Wall clock time and date at job start Tue Mar 31 2020 05:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50691 * 109.47681 * 2 1 4 4 C 1.38258 * 120.36686 * 124.99622 * 3 2 1 5 5 C 1.39414 * 118.52058 * 180.02562 * 4 3 2 6 6 O 1.35519 * 120.45961 * 180.02562 * 5 4 3 7 7 N 1.32742 * 119.07484 * 0.02562 * 5 4 3 8 8 C 1.32519 * 120.63696 * 359.97438 * 7 5 4 9 9 S 1.76199 * 119.19080 * 179.97438 * 8 7 5 10 10 C 1.81002 * 100.00182 * 0.02562 * 9 8 7 11 11 C 1.52998 * 109.47085 * 180.02562 * 10 9 8 12 12 C 1.52996 * 109.46939 * 299.99375 * 11 10 9 13 13 C 1.52997 * 109.47516 * 59.99760 * 11 10 9 14 14 C 1.50704 * 109.46615 * 180.02562 * 11 10 9 15 15 H 1.07991 * 120.00439 * 359.97438 * 14 11 10 16 16 C 1.37885 * 119.99466 * 179.97438 * 14 11 10 17 17 N 1.31511 * 120.00156 * 359.97438 * 16 14 11 18 18 Si 1.86801 * 119.99470 * 179.97438 * 16 14 11 19 19 H 1.48493 * 109.47403 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46873 * 119.99891 * 18 16 14 21 21 H 1.48500 * 109.47022 * 239.99511 * 18 16 14 22 22 N 1.32422 * 120.36271 * 305.27535 * 3 2 1 23 23 H 1.09002 * 109.47485 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46938 * 300.00597 * 1 2 3 25 25 H 1.09001 * 109.46757 * 59.99989 * 1 2 3 26 26 H 1.09008 * 109.47215 * 239.99431 * 2 1 3 27 27 H 1.09000 * 109.47205 * 120.00299 * 2 1 3 28 28 H 1.07997 * 120.73828 * 0.04847 * 4 3 2 29 29 H 0.96699 * 113.99860 * 269.97881 * 6 5 4 30 30 H 1.09005 * 109.46889 * 299.99975 * 10 9 8 31 31 H 1.09000 * 109.47231 * 59.99947 * 10 9 8 32 32 H 1.09008 * 109.47024 * 60.00353 * 12 11 10 33 33 H 1.09002 * 109.47321 * 180.02562 * 12 11 10 34 34 H 1.09000 * 109.47358 * 300.00370 * 12 11 10 35 35 H 1.08997 * 109.46826 * 59.99941 * 13 11 10 36 36 H 1.09004 * 109.46962 * 179.97438 * 13 11 10 37 37 H 1.08998 * 109.46903 * 300.00047 * 13 11 10 38 38 H 0.97000 * 119.99592 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.9105 1.8515 0.9772 5 6 3.3504 3.1739 0.9407 6 8 4.2116 3.6376 1.8787 7 7 2.9139 3.9725 -0.0256 8 6 2.0721 3.5226 -0.9449 9 16 1.5166 4.6158 -2.2101 10 6 2.4010 6.1218 -1.7349 11 6 2.0636 7.2435 -2.7192 12 6 2.4855 6.8280 -4.1300 13 6 0.5568 7.5077 -2.6945 14 6 2.8006 8.4972 -2.3239 15 1 3.4447 8.4943 -1.4571 16 6 2.6523 9.6479 -3.0689 17 7 1.8682 9.6512 -4.1247 18 14 3.5653 11.2021 -2.5784 19 1 4.3764 10.9371 -1.3632 20 1 4.4590 11.6221 -3.6877 21 1 2.5866 12.2825 -2.2952 22 7 1.6335 2.2717 -0.9328 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5140 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.2483 1.1785 1.7513 29 1 3.7795 4.0133 2.6580 30 1 2.1002 6.4181 -0.7300 31 1 3.4745 5.9335 -1.7522 32 1 1.9528 5.9210 -4.4162 33 1 2.2455 7.6273 -4.8312 34 1 3.5589 6.6398 -4.1476 35 1 0.2564 7.8037 -1.6894 36 1 0.3166 8.3071 -3.3954 37 1 0.0242 6.6008 -2.9806 38 1 1.7637 10.4609 -4.6486 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567368535.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:53 Heat of formation + Delta-G solvation = -12.135395 kcal Electronic energy + Delta-G solvation = -19689.860195 eV Core-core repulsion = 16658.586532 eV Total energy + Delta-G solvation = -3031.273663 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.97489 -37.72621 -36.00405 -34.98747 -31.97004 -31.50973 -30.77038 -26.44630 -25.68350 -25.16178 -24.92972 -24.40070 -22.00627 -19.38767 -18.56841 -17.72231 -16.92425 -15.97616 -15.81519 -15.42145 -14.73468 -14.47903 -14.46694 -14.06435 -13.78027 -13.20281 -12.71790 -12.60097 -12.28547 -12.13024 -11.74783 -11.44714 -11.36224 -11.27574 -10.88092 -10.87487 -10.55490 -10.35059 -10.28286 -10.11486 -9.91625 -9.84723 -9.54564 -9.45505 -9.21500 -8.65853 -8.38739 -7.25924 -6.00320 -4.10933 0.78874 1.01403 1.69554 2.80174 3.27775 3.36254 3.39235 3.41345 3.70690 4.08894 4.40981 4.59638 4.92669 4.94473 5.06411 5.08259 5.26051 5.31922 5.52509 5.64796 5.82621 6.04388 6.05769 6.15861 6.17238 6.56594 6.82913 6.91914 6.95534 7.04471 7.05785 7.28947 7.36094 7.58852 7.71998 7.98917 8.02921 8.15328 8.39225 8.88604 9.54342 11.00934 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.026868 B = 0.004218 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.894283 B = 6636.262232 C = 7420.789522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.072 4.072 3 C 0.201 3.799 4 C -0.269 4.269 5 C 0.375 3.625 6 O -0.477 6.477 7 N -0.545 5.545 8 C 0.322 3.678 9 S 0.009 5.991 10 C -0.076 4.076 11 C 0.078 3.922 12 C -0.136 4.136 13 C -0.135 4.135 14 C -0.502 4.502 15 H 0.058 0.942 16 C 0.067 3.933 17 N -0.884 5.884 18 Si 0.894 3.106 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 N -0.512 5.512 23 H 0.061 0.939 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.147 0.853 29 H 0.406 0.594 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.017 0.983 33 H 0.087 0.913 34 H 0.028 0.972 35 H 0.028 0.972 36 H 0.087 0.913 37 H 0.017 0.983 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.373 -16.120 9.436 18.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 C 0.052 3.948 4 C -0.297 4.297 5 C 0.184 3.816 6 O -0.285 6.285 7 N -0.274 5.274 8 C -0.052 4.052 9 S 0.249 5.751 10 C -0.224 4.224 11 C 0.075 3.925 12 C -0.194 4.194 13 C -0.193 4.193 14 C -0.542 4.542 15 H 0.076 0.924 16 C -0.135 4.135 17 N -0.523 5.523 18 Si 0.722 3.278 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 N -0.231 5.231 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.089 0.911 26 H 0.108 0.892 27 H 0.101 0.899 28 H 0.164 0.836 29 H 0.265 0.735 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.036 0.964 33 H 0.106 0.894 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.106 0.894 37 H 0.036 0.964 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.064 -15.677 7.265 17.402 hybrid contribution 1.589 0.729 2.514 3.062 sum -0.474 -14.948 9.778 17.869 Atomic orbital electron populations 1.21675 0.93529 1.01920 1.03103 1.20538 0.97473 0.89375 1.03596 1.21640 0.89357 0.96097 0.87744 1.22550 1.04307 0.97962 1.04889 1.19467 0.85443 0.88488 0.88179 1.84703 1.32009 1.81190 1.30571 1.68476 1.13951 1.39450 1.05568 1.25594 0.90531 0.93106 0.95921 1.86126 1.57087 1.04596 1.27306 1.24163 1.01578 0.92401 1.04290 1.18094 0.93949 0.90159 0.90264 1.21917 0.98177 0.99179 1.00090 1.21911 0.96384 1.00106 1.00911 1.21037 1.27072 0.93980 1.12147 0.92391 1.24885 0.95165 0.98591 0.94847 1.69821 1.37552 1.27927 1.16963 0.86511 0.79652 0.83149 0.78535 1.19811 1.21022 1.21028 1.68401 1.27199 1.02349 1.25199 0.92048 0.92861 0.91099 0.89244 0.89930 0.83564 0.73468 0.90122 0.90055 0.96444 0.89394 0.95290 0.95320 0.89414 0.96431 0.92991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.78 37.16 0.36 -0.90 16 2 C -0.07 -0.64 6.36 -27.89 -0.18 -0.82 16 3 C 0.20 2.62 6.20 -82.33 -0.51 2.11 16 4 C -0.27 -3.28 9.75 -39.14 -0.38 -3.67 16 5 C 0.38 5.55 7.83 -16.72 -0.13 5.42 16 6 O -0.48 -5.91 13.57 -18.25 -0.25 -6.15 16 7 N -0.55 -9.87 9.16 -13.50 -0.12 -9.99 16 8 C 0.32 5.90 7.85 -90.87 -0.71 5.19 16 9 S 0.01 0.18 19.30 -107.50 -2.07 -1.90 16 10 C -0.08 -1.63 3.75 37.16 0.14 -1.49 16 11 C 0.08 1.87 0.52 -155.66 -0.08 1.78 16 12 C -0.14 -3.23 8.01 37.16 0.30 -2.94 16 13 C -0.14 -3.19 8.01 37.16 0.30 -2.90 16 14 C -0.50 -13.32 8.01 -34.44 -0.28 -13.60 16 15 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 16 C 0.07 1.77 5.15 -17.82 -0.09 1.68 16 17 N -0.88 -23.91 9.35 55.43 0.52 -23.39 16 18 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 N -0.51 -8.41 9.98 -9.74 -0.10 -8.51 16 23 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.75 7.97 -51.93 -0.41 0.34 16 26 H 0.09 0.76 8.14 -51.92 -0.42 0.33 16 27 H 0.08 0.53 7.93 -51.93 -0.41 0.11 16 28 H 0.15 1.28 8.00 -52.49 -0.42 0.86 16 29 H 0.41 2.86 9.06 45.56 0.41 3.27 16 30 H 0.08 1.76 8.11 -51.91 -0.42 1.34 16 31 H 0.08 1.81 8.11 -51.92 -0.42 1.39 16 32 H 0.02 0.37 6.91 -51.92 -0.36 0.01 16 33 H 0.09 2.28 6.07 -51.93 -0.31 1.97 16 34 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.09 2.26 6.07 -51.93 -0.32 1.95 16 37 H 0.02 0.37 6.91 -51.93 -0.36 0.01 16 38 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 325.35 15.07 4.90 4.90 Total: -1.00 -30.00 325.35 -8.08 -38.09 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -4.68 Total: 1.27 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -1.26 Total: -10.13 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: 0.30 Total: -41.89 kcal Atomic # 8 Polarization: -5.91 SS G_CDS: -0.25 Total: -6.15 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 0.18 SS G_CDS: -2.07 Total: -1.90 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.00 -8.08 -38.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567368535.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.953 kcal (2) G-P(sol) polarization free energy of solvation -30.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds