.07 4.91 4.91 Total: -1.00 -31.45 326.12 -7.19 -38.64 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -4.09 Total: 2.87 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: -3.03 Total: -11.34 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: 0.01 Total: -48.00 kcal Atomic # 8 Polarization: -3.50 SS G_CDS: 0.04 Total: -3.46 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.45 -7.19 -38.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491779669.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.701 kcal (2) G-P(sol) polarization free energy of solvation -31.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds