Wall clock time and date at job start Tue Mar 31 2020 05:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33387 * 122.54502 * 2 1 4 4 S 1.75881 * 109.59726 * 180.24346 * 3 2 1 5 5 C 1.75883 * 90.96912 * 359.73260 * 4 3 2 6 6 C 1.33386 * 109.59422 * 359.97438 * 5 4 3 7 7 C 1.50706 * 122.54021 * 180.02562 * 6 5 4 8 8 N 1.46500 * 109.46949 * 260.02338 * 7 6 5 9 9 C 1.34769 * 120.00237 * 180.02562 * 8 7 6 10 10 O 1.21587 * 120.00170 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00179 * 180.02562 * 9 8 7 12 12 C 1.46509 * 120.00229 * 179.97438 * 11 9 8 13 13 C 1.52992 * 109.47110 * 179.97438 * 12 11 9 14 14 C 1.53003 * 109.47106 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47374 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99780 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00102 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99780 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00208 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47139 * 89.99801 * 19 17 15 21 21 H 1.48496 * 109.47008 * 209.99699 * 19 17 15 22 22 H 1.48502 * 109.46714 * 330.00061 * 19 17 15 23 23 H 1.08996 * 109.46506 * 270.25320 * 1 2 3 24 24 H 1.08993 * 109.46761 * 30.25120 * 1 2 3 25 25 H 1.08999 * 109.47279 * 150.25533 * 1 2 3 26 26 H 1.08005 * 125.20274 * 359.97272 * 3 2 1 27 27 H 1.07998 * 125.20609 * 179.97438 * 5 4 3 28 28 H 1.09000 * 109.47318 * 20.01724 * 7 6 5 29 29 H 1.09000 * 109.47161 * 140.02354 * 7 6 5 30 30 H 0.97010 * 119.99909 * 359.97438 * 8 7 6 31 31 H 0.97004 * 120.00422 * 359.97438 * 11 9 8 32 32 H 1.09000 * 109.46533 * 300.00054 * 12 11 9 33 33 H 1.08996 * 109.47040 * 59.99304 * 12 11 9 34 34 H 1.09000 * 109.47642 * 299.99590 * 13 12 11 35 35 H 1.09005 * 109.47413 * 60.00114 * 13 12 11 36 36 H 1.09005 * 109.47135 * 300.00427 * 14 13 12 37 37 H 1.09005 * 109.46763 * 59.99872 * 14 13 12 38 38 H 0.97003 * 119.99925 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2246 1.1244 0.0000 4 16 3.9387 0.7303 -0.0070 5 6 3.5737 -0.9902 -0.0015 6 6 2.2516 -1.1670 0.0056 7 6 1.6165 -2.5337 0.0124 8 7 1.1869 -2.8792 -1.3449 9 6 0.5882 -4.0632 -1.5814 10 8 0.4049 -4.8449 -0.6683 11 7 0.1935 -4.3813 -2.8302 12 6 -0.4569 -5.6686 -3.0873 13 6 -0.8020 -5.7777 -4.5738 14 6 -1.4806 -7.1225 -4.8425 15 6 -1.8211 -7.2297 -6.3066 16 1 -1.5774 -6.4199 -6.9784 17 6 -2.4437 -8.3616 -6.7885 18 7 -2.7400 -9.3478 -5.9705 19 14 -2.8651 -8.4949 -8.6035 20 1 -1.7276 -9.1120 -9.3318 21 1 -4.0756 -9.3388 -8.7699 22 1 -3.1271 -7.1398 -9.1515 23 1 -0.3632 0.0045 1.0277 24 1 -0.3632 0.8877 -0.5177 25 1 -0.3634 -0.8922 -0.5098 26 1 1.8156 2.1240 -0.0004 27 1 4.3077 -1.7824 -0.0035 28 1 2.3408 -3.2692 0.3624 29 1 0.7525 -2.5296 0.6769 30 1 1.3328 -2.2554 -2.0734 31 1 0.3399 -3.7579 -3.5588 32 1 0.2181 -6.4784 -2.8102 33 1 -1.3702 -5.7387 -2.4965 34 1 -1.4772 -4.9680 -4.8506 35 1 0.1111 -5.7075 -5.1650 36 1 -0.8052 -7.9320 -4.5659 37 1 -2.3937 -7.1931 -4.2514 38 1 -3.1783 -10.1440 -6.3094 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000494882772.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:09 Heat of formation + Delta-G solvation = -18.437879 kcal Electronic energy + Delta-G solvation = -18719.917859 eV Core-core repulsion = 15688.370900 eV Total energy + Delta-G solvation = -3031.546960 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.04421 -38.87052 -35.50630 -34.34460 -33.26526 -31.60121 -30.99297 -28.67583 -26.80487 -25.60410 -23.07022 -22.46994 -20.82350 -20.35749 -18.80565 -18.03854 -17.71331 -16.53203 -15.98750 -15.63598 -15.21355 -14.56593 -14.37410 -14.31879 -13.96563 -13.81324 -13.53857 -13.32561 -12.74865 -12.37134 -12.26586 -12.20032 -11.89007 -11.78630 -11.63830 -11.12607 -10.89405 -10.70480 -10.58194 -10.13677 -9.84052 -9.44451 -9.20082 -9.13263 -9.09156 -8.68791 -8.57138 -8.35993 -6.00651 -4.03652 0.59483 1.28019 1.60048 2.09408 3.06237 3.31475 3.37840 3.39580 3.40661 4.42651 4.46558 4.49412 4.52426 4.87860 5.03507 5.16001 5.21397 5.34356 5.35094 5.50198 5.61996 5.73850 5.78912 5.84021 6.09495 6.15222 6.20821 6.42514 6.55565 6.64713 6.83208 7.04390 7.10352 7.65370 7.78416 7.98452 8.17526 8.39419 8.77562 9.03098 9.60390 11.10653 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.036391 B = 0.002338 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.232888 B =11972.864844 C =12175.722070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.088 4.088 3 C -0.220 4.220 4 S 0.098 5.902 5 C -0.188 4.188 6 C -0.119 4.119 7 C 0.202 3.798 8 N -0.747 5.747 9 C 0.700 3.300 10 O -0.593 6.593 11 N -0.741 5.741 12 C 0.135 3.865 13 C -0.120 4.120 14 C 0.024 3.976 15 C -0.522 4.522 16 H 0.055 0.945 17 C 0.056 3.944 18 N -0.894 5.894 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.164 0.836 27 H 0.168 0.832 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.395 0.605 31 H 0.394 0.606 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.994 22.791 12.526 28.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.100 4.100 3 C -0.355 4.355 4 S 0.364 5.636 5 C -0.325 4.325 6 C -0.132 4.132 7 C 0.075 3.925 8 N -0.404 5.404 9 C 0.400 3.600 10 O -0.471 6.471 11 N -0.396 5.396 12 C 0.012 3.988 13 C -0.158 4.158 14 C -0.014 4.014 15 C -0.560 4.560 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 H 0.090 0.910 24 H 0.086 0.914 25 H 0.092 0.908 26 H 0.182 0.818 27 H 0.185 0.815 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.229 0.771 31 H 0.227 0.773 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.102 22.736 13.384 29.457 hybrid contribution -1.284 -0.313 -1.670 2.130 sum 11.818 22.423 11.714 27.922 Atomic orbital electron populations 1.20595 0.89425 1.03238 1.02688 1.18850 0.97663 0.91348 1.02124 1.25432 0.95724 1.02380 1.12009 1.84327 1.06432 1.00176 1.72700 1.25624 0.99155 0.99435 1.08244 1.18881 0.92714 0.95795 1.05856 1.19637 0.98812 0.90368 0.83681 1.45143 1.65743 1.18991 1.10534 1.16005 0.78550 0.81704 0.83752 1.90924 1.62097 1.50539 1.43585 1.45389 1.64615 1.21861 1.07702 1.21508 0.96628 0.82486 0.98181 1.21887 1.00451 1.01909 0.91577 1.19031 0.95605 0.90015 0.96744 1.21205 1.38724 1.02274 0.93815 0.92671 1.25033 0.95838 0.95864 0.97765 1.69967 1.41849 1.06772 1.34683 0.86582 0.77916 0.77995 0.85423 1.20673 1.21213 1.19913 0.90972 0.91443 0.90797 0.81829 0.81478 0.90894 0.90583 0.77117 0.77333 0.91969 0.91951 0.92777 0.92798 0.96248 0.96234 0.92932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.72 9.61 36.01 0.35 -0.37 16 2 C -0.09 -0.70 5.80 -106.25 -0.62 -1.32 16 3 C -0.22 -1.57 10.98 29.04 0.32 -1.25 16 4 S 0.10 0.68 23.34 -107.50 -2.51 -1.83 16 5 C -0.19 -1.45 10.95 29.04 0.32 -1.13 16 6 C -0.12 -1.01 5.17 -106.24 -0.55 -1.56 16 7 C 0.20 2.04 5.11 -5.19 -0.03 2.01 16 8 N -0.75 -8.18 5.27 -66.41 -0.35 -8.53 16 9 C 0.70 10.67 8.57 -86.93 -0.74 9.93 16 10 O -0.59 -11.63 16.34 5.29 0.09 -11.55 16 11 N -0.74 -10.79 5.56 -65.23 -0.36 -11.15 16 12 C 0.14 2.42 5.67 -4.04 -0.02 2.40 16 13 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 14 C 0.02 0.60 4.97 -27.88 -0.14 0.47 16 15 C -0.52 -14.60 9.11 -34.44 -0.31 -14.92 16 16 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.90 13.29 55.43 0.74 -26.17 16 19 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 25 H 0.07 0.60 7.11 -51.93 -0.37 0.23 16 26 H 0.16 0.87 8.06 -52.48 -0.42 0.44 16 27 H 0.17 1.07 8.06 -52.49 -0.42 0.64 16 28 H 0.07 0.78 8.07 -51.93 -0.42 0.36 16 29 H 0.08 0.82 7.71 -51.93 -0.40 0.42 16 30 H 0.40 3.45 8.48 -40.82 -0.35 3.10 16 31 H 0.39 4.58 8.49 -40.82 -0.35 4.23 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 338.46 15.07 5.10 5.10 Total: -1.00 -32.93 338.46 -9.64 -42.56 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -5.65 Total: 1.79 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: -1.67 Total: -6.73 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: 0.02 Total: -45.85 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.55 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 0.68 SS G_CDS: -2.51 Total: -1.83 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.93 -9.64 -42.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494882772.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.125 kcal (2) G-P(sol) polarization free energy of solvation -32.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds