Wall clock time and date at job start Tue Mar 31 2020 06:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47632 * 2 1 4 4 N 1.46497 * 109.47395 * 120.00661 * 2 1 3 5 5 C 1.46501 * 120.00219 * 119.20817 * 4 2 1 6 6 C 1.50703 * 109.46630 * 270.00043 * 5 4 2 7 7 H 1.07991 * 120.00481 * 0.02562 * 6 5 4 8 8 C 1.37887 * 119.99495 * 180.02562 * 6 5 4 9 9 N 1.31510 * 119.99927 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99569 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47118 * 60.00202 * 10 8 6 12 12 H 1.48509 * 109.46952 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47261 * 299.99626 * 10 8 6 14 14 C 1.34776 * 119.99697 * 299.20561 * 4 2 1 15 15 O 1.21276 * 120.00151 * 5.30936 * 14 4 2 16 16 C 1.50700 * 119.99899 * 185.31413 * 14 4 2 17 17 C 1.53000 * 109.47102 * 177.82476 * 16 14 4 18 18 C 1.50706 * 109.47160 * 179.97438 * 17 16 14 19 19 C 1.33634 * 126.03510 * 89.71243 * 18 17 16 20 20 N 1.31789 * 114.49708 * 179.79179 * 19 18 17 21 21 C 1.29024 * 117.12505 * 0.52150 * 20 19 18 22 22 S 1.70977 * 110.16699 * 359.71433 * 21 20 19 23 23 H 1.09007 * 109.46598 * 306.61179 * 1 2 3 24 24 H 1.08996 * 109.47178 * 66.61062 * 1 2 3 25 25 H 1.08997 * 109.47544 * 186.61696 * 1 2 3 26 26 H 1.09002 * 109.46966 * 240.00643 * 2 1 3 27 27 H 1.08997 * 109.47155 * 173.88990 * 3 2 1 28 28 H 1.09000 * 109.47005 * 293.89553 * 3 2 1 29 29 H 1.09003 * 109.46486 * 53.88637 * 3 2 1 30 30 H 1.09001 * 109.47331 * 29.99663 * 5 4 2 31 31 H 1.08994 * 109.47401 * 150.00052 * 5 4 2 32 32 H 0.97000 * 119.99622 * 180.02562 * 9 8 6 33 33 H 1.09008 * 109.47019 * 297.82321 * 16 14 4 34 34 H 1.09005 * 109.47374 * 57.82007 * 16 14 4 35 35 H 1.08995 * 109.47017 * 299.99594 * 17 16 14 36 36 H 1.09000 * 109.47010 * 59.99809 * 17 16 14 37 37 H 1.08000 * 122.75315 * 359.97438 * 19 18 17 38 38 H 1.08000 * 124.91734 * 179.67968 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.8463 -1.8919 1.0616 6 6 1.9608 -3.1108 1.0268 7 1 0.8887 -3.0017 1.0973 8 6 2.5196 -4.3655 0.9049 9 7 3.8251 -4.4983 0.8185 10 14 1.4222 -5.8765 0.8624 11 1 0.4952 -5.7827 -0.2940 12 1 2.2613 -7.0941 0.7260 13 1 0.6376 -5.9539 2.1208 14 6 1.7060 -0.2211 2.4201 15 8 0.9431 0.7147 2.5341 16 6 2.3050 -0.8587 3.6472 17 6 1.8334 -0.1077 4.8940 18 6 2.4319 -0.7457 6.1212 19 6 3.6002 -0.4237 6.6843 20 7 3.9021 -1.1272 7.7570 21 6 3.0584 -2.0317 8.1240 22 16 1.7184 -2.0533 7.0623 23 1 -0.3633 0.6129 0.8250 24 1 -0.3633 0.4079 -0.9432 25 1 -0.3634 -1.0208 0.1184 26 1 1.8933 -0.5137 -0.8901 27 1 3.1246 1.4443 0.1094 28 1 1.7688 1.9238 -0.9396 29 1 1.5901 1.9869 0.8303 30 1 3.4222 -1.8347 0.1379 31 1 3.5266 -1.9611 1.9103 32 1 4.2182 -5.3809 0.7324 33 1 1.9867 -1.8996 3.7079 34 1 3.3924 -0.8144 3.5858 35 1 2.1517 0.9330 4.8333 36 1 0.7461 -0.1521 4.9554 37 1 4.2429 0.3517 6.2941 38 1 3.1810 -2.6815 8.9779 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000550354548.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:12 Heat of formation + Delta-G solvation = -6.455868 kcal Electronic energy + Delta-G solvation = -20136.488866 eV Core-core repulsion = 17105.461485 eV Total energy + Delta-G solvation = -3031.027381 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.66776 -39.25674 -35.57719 -34.01931 -33.01833 -31.51930 -28.96539 -27.01902 -26.61802 -25.70190 -23.48534 -22.75922 -21.11886 -19.89905 -18.09230 -17.86012 -16.67093 -16.05937 -15.62129 -15.26261 -14.71410 -14.44190 -14.30364 -13.87993 -13.68580 -13.28474 -12.96574 -12.52537 -12.38938 -12.27213 -11.83622 -11.70337 -11.60553 -11.46623 -11.31419 -10.97803 -10.89931 -10.72087 -10.54383 -10.40621 -10.07619 -9.74380 -9.58610 -9.20382 -8.93020 -8.70341 -8.56196 -7.71113 -6.20335 -4.27889 0.79329 1.44473 1.84555 2.91625 3.22173 3.27495 3.28868 3.41348 3.91107 4.31365 4.41328 4.95699 5.12523 5.23381 5.31220 5.39566 5.42453 5.65817 5.70735 5.74471 5.85803 5.99794 6.07340 6.20550 6.21592 6.32348 6.35386 6.44417 6.45504 6.72393 6.80318 6.85969 7.16671 7.58034 7.75076 7.75422 8.03901 8.36218 8.77753 9.02600 9.40306 10.86197 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.011743 B = 0.006299 C = 0.004591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.727246 B = 4444.388465 C = 6097.006867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.148 3.852 3 C -0.164 4.164 4 N -0.592 5.592 5 C 0.237 3.763 6 C -0.538 4.538 7 H 0.060 0.940 8 C 0.065 3.935 9 N -0.891 5.891 10 Si 0.895 3.105 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.521 3.479 15 O -0.572 6.572 16 C -0.132 4.132 17 C -0.026 4.026 18 C -0.197 4.197 19 C 0.022 3.978 20 N -0.471 5.471 21 C 0.004 3.996 22 S 0.124 5.876 23 H 0.073 0.927 24 H 0.048 0.952 25 H 0.056 0.944 26 H 0.082 0.918 27 H 0.049 0.951 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.034 0.966 31 H 0.039 0.961 32 H 0.266 0.734 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.175 0.825 38 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.462 6.093 7.719 10.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.044 3.956 3 C -0.222 4.222 4 N -0.322 5.322 5 C 0.117 3.883 6 C -0.576 4.576 7 H 0.079 0.921 8 C -0.138 4.138 9 N -0.529 5.529 10 Si 0.722 3.278 11 H -0.201 1.201 12 H -0.211 1.211 13 H -0.200 1.200 14 C 0.309 3.691 15 O -0.454 6.454 16 C -0.172 4.172 17 C -0.067 4.067 18 C -0.319 4.319 19 C -0.128 4.128 20 N -0.184 5.184 21 C -0.294 4.294 22 S 0.376 5.624 23 H 0.092 0.908 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.100 0.900 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.121 0.879 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.101 0.899 37 H 0.192 0.808 38 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -3.076 5.871 8.036 10.417 hybrid contribution 0.223 -0.651 -0.440 0.817 sum -2.852 5.220 7.596 9.648 Atomic orbital electron populations 1.22164 0.95661 1.02553 1.01665 1.20822 0.94270 0.92200 0.88315 1.22180 1.00826 0.97024 1.02157 1.48333 1.51161 1.28474 1.04238 1.19463 0.90063 0.80396 0.98420 1.21459 0.93724 0.90775 1.51662 0.92143 1.24939 0.95033 0.99038 0.94755 1.69907 1.09727 1.24097 1.49179 0.86602 0.80428 0.81890 0.78861 1.20127 1.21127 1.20031 1.20290 0.81030 0.82876 0.84879 1.90533 1.37292 1.30618 1.87000 1.21651 1.02178 1.01916 0.91457 1.19829 1.00697 0.98790 0.87349 1.26144 0.99835 1.01983 1.03915 1.21740 0.95849 1.02075 0.93131 1.66295 1.30921 1.06484 1.14698 1.28275 0.94685 1.01660 1.04748 1.84152 1.24417 1.32539 1.21330 0.90834 0.93251 0.92480 0.90018 0.93144 0.92706 0.90993 0.94796 0.94344 0.92460 0.87862 0.89127 0.89283 0.89918 0.80842 0.78794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 9.01 37.16 0.33 -2.50 16 2 C 0.15 2.69 3.28 -67.93 -0.22 2.47 16 3 C -0.16 -2.61 9.01 37.16 0.33 -2.27 16 4 N -0.59 -11.99 2.41 -167.47 -0.40 -12.40 16 5 C 0.24 5.47 4.99 -5.19 -0.03 5.44 16 6 C -0.54 -13.71 9.39 -34.44 -0.32 -14.03 16 7 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 8 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 9 N -0.89 -24.31 13.29 55.43 0.74 -23.57 16 10 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 13 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 14 C 0.52 10.14 7.08 -10.99 -0.08 10.06 16 15 O -0.57 -11.62 12.37 5.56 0.07 -11.55 16 16 C -0.13 -2.26 4.17 -27.88 -0.12 -2.38 16 17 C -0.03 -0.38 5.04 -27.88 -0.14 -0.53 16 18 C -0.20 -2.75 5.85 -35.92 -0.21 -2.96 16 19 C 0.02 0.31 11.25 -19.18 -0.22 0.09 16 20 N -0.47 -6.74 10.54 -15.75 -0.17 -6.91 16 21 C 0.00 0.04 12.23 51.58 0.63 0.68 16 22 S 0.12 1.54 23.22 -107.50 -2.50 -0.95 16 23 H 0.07 1.36 6.27 -51.93 -0.33 1.04 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.08 1.49 7.79 -51.93 -0.40 1.09 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 1.24 6.47 -51.93 -0.34 0.90 16 30 H 0.03 0.83 7.91 -51.93 -0.41 0.42 16 31 H 0.04 0.91 6.38 -51.93 -0.33 0.58 16 32 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 33 H 0.10 1.95 8.10 -51.92 -0.42 1.53 16 34 H 0.09 1.52 7.48 -51.93 -0.39 1.13 16 35 H 0.09 1.24 8.12 -51.93 -0.42 0.82 16 36 H 0.08 1.24 8.08 -51.93 -0.42 0.82 16 37 H 0.17 2.08 8.06 -52.49 -0.42 1.66 16 38 H 0.20 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 330.85 15.07 4.99 4.99 Total: -1.00 -28.49 330.85 -7.96 -36.46 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -5.54 Total: 2.88 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -0.13 Total: -4.31 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: 0.17 Total: -42.88 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.07 Total: -11.55 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -2.50 Total: -0.95 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.49 -7.96 -36.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000550354548.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.999 kcal (2) G-P(sol) polarization free energy of solvation -28.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds