Wall clock time and date at job start Tue Mar 31 2020 06:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46507 * 109.46891 * 214.68058 * 3 2 1 5 5 C 1.36931 * 119.99863 * 263.91522 * 4 3 2 6 6 H 1.08001 * 119.99872 * 199.38604 * 5 4 3 7 7 C 1.38812 * 120.00312 * 19.38556 * 5 4 3 8 8 N 1.31620 * 119.99994 * 22.29686 * 7 5 4 9 9 Si 1.86798 * 120.00114 * 202.29340 * 7 5 4 10 10 H 1.48503 * 109.47090 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47140 * 120.00425 * 9 7 5 12 12 H 1.48507 * 109.47302 * 240.00140 * 9 7 5 13 13 C 1.46504 * 119.99816 * 83.91636 * 4 3 2 14 14 C 1.50698 * 109.46997 * 89.99905 * 13 4 3 15 15 C 1.34548 * 126.07674 * 95.00308 * 14 13 4 16 16 O 1.34782 * 107.26754 * 180.22738 * 15 14 13 17 17 C 1.34426 * 107.69481 * 359.57300 * 16 15 14 18 18 C 1.47832 * 125.72634 * 180.16440 * 17 16 15 19 19 C 1.39567 * 120.14141 * 180.02562 * 18 17 16 20 20 C 1.37956 * 119.84978 * 179.74385 * 19 18 17 21 21 C 1.38355 * 120.14620 * 0.56170 * 20 19 18 22 22 C 1.38358 * 120.29207 * 359.69096 * 21 20 19 23 23 C 1.37968 * 120.14298 * 0.02814 * 22 21 20 24 24 N 1.31225 * 108.54667 * 0.43092 * 17 16 15 25 25 H 4.40639 * 5.51532 * 179.97438 * 4 1 2 26 26 H 1.09000 * 109.47420 * 94.68658 * 3 2 1 27 27 H 1.08997 * 109.47560 * 334.68092 * 3 2 1 28 28 H 0.96996 * 120.00594 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.47248 * 329.99950 * 13 4 3 30 30 H 1.08996 * 109.47101 * 209.99992 * 13 4 3 31 31 H 1.07991 * 126.36518 * 359.95788 * 15 14 13 32 32 H 1.08005 * 120.07240 * 0.02562 * 19 18 17 33 33 H 1.08003 * 119.92953 * 180.27154 * 20 19 18 34 34 H 1.08002 * 119.85669 * 179.72091 * 21 20 19 35 35 H 1.08000 * 119.93356 * 180.02562 * 22 21 20 36 36 H 1.07992 * 120.07591 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.1368 0.7860 5 6 3.4800 2.3042 0.1597 6 1 4.1180 3.0172 0.6608 7 6 3.0109 2.5715 -1.1191 8 7 1.9265 1.9706 -1.5613 9 14 3.9185 3.7840 -2.2125 10 1 5.0977 4.3192 -1.4858 11 1 4.3688 3.0949 -3.4484 12 1 3.0100 4.9023 -2.5723 13 6 3.2512 1.0237 2.2419 14 6 4.6237 0.5126 2.5970 15 6 5.6892 1.2658 2.9253 16 8 6.7151 0.4250 3.1644 17 6 6.2645 -0.8294 2.9895 18 6 7.0615 -2.0636 3.1538 19 6 6.4731 -3.3113 2.9412 20 6 7.2239 -4.4589 3.0911 21 6 8.5540 -4.3756 3.4625 22 6 9.1419 -3.1421 3.6799 23 6 8.4039 -1.9864 3.5278 24 7 5.0001 -0.7742 2.6428 25 1 -1.0502 -0.0001 -0.0003 26 1 3.0093 0.0848 -1.0242 27 1 3.0098 -0.9281 0.4395 28 1 1.5984 2.1575 -2.4547 29 1 2.4975 0.3299 2.6144 30 1 3.0995 2.0030 2.6958 31 1 5.7182 2.3438 2.9819 32 1 5.4337 -3.3778 2.6556 33 1 6.7710 -5.4249 2.9226 34 1 9.1362 -5.2773 3.5829 35 1 10.1808 -3.0838 3.9692 36 1 8.8640 -1.0242 3.6973 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491779669.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:35 Heat of formation + Delta-G solvation = 116.534269 kcal Electronic energy + Delta-G solvation = -20677.794320 eV Core-core repulsion = 17516.656240 eV Total energy + Delta-G solvation = -3161.138079 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.16409 -39.91656 -38.11130 -35.79377 -33.76826 -33.48554 -32.64879 -31.89038 -30.28526 -28.06596 -27.62402 -24.76943 -24.16061 -23.40111 -22.06656 -21.50931 -19.32089 -18.79967 -18.11009 -17.64970 -17.30043 -16.89486 -16.47281 -16.03852 -15.58514 -15.44063 -15.24490 -14.72658 -14.59871 -14.35758 -13.85105 -13.77388 -13.47026 -13.22722 -12.80124 -12.56806 -12.34696 -12.26125 -12.19530 -12.02947 -11.91660 -11.47205 -10.85599 -10.79524 -10.52505 -10.37849 -9.93089 -9.17703 -8.98311 -7.84919 -5.29725 -0.28006 0.43808 0.91738 1.44973 1.48872 1.57465 1.74887 1.79147 2.35988 2.50920 2.58320 2.88553 2.98408 3.28207 3.86556 3.89774 4.00480 4.05595 4.08542 4.15131 4.26456 4.49971 4.51976 4.61479 4.82085 4.86005 4.90018 4.99493 5.03337 5.11364 5.19497 5.29996 5.49748 5.52365 5.55916 5.61550 5.65527 5.98121 6.24825 6.80551 7.05488 7.33531 7.76649 8.23363 9.16907 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.019785 B = 0.004296 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.897620 B = 6515.831159 C = 7091.316532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 C -0.137 4.137 3 C 0.279 3.721 4 N -0.588 5.588 5 C -0.273 4.273 6 H 0.082 0.918 7 C -0.042 4.042 8 N -0.910 5.910 9 Si 0.959 3.041 10 H -0.266 1.266 11 H -0.296 1.296 12 H -0.294 1.294 13 C 0.224 3.776 14 C -0.029 4.029 15 C -0.062 4.062 16 O -0.205 6.205 17 C 0.207 3.793 18 C -0.038 4.038 19 C -0.091 4.091 20 C -0.121 4.121 21 C -0.097 4.097 22 C -0.118 4.118 23 C -0.101 4.101 24 N -0.487 5.487 25 H 0.226 0.774 26 H 0.059 0.941 27 H 0.049 0.951 28 H 0.247 0.753 29 H 0.052 0.948 30 H 0.082 0.918 31 H 0.243 0.757 32 H 0.121 0.879 33 H 0.154 0.846 34 H 0.162 0.838 35 H 0.160 0.840 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.307 -10.348 11.525 20.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 C -0.139 4.139 3 C 0.154 3.846 4 N -0.308 5.308 5 C -0.402 4.402 6 H 0.099 0.901 7 C -0.239 4.239 8 N -0.555 5.555 9 Si 0.787 3.213 10 H -0.190 1.190 11 H -0.223 1.223 12 H -0.222 1.222 13 C 0.097 3.903 14 C -0.152 4.152 15 C -0.132 4.132 16 O -0.091 6.091 17 C 0.004 3.996 18 C -0.039 4.039 19 C -0.110 4.110 20 C -0.139 4.139 21 C -0.115 4.115 22 C -0.136 4.136 23 C -0.120 4.120 24 N -0.217 5.217 25 H 0.242 0.758 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.100 0.900 31 H 0.259 0.741 32 H 0.139 0.861 33 H 0.172 0.828 34 H 0.180 0.820 35 H 0.178 0.822 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 12.908 -10.792 11.255 20.243 hybrid contribution -0.054 1.697 -0.969 1.955 sum 12.854 -9.095 10.286 18.809 Atomic orbital electron populations 1.25008 0.96282 1.04742 1.04309 1.24511 0.95971 0.96407 0.97050 1.17444 0.83157 0.88357 0.95667 1.44092 1.74596 1.11017 1.01080 1.19504 1.24129 0.97681 0.98869 0.90070 1.25598 0.96780 1.00982 1.00541 1.70307 1.20627 1.46987 1.17530 0.85353 0.78603 0.78322 0.78978 1.18999 1.22327 1.22166 1.19114 0.87902 0.99132 0.84126 1.23100 1.01043 0.88228 1.02858 1.25372 0.84508 0.97640 1.05711 1.84425 1.39400 1.17002 1.68320 1.24369 0.89579 0.84647 1.01022 1.17546 0.93357 0.86822 1.06197 1.21278 1.00679 0.91105 0.97935 1.21430 0.94858 0.98219 0.99404 1.21786 0.94717 0.99049 0.95994 1.21455 1.01300 0.91308 0.99532 1.21421 0.91735 1.00807 0.98055 1.70478 1.10947 1.22510 1.17755 0.75764 0.92248 0.93356 0.94362 0.92976 0.89978 0.74091 0.86055 0.82832 0.82025 0.82223 0.84866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -13.19 19.25 74.32 1.43 -11.76 16 2 C -0.14 -6.98 11.50 31.12 0.36 -6.62 16 3 C 0.28 14.33 5.41 84.57 0.46 14.79 16 4 N -0.59 -29.56 2.47 -716.90 -1.77 -31.34 16 5 C -0.27 -14.51 9.63 84.03 0.81 -13.70 16 6 H 0.08 4.09 7.92 -2.91 -0.02 4.07 16 7 C -0.04 -2.31 4.82 84.86 0.41 -1.91 16 8 N -0.91 -52.92 9.61 21.65 0.21 -52.71 16 9 Si 0.96 44.51 29.61 68.60 2.03 46.54 16 10 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 11 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 12 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 13 C 0.22 9.50 6.21 85.63 0.53 10.03 16 14 C -0.03 -1.14 6.68 41.36 0.28 -0.87 16 15 C -0.06 -2.09 12.08 66.97 0.81 -1.28 16 16 O -0.20 -6.93 10.52 -8.43 -0.09 -7.02 16 17 C 0.21 7.31 7.90 87.32 0.69 8.00 16 18 C -0.04 -1.08 5.87 -20.10 -0.12 -1.20 16 19 C -0.09 -2.32 9.69 22.52 0.22 -2.10 16 20 C -0.12 -2.16 10.03 22.23 0.22 -1.93 16 21 C -0.10 -1.35 10.04 22.33 0.22 -1.12 16 22 C -0.12 -1.82 10.03 22.23 0.22 -1.59 16 23 C -0.10 -2.21 9.72 22.53 0.22 -1.99 16 24 N -0.49 -19.46 10.91 -293.18 -3.20 -22.66 16 25 H 0.23 8.34 7.80 -4.41 -0.03 8.30 16 26 H 0.06 3.36 6.59 -2.39 -0.02 3.34 16 27 H 0.05 2.36 8.12 -2.39 -0.02 2.34 16 28 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 29 H 0.05 2.22 8.07 -2.39 -0.02 2.20 16 30 H 0.08 3.19 8.04 -2.39 -0.02 3.17 16 31 H 0.24 6.34 8.06 -2.92 -0.02 6.32 16 32 H 0.12 3.43 7.83 -2.91 -0.02 3.41 16 33 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 34 H 0.16 1.08 8.06 -2.91 -0.02 1.06 16 35 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 36 H 0.13 2.70 7.90 -2.91 -0.02 2.68 16 Total: -1.00 -69.22 326.12 5.02 -64.20 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 1.08 Total: 16.25 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: 6.76 Total: -13.27 kcal Atomic # 7 Polarization: -101.94 SS G_CDS: -4.76 Total: -106.70 kcal Atomic # 8 Polarization: -6.93 SS G_CDS: -0.09 Total: -7.02 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -69.22 5.02 -64.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491779669.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.737 kcal (2) G-P(sol) polarization free energy of solvation -69.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds