Wall clock time and date at job start Tue Mar 31 2020 06:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47670 * 2 1 4 4 N 1.46902 * 109.47134 * 120.00571 * 2 1 3 5 5 C 1.46900 * 111.00215 * 152.85732 * 4 2 1 6 6 C 1.50706 * 109.46728 * 288.19656 * 5 4 2 7 7 H 1.07999 * 119.99843 * 4.62500 * 6 5 4 8 8 C 1.37876 * 119.99717 * 184.62428 * 6 5 4 9 9 N 1.31507 * 120.00200 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99654 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.47047 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46692 * 120.00223 * 10 8 6 13 13 H 1.48493 * 109.47241 * 240.00013 * 10 8 6 14 14 C 1.46905 * 110.99609 * 276.80794 * 4 2 1 15 15 C 1.50698 * 109.47233 * 76.08416 * 14 4 2 16 16 C 1.32771 * 124.71009 * 79.72720 * 15 14 4 17 17 C 1.44428 * 113.07995 * 179.76582 * 16 15 14 18 18 C 1.47198 * 123.45973 * 180.32049 * 17 16 15 19 19 N 1.34772 * 120.00065 * 180.19335 * 18 17 16 20 20 O 1.21633 * 119.99752 * 0.19057 * 18 17 16 21 21 C 1.36002 * 113.08009 * 0.47053 * 17 16 15 22 22 S 1.70448 * 110.81720 * 359.54590 * 21 17 16 23 23 H 1.09006 * 109.46751 * 305.63413 * 1 2 3 24 24 H 1.08999 * 109.47146 * 65.62360 * 1 2 3 25 25 H 1.08996 * 109.47728 * 185.62825 * 1 2 3 26 26 H 1.09003 * 109.46961 * 239.99839 * 2 1 3 27 27 H 1.08999 * 109.47017 * 170.91158 * 3 2 1 28 28 H 1.08997 * 109.46693 * 290.91667 * 3 2 1 29 29 H 1.08995 * 109.46784 * 50.91565 * 3 2 1 30 30 H 1.08994 * 109.47203 * 48.19243 * 5 4 2 31 31 H 1.09002 * 109.47028 * 168.20133 * 5 4 2 32 32 H 0.97000 * 120.00211 * 179.97438 * 9 8 6 33 33 H 1.09007 * 109.46954 * 316.08311 * 14 4 2 34 34 H 1.09002 * 109.47084 * 196.08754 * 14 4 2 35 35 H 1.07997 * 123.45746 * 0.02590 * 16 15 14 36 36 H 0.97006 * 119.99644 * 359.97438 * 19 18 17 37 37 H 0.96992 * 119.99903 * 179.97438 * 19 18 17 38 38 H 1.08001 * 124.59123 * 179.80853 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 3.3457 -1.2792 0.9641 6 6 3.2139 -2.4666 0.0454 7 1 2.2546 -2.7116 -0.3860 8 6 4.3179 -3.2399 -0.2444 9 7 5.4861 -2.9412 0.2805 10 14 4.1543 -4.7121 -1.3826 11 1 2.7458 -4.8320 -1.8374 12 1 5.0403 -4.5281 -2.5602 13 1 4.5470 -5.9459 -0.6557 14 6 2.0418 0.2114 2.3571 15 6 0.6383 0.4040 2.8711 16 6 -0.0086 -0.4595 3.6447 17 6 -1.3394 -0.0202 3.9940 18 6 -2.2530 -0.7975 4.8471 19 7 -3.4829 -0.3222 5.1257 20 8 -1.8978 -1.8688 5.3005 21 6 -1.6629 1.1841 3.4510 22 16 -0.3682 1.8006 2.5296 23 1 -0.3633 0.5988 0.8353 24 1 -0.3633 0.4241 -0.9360 25 1 -0.3634 -1.0226 0.1008 26 1 1.8933 -0.5139 -0.8900 27 1 3.1179 1.4467 0.1623 28 1 1.8153 1.9073 -0.9599 29 1 1.5504 2.0010 0.7977 30 1 3.9960 -0.5348 0.5047 31 1 3.7746 -1.6002 1.9134 32 1 6.2628 -3.4854 0.0769 33 1 2.4546 1.1749 2.0579 34 1 2.6607 -0.2205 3.1436 35 1 0.4181 -1.3926 3.9819 36 1 -3.7660 0.5323 4.7643 37 1 -4.0850 -0.8347 5.6876 38 1 -2.6102 1.6842 3.5888 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000534337986.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:07 Heat of formation + Delta-G solvation = 0.578779 kcal Electronic energy + Delta-G solvation = -20147.489692 eV Core-core repulsion = 17116.767357 eV Total energy + Delta-G solvation = -3030.722335 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.66784 -38.24169 -36.35354 -33.82744 -32.84338 -31.38055 -30.15456 -27.13609 -26.57610 -25.18091 -24.29875 -22.03423 -20.87070 -19.20066 -19.08277 -17.92207 -16.91629 -16.37981 -15.98586 -15.49871 -14.86605 -14.69647 -14.40784 -14.20753 -13.39289 -13.36299 -12.94867 -12.79680 -12.59679 -12.23048 -11.94985 -11.86648 -11.55124 -11.33457 -10.94393 -10.82018 -10.71033 -10.49800 -10.45961 -10.13838 -9.97027 -9.82467 -9.74830 -9.24533 -8.64734 -8.41885 -8.02975 -7.25306 -6.01080 -4.01658 0.79255 1.58458 1.99736 2.19318 3.33129 3.40835 3.41983 3.46283 3.47077 4.45027 4.71404 4.94900 4.99661 5.26382 5.35154 5.46805 5.51285 5.58221 5.80520 5.88262 5.96020 6.09072 6.12524 6.27028 6.28373 6.43519 6.46711 6.54993 6.66355 6.82048 6.85643 7.21395 7.26373 7.33082 7.83444 8.09719 8.20052 8.21577 8.53707 9.06159 9.62460 11.09585 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.019746 B = 0.004796 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.643013 B = 5836.253593 C = 6605.863905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.079 3.921 3 C -0.176 4.176 4 N -0.522 5.522 5 C 0.192 3.808 6 C -0.502 4.502 7 H 0.064 0.936 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.896 3.104 11 H -0.272 1.272 12 H -0.286 1.286 13 H -0.284 1.284 14 C 0.109 3.891 15 C -0.162 4.162 16 C -0.078 4.078 17 C -0.152 4.152 18 C 0.582 3.418 19 N -0.855 5.855 20 O -0.536 6.536 21 C -0.233 4.233 22 S 0.187 5.813 23 H 0.059 0.941 24 H 0.043 0.957 25 H 0.058 0.942 26 H 0.090 0.910 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.046 0.954 30 H -0.008 1.008 31 H 0.033 0.967 32 H 0.260 0.740 33 H 0.050 0.950 34 H 0.087 0.913 35 H 0.155 0.845 36 H 0.398 0.602 37 H 0.403 0.597 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.076 13.144 5.524 20.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.030 4.030 3 C -0.235 4.235 4 N -0.245 5.245 5 C 0.068 3.932 6 C -0.541 4.541 7 H 0.082 0.918 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.724 3.276 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.210 1.210 14 C -0.022 4.022 15 C -0.279 4.279 16 C -0.106 4.106 17 C -0.172 4.172 18 C 0.367 3.633 19 N -0.419 5.419 20 O -0.413 6.413 21 C -0.371 4.371 22 S 0.455 5.545 23 H 0.077 0.923 24 H 0.062 0.938 25 H 0.077 0.923 26 H 0.108 0.892 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.010 0.990 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.106 0.894 35 H 0.173 0.827 36 H 0.226 0.774 37 H 0.234 0.766 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -14.577 13.346 5.002 20.387 hybrid contribution -0.222 -1.239 0.094 1.262 sum -14.800 12.107 5.097 19.788 Atomic orbital electron populations 1.22332 0.95968 1.02321 1.00747 1.21637 0.94623 0.91521 0.95262 1.22453 1.01360 0.98910 1.00786 1.62305 1.30291 1.30207 1.01746 1.19807 0.82464 0.93682 0.97282 1.21177 0.95006 1.10862 1.27027 0.91817 1.24962 0.95239 0.97843 0.96497 1.69956 0.99661 1.39705 1.44608 0.86466 0.78124 0.82590 0.80410 1.19662 1.21193 1.21029 1.20768 0.88609 0.97181 0.95596 1.24508 1.01887 0.97566 1.03984 1.20996 0.91395 1.00266 0.97942 1.20153 0.96576 0.95981 1.04475 1.17715 0.81325 0.84782 0.79481 1.43687 1.16586 1.25890 1.55704 1.90851 1.75807 1.22022 1.52644 1.25559 1.05427 1.00849 1.05268 1.82947 1.04022 1.21822 1.45740 0.92312 0.93760 0.92298 0.89174 0.92394 0.92742 0.93523 0.99050 0.94884 0.93015 0.93220 0.89433 0.82724 0.77351 0.76635 0.81934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 8.92 37.16 0.33 -2.19 16 2 C 0.08 1.45 2.68 -67.71 -0.18 1.27 16 3 C -0.18 -2.77 7.79 37.16 0.29 -2.48 16 4 N -0.52 -10.80 4.29 -229.51 -0.99 -11.79 16 5 C 0.19 4.85 4.64 -4.97 -0.02 4.83 16 6 C -0.50 -13.95 8.36 -34.44 -0.29 -14.23 16 7 H 0.06 1.78 7.65 -52.49 -0.40 1.38 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -26.54 13.29 55.43 0.74 -25.80 16 10 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 14 C 0.11 1.88 4.99 -4.97 -0.02 1.86 16 15 C -0.16 -2.47 4.41 -36.18 -0.16 -2.63 16 16 C -0.08 -1.25 9.95 -39.02 -0.39 -1.64 16 17 C -0.15 -2.06 5.98 -104.63 -0.63 -2.69 16 18 C 0.58 7.98 8.06 -12.62 -0.10 7.87 16 19 N -0.85 -7.17 8.84 30.38 0.27 -6.90 16 20 O -0.54 -9.73 17.63 5.25 0.09 -9.64 16 21 C -0.23 -2.44 10.38 29.93 0.31 -2.13 16 22 S 0.19 2.16 18.39 -107.50 -1.98 0.18 16 23 H 0.06 0.86 3.10 -28.29 -0.09 0.77 16 24 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.09 1.90 6.97 -51.93 -0.36 1.54 16 27 H 0.06 0.98 7.13 -51.93 -0.37 0.61 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.65 4.93 -51.93 -0.26 0.39 16 30 H -0.01 -0.22 7.32 -51.93 -0.38 -0.60 16 31 H 0.03 0.90 7.68 -51.93 -0.40 0.50 16 32 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.05 0.80 5.24 -51.93 -0.27 0.53 16 34 H 0.09 1.56 7.64 -51.93 -0.40 1.16 16 35 H 0.16 2.74 8.06 -52.49 -0.42 2.31 16 36 H 0.40 2.09 7.33 -40.82 -0.30 1.79 16 37 H 0.40 2.79 8.93 -40.82 -0.36 2.43 16 38 H 0.16 1.07 7.01 -52.49 -0.37 0.70 16 LS Contribution 316.67 15.07 4.77 4.77 Total: -1.00 -32.69 316.67 -7.86 -40.54 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -4.78 Total: 2.54 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: -0.96 Total: -10.68 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: 0.02 Total: -44.49 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.09 Total: -9.64 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -1.98 Total: 0.18 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.69 -7.86 -40.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534337986.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.122 kcal (2) G-P(sol) polarization free energy of solvation -32.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds