Wall clock time and date at job start Tue Mar 31 2020 05:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50697 * 109.47260 * 2 1 4 4 N 1.32444 * 120.35860 * 90.00081 * 3 2 1 5 5 C 1.32530 * 120.88277 * 179.97438 * 4 3 2 6 6 S 1.76196 * 119.19579 * 179.97438 * 5 4 3 7 7 C 1.81005 * 100.00018 * 180.02562 * 6 5 4 8 8 H 1.09005 * 109.46553 * 55.00449 * 7 6 5 9 9 C 1.52996 * 109.47256 * 295.00590 * 7 6 5 10 10 C 1.53001 * 109.46805 * 175.00146 * 7 6 5 11 11 C 1.50700 * 109.47320 * 295.00116 * 10 7 6 12 12 H 1.08006 * 119.99825 * 0.02562 * 11 10 7 13 13 C 1.37875 * 120.00013 * 180.02562 * 11 10 7 14 14 N 1.31517 * 119.99760 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99802 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47130 * 89.99981 * 15 13 11 17 17 H 1.48501 * 109.46684 * 209.99686 * 15 13 11 18 18 H 1.48492 * 109.47150 * 329.99228 * 15 13 11 19 19 N 1.32549 * 121.60941 * 0.02562 * 5 4 3 20 20 C 1.32711 * 120.63947 * 359.97438 * 19 5 4 21 21 O 1.35513 * 120.46762 * 180.02562 * 20 19 5 22 22 C 1.38213 * 120.36382 * 269.97722 * 3 2 1 23 23 C 1.50698 * 120.74253 * 0.02562 * 22 3 2 24 24 H 1.08998 * 109.47712 * 299.99626 * 1 2 3 25 25 H 1.09001 * 109.47583 * 60.00073 * 1 2 3 26 26 H 1.09000 * 109.47365 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47319 * 239.99844 * 2 1 3 28 28 H 1.09003 * 109.47292 * 120.00645 * 2 1 3 29 29 H 1.08998 * 109.47661 * 59.99740 * 9 7 6 30 30 H 1.08996 * 109.46862 * 180.02562 * 9 7 6 31 31 H 1.09009 * 109.46910 * 299.99823 * 9 7 6 32 32 H 1.08996 * 109.47004 * 55.00618 * 10 7 6 33 33 H 1.09005 * 109.46490 * 175.00352 * 10 7 6 34 34 H 0.97005 * 119.99440 * 180.02562 * 14 13 11 35 35 H 0.96698 * 114.00218 * 269.98235 * 21 20 19 36 36 H 1.08994 * 109.47521 * 89.99560 * 23 22 3 37 37 H 1.08997 * 109.47370 * 210.00206 * 23 22 3 38 38 H 1.09004 * 109.46809 * 329.99904 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2554 2.0519 1.1428 5 6 2.6977 3.3011 1.1550 6 16 2.9788 4.0984 2.7009 7 6 3.5507 5.7150 2.1214 8 1 2.8090 6.1421 1.4463 9 6 4.8795 5.5506 1.3811 10 6 3.7461 6.6463 3.3195 11 6 2.4148 6.9062 3.9762 12 1 1.5190 6.4521 3.5789 13 6 2.3405 7.7235 5.0840 14 7 3.4315 8.2760 5.5680 15 14 0.6904 8.0451 5.8984 16 1 0.4473 7.0208 6.9457 17 1 0.6989 9.3945 6.5182 18 1 -0.3868 7.9757 4.8786 19 7 2.9327 3.9658 0.0325 20 6 2.7303 3.3934 -1.1476 21 8 2.9722 4.0760 -2.2929 22 6 2.2656 2.0793 -1.1925 23 6 2.0228 1.3928 -2.5119 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 4.7403 4.8871 0.5275 30 1 5.2240 6.5242 1.0325 31 1 5.6211 5.1235 2.0562 32 1 4.4201 6.1785 4.0371 33 1 4.1743 7.5896 2.9803 34 1 3.3792 8.8508 6.3477 35 1 2.2097 4.5688 -2.6257 36 1 0.9956 1.5702 -2.8302 37 1 2.7088 1.7903 -3.2600 38 1 2.1886 0.3213 -2.3999 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566498658.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:57 Heat of formation + Delta-G solvation = -15.870191 kcal Electronic energy + Delta-G solvation = -19781.726929 eV Core-core repulsion = 16750.291313 eV Total energy + Delta-G solvation = -3031.435616 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.08914 -37.70342 -35.50742 -34.52118 -32.60121 -32.09430 -31.40893 -27.86480 -27.23213 -24.99380 -23.30746 -23.11893 -21.98386 -20.60768 -18.73974 -18.06507 -16.85359 -16.35460 -15.77798 -14.96725 -14.64027 -14.50001 -14.41125 -14.17001 -13.98222 -13.31404 -12.98593 -12.71378 -12.56299 -12.43458 -12.17976 -11.85973 -11.68255 -11.59911 -11.29022 -11.17220 -10.83129 -10.68746 -10.55411 -10.25254 -10.17601 -9.57285 -9.49358 -9.39442 -9.13618 -9.06239 -8.39193 -7.13906 -6.04308 -4.06742 0.82529 1.06630 1.82126 2.84672 3.32849 3.38801 3.42493 3.43194 3.73827 4.14540 4.44709 4.62151 4.75742 4.81220 5.01437 5.07486 5.17182 5.33091 5.33320 5.48988 5.59893 5.68739 5.73378 5.79090 5.90960 5.93100 5.97712 6.17933 6.25442 6.59251 6.65422 6.81457 7.00699 7.31961 7.51237 7.57335 7.92580 8.05752 8.29283 8.98025 9.57718 11.06736 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.022283 B = 0.004470 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.259144 B = 6262.356608 C = 6894.383842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.076 4.076 3 C 0.200 3.800 4 N -0.510 5.510 5 C 0.313 3.687 6 S 0.042 5.958 7 C -0.064 4.064 8 H 0.090 0.910 9 C -0.145 4.145 10 C 0.036 3.964 11 C -0.523 4.523 12 H 0.062 0.938 13 C 0.061 3.939 14 N -0.893 5.893 15 Si 0.892 3.108 16 H -0.279 1.279 17 H -0.287 1.287 18 H -0.273 1.273 19 N -0.538 5.538 20 C 0.370 3.630 21 O -0.475 6.475 22 C -0.235 4.235 23 C -0.096 4.096 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.027 0.973 33 H 0.039 0.961 34 H 0.262 0.738 35 H 0.404 0.596 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.643 -14.573 -15.685 21.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 C 0.050 3.950 4 N -0.229 5.229 5 C -0.060 4.060 6 S 0.282 5.718 7 C -0.194 4.194 8 H 0.108 0.892 9 C -0.204 4.204 10 C -0.003 4.003 11 C -0.562 4.562 12 H 0.080 0.920 13 C -0.141 4.141 14 N -0.532 5.532 15 Si 0.720 3.280 16 H -0.205 1.205 17 H -0.212 1.212 18 H -0.198 1.198 19 N -0.267 5.267 20 C 0.179 3.821 21 O -0.283 6.283 22 C -0.246 4.246 23 C -0.154 4.154 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.104 0.896 28 H 0.106 0.894 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.045 0.955 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.263 0.737 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.974 -14.530 -13.432 20.009 hybrid contribution -1.209 0.731 -1.693 2.205 sum -4.183 -13.799 -15.124 20.896 Atomic orbital electron populations 1.21674 0.93577 1.02279 1.02615 1.20567 0.96907 0.89916 1.04038 1.21485 0.90044 0.96302 0.87124 1.68439 1.16424 1.08642 1.29391 1.25667 0.92524 0.89920 0.97851 1.86447 1.77944 1.10933 0.96492 1.23673 0.99546 0.93317 1.02818 0.89214 1.22114 0.95937 1.02089 1.00250 1.19104 0.98164 0.93059 0.89925 1.21254 0.93557 1.28959 1.12392 0.91951 1.24980 0.96518 0.95629 0.96942 1.69959 1.27453 1.32039 1.23781 0.86579 0.84203 0.77500 0.79726 1.20464 1.21250 1.19803 1.68491 1.20847 1.39329 0.98016 1.19314 0.89258 0.88096 0.85444 1.84659 1.41215 1.67058 1.35337 1.21300 1.08208 0.96880 0.98189 1.20540 1.02024 1.00083 0.92748 0.91904 0.92597 0.91641 0.89553 0.89363 0.91752 0.92226 0.92895 0.95507 0.94298 0.92869 0.73706 0.91335 0.90923 0.91048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.89 37.15 0.37 -0.85 16 2 C -0.08 -0.73 5.88 -27.89 -0.16 -0.90 16 3 C 0.20 2.73 6.07 -82.34 -0.50 2.23 16 4 N -0.51 -8.83 10.33 -9.74 -0.10 -8.93 16 5 C 0.31 5.91 7.65 -90.87 -0.70 5.21 16 6 S 0.04 0.88 21.00 -107.50 -2.26 -1.38 16 7 C -0.06 -1.38 2.14 -26.73 -0.06 -1.43 16 8 H 0.09 1.98 7.95 -51.91 -0.41 1.56 16 9 C -0.14 -2.75 8.96 37.16 0.33 -2.41 16 10 C 0.04 0.92 4.44 -27.88 -0.12 0.80 16 11 C -0.52 -14.50 8.53 -34.44 -0.29 -14.79 16 12 H 0.06 1.71 7.60 -52.48 -0.40 1.31 16 13 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 14 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 15 Si 0.89 21.68 29.54 -169.99 -5.02 16.65 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 19 N -0.54 -9.60 6.87 -13.50 -0.09 -9.69 16 20 C 0.37 5.43 7.80 -16.72 -0.13 5.30 16 21 O -0.48 -5.65 12.74 -18.23 -0.23 -5.88 16 22 C -0.23 -2.95 5.93 -104.18 -0.62 -3.57 16 23 C -0.10 -0.80 9.46 36.00 0.34 -0.46 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.09 0.62 6.06 -51.93 -0.31 0.31 16 28 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.06 1.20 5.64 -51.93 -0.29 0.91 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.05 0.98 8.14 -51.92 -0.42 0.55 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.40 2.83 9.06 45.56 0.41 3.24 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.59 7.62 -51.93 -0.40 0.20 16 38 H 0.07 0.49 6.06 -51.93 -0.31 0.17 16 LS Contribution 328.89 15.07 4.96 4.96 Total: -1.00 -32.26 328.89 -8.31 -40.57 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -4.66 Total: -1.37 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -1.64 Total: -9.24 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: 0.54 Total: -44.32 kcal Atomic # 8 Polarization: -5.65 SS G_CDS: -0.23 Total: -5.88 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.26 Total: -1.38 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.26 -8.31 -40.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566498658.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.699 kcal (2) G-P(sol) polarization free energy of solvation -32.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds