Wall clock time and date at job start Tue Mar 31 2020 05:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29511 * 121.53702 * 2 1 4 4 S 1.69478 * 107.84425 * 180.22270 * 3 2 1 5 5 C 1.72011 * 96.03031 * 359.76163 * 4 3 2 6 6 C 1.50699 * 127.32301 * 180.02562 * 5 4 3 7 7 C 1.37904 * 105.36350 * 359.97438 * 5 4 3 8 8 C 1.47339 * 123.08684 * 179.97438 * 7 5 4 9 9 O 1.21623 * 119.99670 * 90.00658 * 8 7 5 10 10 N 1.34777 * 120.00300 * 269.73280 * 8 7 5 11 11 C 1.46504 * 119.99854 * 180.27805 * 10 8 7 12 12 C 1.50697 * 109.47338 * 89.99608 * 11 10 8 13 13 H 1.08004 * 120.00186 * 359.97438 * 12 11 10 14 14 C 1.37881 * 120.00081 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99813 * 180.02562 * 14 12 11 16 16 Si 1.86791 * 119.99846 * 0.02562 * 14 12 11 17 17 H 1.48495 * 109.47652 * 90.00050 * 16 14 12 18 18 H 1.48499 * 109.47092 * 210.00245 * 16 14 12 19 19 H 1.48504 * 109.47285 * 329.99548 * 16 14 12 20 20 C 1.46496 * 119.99875 * 0.27061 * 10 8 7 21 21 C 1.52997 * 109.46683 * 120.00587 * 20 10 8 22 22 C 1.53001 * 109.47344 * 240.00338 * 20 10 8 23 23 H 1.09003 * 109.47008 * 270.21472 * 1 2 3 24 24 H 1.08997 * 109.46908 * 30.21324 * 1 2 3 25 25 H 1.08997 * 109.47449 * 150.21259 * 1 2 3 26 26 H 1.08997 * 109.46871 * 270.00170 * 6 5 4 27 27 H 1.09004 * 109.46720 * 29.99473 * 6 5 4 28 28 H 1.09000 * 109.47730 * 149.99553 * 6 5 4 29 29 H 1.08994 * 109.46719 * 209.99532 * 11 10 8 30 30 H 1.08996 * 109.47068 * 329.99428 * 11 10 8 31 31 H 0.96994 * 119.99317 * 180.02562 * 15 14 12 32 32 H 1.08995 * 109.47306 * 0.02562 * 20 10 8 33 33 H 1.08995 * 109.47505 * 59.99809 * 21 20 10 34 34 H 1.09002 * 109.46917 * 180.02562 * 21 20 10 35 35 H 1.09001 * 109.47000 * 299.99322 * 21 20 10 36 36 H 1.08994 * 109.47054 * 60.00138 * 22 20 10 37 37 H 1.08992 * 109.47138 * 180.02562 * 22 20 10 38 38 H 1.09005 * 109.46947 * 300.00047 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1844 1.1038 0.0000 4 16 3.8310 0.7026 -0.0063 5 6 3.6017 -1.0021 -0.0019 6 6 4.6675 -2.0674 -0.0038 7 6 2.2351 -1.1869 0.0050 8 6 1.6034 -2.5180 0.0100 9 8 1.3477 -3.0657 1.0654 10 7 1.3040 -3.1263 -1.1548 11 6 0.6704 -4.4472 -1.1496 12 6 -0.8279 -4.2857 -1.1394 13 1 -1.2645 -3.2979 -1.1365 14 6 -1.6413 -5.3990 -1.1336 15 7 -2.9488 -5.2580 -1.1251 16 14 -0.8861 -7.1075 -1.1378 17 1 -0.6768 -7.5597 0.2610 18 1 -1.7994 -8.0507 -1.8316 19 1 0.4184 -7.0703 -1.8465 20 6 1.6120 -2.4666 -2.4260 21 6 2.5729 -3.3406 -3.2344 22 6 0.3202 -2.2600 -3.2195 23 1 -0.3633 0.0039 1.0277 24 1 -0.3633 0.8881 -0.5171 25 1 -0.3634 -0.8918 -0.5105 26 1 4.9205 -2.3263 -1.0319 27 1 5.5557 -1.6936 0.5058 28 1 4.2975 -2.9527 0.5134 29 1 0.9704 -4.9975 -2.0414 30 1 0.9827 -4.9965 -0.2615 31 1 -3.5210 -6.0412 -1.1207 32 1 2.0771 -1.5004 -2.2306 33 1 2.1081 -4.3069 -3.4298 34 1 2.8024 -2.8495 -4.1801 35 1 3.4932 -3.4876 -2.6691 36 1 -0.3643 -1.6374 -2.6436 37 1 0.5495 -1.7695 -4.1655 38 1 -0.1446 -3.2264 -3.4150 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000559375717.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:25 Heat of formation + Delta-G solvation = -23.646968 kcal Electronic energy + Delta-G solvation = -21135.117099 eV Core-core repulsion = 18103.344256 eV Total energy + Delta-G solvation = -3031.772843 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.59119 -39.35323 -37.62841 -34.88042 -34.27620 -32.63700 -31.03481 -30.15541 -28.79473 -27.98597 -25.08525 -23.57952 -22.73397 -21.32407 -19.47146 -19.09312 -18.94965 -17.97432 -17.10923 -16.27242 -15.89293 -15.72287 -15.28762 -14.98396 -14.80852 -14.55036 -14.40678 -14.27569 -13.83075 -13.62253 -13.56113 -13.34797 -13.25597 -13.17856 -12.93665 -12.68578 -12.42612 -12.29819 -12.20271 -11.92136 -11.79098 -11.75866 -11.53028 -10.87562 -10.76568 -10.36525 -9.62853 -9.48395 -8.27146 -6.29537 -0.52686 0.30528 0.66321 1.03641 1.34464 1.38367 1.45386 1.59170 2.28471 2.34608 3.06883 3.31521 3.59880 3.86939 3.92590 4.16211 4.23783 4.26015 4.36417 4.42829 4.48771 4.57859 4.71314 4.74918 4.84605 4.87700 4.93147 4.97279 5.00051 5.04895 5.08564 5.37318 5.47454 5.52042 5.57164 5.65698 6.29769 6.60825 6.71836 7.20417 7.35943 8.89091 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.022981 B = 0.005976 C = 0.005726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.109476 B = 4684.228754 C = 4888.884951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.150 3.850 3 N -0.492 5.492 4 S 0.331 5.669 5 C -0.130 4.130 6 C -0.088 4.088 7 C -0.230 4.230 8 C 0.583 3.417 9 O -0.583 6.583 10 N -0.576 5.576 11 C 0.225 3.775 12 C -0.519 4.519 13 H 0.038 0.962 14 C 0.013 3.987 15 N -0.944 5.944 16 Si 0.936 3.064 17 H -0.280 1.280 18 H -0.279 1.279 19 H -0.236 1.236 20 C 0.131 3.869 21 C -0.157 4.157 22 C -0.151 4.151 23 H 0.082 0.918 24 H 0.100 0.900 25 H 0.062 0.938 26 H 0.112 0.888 27 H 0.112 0.888 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.018 0.982 31 H 0.265 0.735 32 H 0.089 0.911 33 H 0.053 0.947 34 H 0.094 0.906 35 H 0.067 0.933 36 H 0.034 0.966 37 H 0.086 0.914 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.147 8.944 -4.535 20.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.027 4.027 3 N -0.314 5.314 4 S 0.487 5.513 5 C -0.260 4.260 6 C -0.146 4.146 7 C -0.250 4.250 8 C 0.368 3.632 9 O -0.464 6.464 10 N -0.305 5.305 11 C 0.103 3.897 12 C -0.557 4.557 13 H 0.057 0.943 14 C -0.184 4.184 15 N -0.585 5.585 16 Si 0.759 3.241 17 H -0.205 1.205 18 H -0.205 1.205 19 H -0.159 1.159 20 C 0.029 3.971 21 C -0.215 4.215 22 C -0.209 4.209 23 H 0.101 0.899 24 H 0.119 0.881 25 H 0.081 0.919 26 H 0.131 0.869 27 H 0.131 0.869 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.036 0.964 31 H 0.074 0.926 32 H 0.107 0.893 33 H 0.072 0.928 34 H 0.113 0.887 35 H 0.086 0.914 36 H 0.053 0.947 37 H 0.105 0.895 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 18.726 10.637 -4.040 21.912 hybrid contribution -1.739 -2.498 0.457 3.078 sum 16.987 8.138 -3.583 19.174 Atomic orbital electron populations 1.20625 0.86517 1.04064 1.03925 1.21191 0.99025 0.87006 0.95431 1.76201 1.02048 1.25932 1.27230 1.83510 1.08234 0.93494 1.66071 1.26449 0.96610 1.04112 0.98869 1.20601 0.94655 0.93964 1.05379 1.20123 0.93816 0.94827 1.16229 1.17730 0.77686 0.84191 0.83597 1.90751 1.55924 1.67079 1.32630 1.48042 1.57472 1.19377 1.05652 1.19364 0.91653 0.81421 0.97269 1.21481 0.90750 0.93600 1.49911 0.94332 1.25720 0.95012 1.03309 0.94405 1.70039 1.04611 1.31370 1.52452 0.85893 0.79935 0.79447 0.78807 1.20545 1.20453 1.15947 1.21287 0.96417 0.96482 0.82964 1.22155 0.98475 1.00129 1.00707 1.22080 0.96677 1.02284 0.99888 0.89900 0.88095 0.91886 0.86945 0.86949 0.91632 0.92797 0.96399 0.92552 0.89290 0.92817 0.88733 0.91408 0.94656 0.89542 0.92860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.95 9.96 71.24 0.71 -2.24 16 2 C 0.15 4.85 6.68 43.14 0.29 5.14 16 3 N -0.49 -14.33 11.97 -51.10 -0.61 -14.95 16 4 S 0.33 7.14 23.69 -56.49 -1.34 5.80 16 5 C -0.13 -3.21 6.60 25.61 0.17 -3.04 16 6 C -0.09 -1.58 10.19 71.24 0.73 -0.85 16 7 C -0.23 -7.60 3.53 -20.72 -0.07 -7.67 16 8 C 0.58 24.21 5.63 86.64 0.49 24.70 16 9 O -0.58 -29.92 16.69 -4.10 -0.07 -29.99 16 10 N -0.58 -22.91 2.39 -806.11 -1.92 -24.83 16 11 C 0.22 10.52 3.66 85.63 0.31 10.84 16 12 C -0.52 -29.17 8.38 25.60 0.21 -28.96 16 13 H 0.04 2.41 7.87 -2.91 -0.02 2.39 16 14 C 0.01 0.77 5.47 84.66 0.46 1.23 16 15 N -0.94 -58.55 13.96 21.45 0.30 -58.25 16 16 Si 0.94 43.45 27.47 68.60 1.88 45.34 16 17 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 18 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 19 H -0.24 -9.74 6.54 99.48 0.65 -9.09 16 20 C 0.13 4.00 3.16 44.99 0.14 4.14 16 21 C -0.16 -3.69 9.17 71.98 0.66 -3.03 16 22 C -0.15 -4.95 8.47 71.98 0.61 -4.34 16 23 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 24 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 25 H 0.06 2.42 6.86 -2.39 -0.02 2.40 16 26 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.11 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.06 1.51 7.85 -2.39 -0.02 1.49 16 29 H 0.05 2.32 5.48 -2.39 -0.01 2.30 16 30 H 0.02 0.91 6.85 -2.39 -0.02 0.89 16 31 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 32 H 0.09 2.47 6.10 -2.39 -0.01 2.45 16 33 H 0.05 1.43 6.66 -2.39 -0.02 1.41 16 34 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.03 1.29 7.61 -2.39 -0.02 1.27 16 37 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.05 2.05 6.92 -2.38 -0.02 2.03 16 Total: -1.00 -73.67 325.33 3.96 -69.71 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 1.01 Total: 11.25 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: 4.71 Total: -4.08 kcal Atomic # 7 Polarization: -95.79 SS G_CDS: -2.24 Total: -98.03 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -0.07 Total: -29.99 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 1.88 Total: 45.34 kcal Atomic # 16 Polarization: 7.14 SS G_CDS: -1.34 Total: 5.80 kcal Total: -73.67 3.96 -69.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000559375717.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.063 kcal (2) G-P(sol) polarization free energy of solvation -73.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds